Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

16275273 .. 16275894

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0187200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCGGACCCAAAACCCAGACTAGTCTGCTGCATCGGCGACGTCCACGGCTTCCACACCAAGCTCCAAAACCTCTGGTCCAATCTCGAATCCTCCATCCCCTCTTCAGATTTCGCCACCGCCCTCGTCATCTTCCTCGGCGACTACTGCGACCGCGGCCCAGACACCAACAAAGTCCTCGACTTCCTCATTTCCCTCCCCTCCAGATACCCGCATCAGAAACATGTCTTCATCGCCGGAAACCACGACTTCTCCTTCGCCGGCTTCTTGAGAGTCCTGCCTCCGCCGCCGGACGGGTCCGAGTTCCGGGAGGGGTGGAAGGAGTTCGAGGACAATGAGGAGAGAGAAGGGTGGTTCAAGGGCGAGGGGTACGAGGGAATGCACTTGCAAGGGAGGAGATGGGCTGGGAGTAAGAATTCTGATGCTGGGCCCACTTTTGAGTCCTATGGGGTGCCTCATGGCTCTGCCGGTATGATTTGGGAGGGATTTTGTTTCAATTGTTGGTTCAATCTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

172

Amino Acids

19.49

Weight (kDa)

5.43

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	9 - 111	2.9e-13	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	451
AccII	CGCG	1 cut(s)	156
AciI	CCGC	6 cut(s)	120, 154, 156, 212, 284, 287
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	293, 306
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	358, 496, 508
AhlI	ACTAGT	1 cut(s)	22
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AoxI	GGCC	2 cut(s)	157, 428
ApaI	GGGCCC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	415
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	6 cut(s)	7, 78, 158, 297, 428, 429
AsuC2I	CCSGG	1 cut(s)	308
AvaII	GGWCC	3 cut(s)	7, 78, 297
BaeGI	GKGCMC	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	104, 393
BceAI	ACGGC	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	308
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	3 cut(s)	31, 157, 287
BlsI	GCNGC	3 cut(s)	32, 158, 288
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	3 cut(s)	7, 78, 297
BmgT120I	GGNCC	6 cut(s)	7, 78, 158, 297, 428, 429
BmiI	GGNNCC	4 cut(s)	9, 298, 430, 453
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	3 cut(s)	42, 223, 412
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	46, 136, 154
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 306
Bse118I	RCCGGY	2 cut(s)	260, 467
BseDI	CCNNGG	3 cut(s)	46, 136, 154
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	293, 306
BseRI	GAGGAG	2 cut(s)	353, 409
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	2 cut(s)	404, 425
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	159, 430
BshNI	GGYRCC	1 cut(s)	451
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	5 cut(s)	237, 261, 290, 307, 468
BslI	CCNNNNNNNGG	2 cut(s)	293, 306
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	159, 430
Bsp120I	GGGCCC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	432
BspACI	CCGC	6 cut(s)	120, 154, 156, 212, 284, 287
BspANI	GGCC	2 cut(s)	159, 430
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	4 cut(s)	9, 298, 430, 453
BspT107I	GGYRCC	1 cut(s)	451
BsrFI	RCCGGY	2 cut(s)	260, 467
BssAI	RCCGGY	2 cut(s)	260, 467
BssECI	CCNNGG	3 cut(s)	46, 136, 154
BssNI	GRCGYC	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	262
BstDSI	CCRYGG	2 cut(s)	46, 154
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	156
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 147, 156, 286
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	159, 430
BtgI	CCRYGG	2 cut(s)	46, 154
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	2 cut(s)	260, 467
Cfr13I	GGNCC	6 cut(s)	7, 78, 158, 297, 428, 429
Cfr42I	CCGCGG	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	2 cut(s)	224, 458
CviJI	RGCY	7 cut(s)	51, 64, 159, 264, 404, 430, 462
CviKI_1	RGCY	7 cut(s)	51, 64, 159, 264, 404, 430, 462
CviQI	GTAC	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	3 cut(s)	7, 78, 297
Eco57I	CTGAAG	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	432
FaeI	CATG	2 cut(s)	227, 461
FaiI	YATR	4 cut(s)	225, 447, 459, 473
FatI	CATG	2 cut(s)	223, 457
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	3 cut(s)	31, 157, 287
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	3 cut(s)	31, 157, 287
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	3 cut(s)	31, 157, 287
GsaI	CCCAGC	2 cut(s)	408, 429
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	159, 430
HapII	CCGG	5 cut(s)	237, 261, 290, 307, 468
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	227, 461
HinfI	GANTC	3 cut(s)	89, 273, 440
HpaII	CCGG	5 cut(s)	237, 261, 290, 307, 468
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	5 cut(s)	7, 109, 219, 301, 421
Hpy188III	TCNNGA	3 cut(s)	86, 204, 268
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	265, 313, 341
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	33, 382, 388
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 147, 156, 286
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	227, 461
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
KspI	CCGCGG	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	42, 223, 412
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	42
MboII	GAAGA	3 cut(s)	96, 124, 220
MfeI	CAATTG	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	2 cut(s)	415, 496
MlyI	GAGTC	2 cut(s)	282, 449
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	5 cut(s)	237, 261, 290, 307, 468
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	496
Mva1269I	GAATGC	1 cut(s)	384
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	36, 147, 156, 286
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	308
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	227, 461
NlaIV	GGNNCC	4 cut(s)	9, 298, 430, 453
NmeAIII	GCCGAG	1 cut(s)	117
NspI	RCATGY	1 cut(s)	227
PciI	ACATGT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	32, 158, 288
PleI	GAGTC	2 cut(s)	281, 448
PpsI	GAGTC	2 cut(s)	281, 448
PscI	ACATGT	1 cut(s)	223
PspFI	CCCAGC	2 cut(s)	404, 425
PspN4I	GGNNCC	4 cut(s)	9, 298, 430, 453
PspOMI	GGGCCC	1 cut(s)	428
PspPI	GGNCC	6 cut(s)	7, 78, 158, 297, 428, 429
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SacII	CCGCGG	1 cut(s)	157
SatI	GCNGC	3 cut(s)	31, 157, 287
Sau96I	GGNCC	6 cut(s)	7, 78, 158, 297, 428, 429
SchI	GAGTC	2 cut(s)	282, 449
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	3 cut(s)	45, 66, 75
SfaNI	GCATC	3 cut(s)	42, 223, 412
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	7, 78, 297
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	2 cut(s)	415, 496
SsiI	CCGC	6 cut(s)	120, 154, 156, 212, 284, 287
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	306
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	87, 180, 327
TasI	AATT	2 cut(s)	415, 496
TauI	GCSGC	2 cut(s)	159, 289
TfiI	GAWTC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	220
VpaK11BI	GGWCC	3 cut(s)	7, 78, 297
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.