Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

3467505 .. 3468698

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1047700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGTTGACGATGGTGAAGAACGAAGAGAACCCTGGGAGGCGCCGCCTGTGTGCAGAAGACCCTGAGGCTCAGGCAGCCCGGTGTGTCAAGAGAAGGAGAAGAGACCCGCCTCCAGTTGCGGTTAGTTGTGACAACAGCCAGACTGAGCAGAAGTTGCCGCAAAAGCTAGCTGATCAAACTCTTACTACCACCATGAAGAGAAGCTCGAGATTTCGGGGTGTCAGCAGGCATCGGTGGACTGGTCGATTCGAAGCTCACTTGTGGGATAAGCTCTCATGGAATGTAACACAGAAGAAGAAAGGGAAACAAGTTTACCTTGGAGCTTATGGCGAAGAAGAATCTGCTGCAAGAGCATATGATTTAGCAGCGCTCAAGTACTGGGGAGCATCGACTTTCACCAACTTCCCGATATCGGACTATGAGAAAGAAATCGAGATCATGCAATCTGTGACGAAAGAAGAGTTTTTGGCCTCGTTAAGAAGGTACAACCTCGAACGTCTTTCTGCAGAAAGACTTCTGCAGTTGAGAATTTCCTTGATCTCTGAGTTCCCTAAAATATTAGGTGTTTCCTTTTGTTACAGAAAAAGCAGTGGATTTTCAAGAGGTGTATCTAAGTACAGAGGAGTAGCAAGGCACCATCATAACGGCAGATGGGAAGCAAGAATCGGAAGAGCTTTCGGAAACAAGTACCTCTACCTTGGCACTTACAGTAAGTTGTCTTCAAACCCGAAAACCAGTTACAGTGAAATAAGCTGTCGCGAAAGAGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

259

Amino Acids

29.85

Weight (kDa)

9.93

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	70 - 129	8.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	42, 636
AccII	CGCG	1 cut(s)	762
AciI	CCGC	4 cut(s)	46, 110, 122, 161
AcsI	RAATTY	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	4 cut(s)	380, 488, 620, 692
AfeI	AGCGCT	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	603, 726
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	8 cut(s)	169, 173, 207, 257, 274, 326, 677, 756
AluI	AGCT	8 cut(s)	169, 173, 207, 257, 274, 326, 677, 756
Alw26I	GTCTC	1 cut(s)	99
Ama87I	CYCGRG	1 cut(s)	208
Aor51HI	AGCGCT	1 cut(s)	372
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	3 cut(s)	77, 347, 368
ApoI	RAATTY	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	45, 373
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	28, 391
AsuII	TTCGAA	1 cut(s)	252
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	66
BanI	GGYRCC	2 cut(s)	42, 636
BarI	GAAGNNNNNNTAC	2 cut(s)	706, 738
BbsI	GAAGAC	2 cut(s)	66, 714
BbvI	GCAGC	3 cut(s)	89, 334, 380
BccI	CCATC	3 cut(s)	7, 648, 648
BceAI	ACGGC	1 cut(s)	664
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	507, 521
BfoI	RGCGCY	2 cut(s)	46, 374
BisI	GCNGC	5 cut(s)	46, 78, 161, 348, 369
BlsI	GCNGC	5 cut(s)	47, 79, 162, 349, 370
BmcAI	AGTACT	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	36, 82
BmeT110I	CYCGRG	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	44, 638
BmrFI	CCNGG	2 cut(s)	36, 82
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	241, 398
BmtI	GCTAGC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	66, 714
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	4 cut(s)	34, 35, 319, 700
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	4 cut(s)	116, 247, 386, 738
Bse21I	CCTNAGG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	4 cut(s)	34, 35, 319, 700
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	4 cut(s)	57, 86, 138, 537
BseNI	ACTGG	4 cut(s)	116, 247, 386, 738
BseRI	GAGGAG	1 cut(s)	639
BseXI	GCAGC	3 cut(s)	89, 334, 380
BsgI	GTGCAG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	762
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	2 cut(s)	42, 636
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	473
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	175, 438, 540
Bsp68I	TCGCGA	1 cut(s)	762
BspACI	CCGC	4 cut(s)	46, 110, 122, 161
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	4 cut(s)	58, 85, 139, 538
BspFNI	CGCG	1 cut(s)	762
BspLI	GGNNCC	2 cut(s)	44, 638
BspMAI	CTGCAG	2 cut(s)	511, 525
BspOI	GCTAGC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	667
BspT104I	TTCGAA	1 cut(s)	252
BspT107I	GGYRCC	2 cut(s)	42, 636
BspTNI	GGTCTC	1 cut(s)	99
BsrI	ACTGG	4 cut(s)	116, 247, 386, 738
BssECI	CCNNGG	4 cut(s)	34, 35, 319, 700
BssMI	GATC	3 cut(s)	175, 438, 540
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	319, 700
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	713, 746
Bst6I	CTCTTC	5 cut(s)	21, 97, 194, 456, 667
BstACI	GRCGYC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	171, 230
BstDEI	CTNAG	5 cut(s)	66, 72, 147, 546, 615
BstFNI	CGCG	1 cut(s)	762
BstH2I	RGCGCY	2 cut(s)	46, 374
BstHHI	GCGC	2 cut(s)	45, 373
BstKTI	GATC	3 cut(s)	178, 441, 543
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	3 cut(s)	175, 438, 540
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 157, 166, 353
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	34, 80
BstSFI	CTRYAG	2 cut(s)	507, 521
BstUI	CGCG	1 cut(s)	762
BstV1I	GCAGC	3 cut(s)	89, 334, 380
BstV2I	GAAGAC	2 cut(s)	66, 714
Bsu36I	CCTNAGG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	473
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	598, 751
BtuMI	TCGCGA	1 cut(s)	762
Cac8I	GCNNGC	2 cut(s)	171, 230
CfoI	GCGC	2 cut(s)	45, 373
Csp6I	GTAC	4 cut(s)	379, 487, 619, 691
CviAII	CATG	3 cut(s)	196, 279, 442
CviQI	GTAC	4 cut(s)	379, 487, 619, 691
DdeI	CTNAG	5 cut(s)	66, 72, 147, 546, 615
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	3 cut(s)	177, 440, 542
DpnII	GATC	3 cut(s)	175, 438, 540
Eam1104I	CTCTTC	5 cut(s)	21, 97, 194, 456, 667
EarI	CTCTTC	5 cut(s)	21, 97, 194, 456, 667
Eco130I	CCWWGG	2 cut(s)	319, 700
Eco31I	GGTCTC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	414
Eco47III	AGCGCT	1 cut(s)	372
Eco81I	CCTNAGG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	319, 700
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	319, 700
FaeI	CATG	3 cut(s)	199, 282, 445
FaiI	YATR	8 cut(s)	197, 280, 330, 358, 360, 423, 443, 645
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	3 cut(s)	195, 278, 441
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	46, 78, 161, 348, 369
Fsp4HI	GCNGC	5 cut(s)	46, 78, 161, 348, 369
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	2 cut(s)	44, 372
GluI	GCNGC	5 cut(s)	46, 78, 161, 348, 369
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	2 cut(s)	46, 374
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	2 cut(s)	45, 373
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	199, 282, 445
Hin6I	GCGC	2 cut(s)	43, 371
HinP1I	GCGC	2 cut(s)	43, 371
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	249, 341, 666
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	28, 391
Hpy166II	GTNNAC	3 cut(s)	9, 240, 316
Hpy188I	TCNGA	4 cut(s)	418, 547, 671, 683
Hpy188III	TCNNGA	6 cut(s)	91, 210, 409, 436, 603, 761
Hpy8I	GTNNAC	3 cut(s)	9, 240, 316
HpyAV	CCTTC	2 cut(s)	90, 477
HpyCH4III	ACNGT	2 cut(s)	713, 746
HpyCH4IV	ACGT	1 cut(s)	499
HpyCH4V	TGCA	5 cut(s)	56, 350, 445, 509, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 157, 166, 353
HpyF3I	CTNAG	5 cut(s)	66, 72, 147, 546, 615
HpySE526I	ACGT	1 cut(s)	499
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	199, 282, 445
HspAI	GCGC	2 cut(s)	43, 371
KasI	GGCGCC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	175, 438, 540
LguI	GCTCTTC	1 cut(s)	667
LmnI	GCTCC	2 cut(s)	323, 386
Lsp1109I	GCAGC	3 cut(s)	89, 334, 380
LweI	GCATC	2 cut(s)	241, 398
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	5 cut(s)	131, 286, 451, 578, 740
MalI	GATC	3 cut(s)	177, 440, 542
MboI	GATC	3 cut(s)	175, 438, 540
MluCI	AATT	2 cut(s)	531, 772
Mly113I	GGCGCC	1 cut(s)	43
MnlI	CCTC	9 cut(s)	33, 61, 123, 484, 503, 599, 617, 704, 761
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	1 cut(s)	479
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	36, 82
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	762
MwoI	GCNNNNNNNGC	4 cut(s)	77, 157, 166, 353
NarI	GGCGCC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	3 cut(s)	175, 438, 540
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	199, 282, 445
NlaIV	GGNNCC	2 cut(s)	44, 638
NmuCI	GTSAC	2 cut(s)	131, 451
NruI	TCGCGA	1 cut(s)	762
NspV	TTCGAA	1 cut(s)	252
PaeR7I	CTCGAG	1 cut(s)	208
PasI	CCCWGGG	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	249, 341, 666
PkrI	GCNGC	5 cut(s)	47, 79, 162, 349, 370
PluTI	GGCGCC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	44, 638
PstI	CTGCAG	2 cut(s)	511, 525
RruI	TCGCGA	1 cut(s)	762
RsaI	GTAC	4 cut(s)	380, 488, 620, 692
RsaNI	GTAC	4 cut(s)	379, 487, 619, 691
SapI	GCTCTTC	1 cut(s)	667
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	5 cut(s)	46, 78, 161, 348, 369
Sau3AI	GATC	3 cut(s)	175, 438, 540
ScaI	AGTACT	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	36, 82
SfaNI	GCATC	2 cut(s)	241, 398
SfcI	CTRYAG	2 cut(s)	507, 521
SfoI	GGCGCC	1 cut(s)	44
Sfr274I	CTCGAG	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	208, 374
SmoI	CTYRAG	2 cut(s)	208, 374
Sse9I	AATT	2 cut(s)	531, 772
SsiI	CCGC	4 cut(s)	46, 110, 122, 161
SspDI	GGCGCC	1 cut(s)	42
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	34, 80
StyI	CCWWGG	2 cut(s)	319, 700
TaaI	ACNGT	2 cut(s)	713, 746
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	6 cut(s)	209, 247, 252, 392, 435, 495
TasI	AATT	2 cut(s)	531, 772
TatI	WGTACW	2 cut(s)	378, 618
TauI	GCSGC	2 cut(s)	48, 163
TfiI	GAWTC	3 cut(s)	249, 341, 666
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	2 cut(s)	598, 751
TseFI	GTSAC	2 cut(s)	131, 451
TseI	GCWGC	3 cut(s)	77, 347, 368
Tsp45I	GTSAC	2 cut(s)	131, 451
TspDTI	ATGAA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	598, 751
XapI	RAATTY	1 cut(s)	531
XhoI	CTCGAG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.