Rh5DG343700

callose synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
46866016 .. 46888574
22559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG343700.1

Sequence Viewer

Length: 1449 bp
ATGGGTATCAGCCTATCAGGGGAAGAAGGTAACACTTGCAGTCCACTTCTTTGTTTACCACCTGGAATCCTGGATATAGCTCACCGCAACAAAGACTACTGGTTTATGGACTTTCTTGGGCTCTTGTGGTATCTGTCCTTTCTCATCTTTAAGATGGTTTCTATGCAGAGACGAAGATTTTACACCTACTTTCAGCTCGAGTTCAGGATATTGAAGTTGCTTCTTTTTCTTGGCTACATGTCAATCATGAGCGTCTTGTTTGTATTTTGTGATCTCACTATTTCAGATCTATTTGCTGCTATGCTTGCTTTCTTTCCCACAGGGTGGGCCCCTCTTCAGATAGGACAAGTATGCAGCGTGATGTTCAGGAGCCAAGGATTCTCAGAATCGATAAATGAGTTTGGAAGAGCATACGATTATATAACGGGAGTGATAATCTTCATGCCCATTGCCATTTGTCATGGTTCCTATTTGTATCAAAATGCCAAACACGCTTGCTCTTTAACCAAGCATCAAGTAGAGGCCTATAAAGAGAAGGCAATTGGTGCATTATCAGATCAAATTAGCTTGTCAAATTTCAGAAATAAGACGGGCTTTGCTATGACAGTATCCAATTATCGCGAAGTGTTAAGGAACGCGGACAATAAGAAATGGCAAGCTAGATTAGGGAAAGGCATATACATCAATAGCATTTACATGGAAACATTTGATGCTGAAGAGGAAGCTGCCAGAACTTCTGATATTGCAATGATAAGGGTGAGAGGTAGGAGTGCGTTCCCCAATTTTGATATAAGTCTATATGATGTCCAAGCCATTCTGGATAGCACAACCTTTCCAATAAAAGGTGCTTTGAAGATGTTAAAGCGGAATTCAGTTGATGATGTGCATCAAAAGAGAAGAAAGACTCGCAATGTCTCCAGCTCAACCCTTGGTGCCCCACCATCACTTCACCCAATAGATCAAACTCAAACAACAACAATCAATTCATGCCTTCAGTATCAATTTTTGATCCCTTCCCTCCAAGTTACTGTCCCTCATGGTTACCAAAACCCTACCTCTGAAGCAAACCGAAGTTTCAATCCTCAGTATGACTATGGTGGAAGTGAGCCAACAGCCCAGTTTCAACCTATCATACCCTTACTGATTCAAGAGTTTCCATCTCACCAGTACTCTAACGGCAGTTCCCAGCACCACCTTGATCAAACCCCTAGCTCTCAATTCCTTCACGACACTCAGAACCCTAATCTTGTTGCTAGGTTGAACAATCTAGCAAGTGAAAGCTGTATGGAAGAATTTTCCAGCAGTCAGGTTCATGACGCGAGTTTCAAGATGATGGGGACGAACGAGGGTGGTGCTCATAGTGATGGCAGCAATCAAGTAGTTGGAAATCTTGGTGATCCTGAGGTTGGGCTGGGCAATTCTGACTTGGATCCTGCTAGCTGGCTGTAG

Protein Analysis

482

Amino Acids

54.15

Weight (kDa)

6.11

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 932
AccB7I CCANNNNNTGG 1 cut(s) 324
AccII CGCG 3 cut(s) 621, 638, 1319
AciI CCGC 3 cut(s) 85, 638, 865
AclWI GGATC 4 cut(s) 1003, 1391, 1424, 1437
AcsI RAATTY 3 cut(s) 574, 868, 1292
AcuI CTGAAG 4 cut(s) 320, 735, 977, 1080
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 1 cut(s) 1169
AfiI CCNNNNNNNGG 4 cut(s) 19, 324, 842, 1406
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 7 cut(s) 214, 853, 1078, 1124, 1148, 1261, 1327
AjnI CCWGG 2 cut(s) 61, 69
AluBI AGCT 9 cut(s) 80, 196, 567, 659, 725, 921, 1212, 1281, 1440
AluI AGCT 9 cut(s) 80, 196, 567, 659, 725, 921, 1212, 1281, 1440
Alw21I GWGCWC 1 cut(s) 1357
Alw26I GTCTC 2 cut(s) 163, 919
AlwI GGATC 4 cut(s) 1003, 1391, 1424, 1437
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 2 cut(s) 327, 522
ApaI GGGCCC 1 cut(s) 331
ApeKI GCWGC 4 cut(s) 296, 354, 725, 1368
ApoI RAATTY 3 cut(s) 574, 868, 1292
AspS9I GGNCC 2 cut(s) 327, 328
AsuHPI GGTGA 5 cut(s) 74, 769, 941, 1154, 1406
AsuNHI GCTAGC 1 cut(s) 1436
AvaI CYCGRG 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 1401
BaeGI GKGCMC 2 cut(s) 331, 937
BamHI GGATCC 1 cut(s) 1429
BanI GGYRCC 1 cut(s) 932
BanII GRGCYC 2 cut(s) 123, 331
Bbv12I GWGCWC 1 cut(s) 1357
BbvI GCAGC 4 cut(s) 283, 366, 712, 1380
BccI CCATC 5 cut(s) 148, 949, 1165, 1327, 1358
BceAI ACGGC 1 cut(s) 1192
BcgI CGANNNNNNTGC 2 cut(s) 1334, 1368
BciT130I CCWGG 2 cut(s) 63, 71
BciVI GTATCC 1 cut(s) 619
BclI TGATCA 1 cut(s) 1198
BcoDI GTCTC 2 cut(s) 163, 919
BfaI CTAG 5 cut(s) 660, 1209, 1254, 1268, 1437
BfmI CTRYAG 1 cut(s) 1445
BfuI GTATCC 1 cut(s) 619
BglII AGATCT 1 cut(s) 286
BisI GCNGC 4 cut(s) 297, 355, 726, 1369
BlsI GCNGC 4 cut(s) 298, 356, 727, 1370
BmcAI AGTACT 1 cut(s) 1169
Bme1390I CCNGG 2 cut(s) 63, 71
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 327, 328
BmiI GGNNCC 6 cut(s) 329, 330, 371, 466, 934, 1431
BmrFI CCNGG 2 cut(s) 63, 71
BmrI ACTGGG 1 cut(s) 1111
BmsI GCATC 3 cut(s) 520, 700, 895
BmtI GCTAGC 1 cut(s) 1440
BmuI ACTGGG 1 cut(s) 1111
BpmI CTGGAG 1 cut(s) 901
Bsa29I ATCGAT 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 885
BsaJI CCNNGG 2 cut(s) 373, 928
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 324, 842, 1406
Bse1I ACTGG 3 cut(s) 104, 1117, 1165
Bse21I CCTNAGG 1 cut(s) 1401
Bse3DI GCAATG 3 cut(s) 447, 753, 916
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 2 cut(s) 63, 71
BseCI ATCGAT 1 cut(s) 389
BseDI CCNNGG 2 cut(s) 373, 928
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 4 cut(s) 19, 324, 842, 1406
BseMI GCAATG 3 cut(s) 447, 753, 916
BseMII CTCAG 4 cut(s) 396, 1097, 1247, 1392
BseNI ACTGG 3 cut(s) 104, 1117, 1165
BseSI GKGCMC 2 cut(s) 331, 937
BseXI GCAGC 4 cut(s) 283, 366, 712, 1380
BseYI CCCAGC 2 cut(s) 1185, 1411
Bsh1236I CGCG 3 cut(s) 621, 638, 1319
BshFI GGCC 2 cut(s) 329, 524
BshNI GGYRCC 1 cut(s) 932
BshVI ATCGAT 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 1357
BsiHKCI CYCGRG 1 cut(s) 197
BslFI GGGAC 2 cut(s) 1016, 1351
BslI CCNNNNNNNGG 4 cut(s) 19, 324, 842, 1406
BsmAI GTCTC 2 cut(s) 163, 919
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 1016, 1351
BsnI GGCC 2 cut(s) 329, 524
BsoBI CYCGRG 1 cut(s) 197
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 4 cut(s) 123, 331, 937, 1357
Bsp143I GATC 8 cut(s) 271, 286, 556, 958, 1008, 1198, 1396, 1429
Bsp68I TCGCGA 1 cut(s) 621
BspACI CCGC 3 cut(s) 85, 638, 865
BspANI GGCC 2 cut(s) 329, 524
BspCNI CTCAG 4 cut(s) 395, 1096, 1246, 1393
BspDI ATCGAT 1 cut(s) 389
BspFNI CGCG 3 cut(s) 621, 638, 1319
BspHI TCATGA 2 cut(s) 246, 1312
BspLI GGNNCC 6 cut(s) 329, 330, 371, 466, 934, 1431
BspOI GCTAGC 1 cut(s) 1440
BspPI GGATC 4 cut(s) 1003, 1391, 1424, 1437
BspQI GCTCTTC 1 cut(s) 400
BspT107I GGYRCC 1 cut(s) 932
BsrDI GCAATG 3 cut(s) 447, 753, 916
BsrI ACTGG 3 cut(s) 104, 1117, 1165
BssECI CCNNGG 2 cut(s) 373, 928
BssMI GATC 8 cut(s) 271, 286, 556, 958, 1008, 1198, 1396, 1429
BssT1I CCWWGG 2 cut(s) 373, 928
Bst2UI CCWGG 2 cut(s) 63, 71
Bst4CI ACNGT 2 cut(s) 607, 1030
Bst6I CTCTTC 3 cut(s) 339, 400, 711
BstAPI GCANNNNNTGC 1 cut(s) 545
BstC8I GCNNGC 5 cut(s) 306, 496, 657, 1438, 1442
BstDEI CTNAG 4 cut(s) 382, 1083, 1233, 1401
BstEII GGTNACC 1 cut(s) 1040
BstFNI CGCG 3 cut(s) 621, 638, 1319
BstKTI GATC 8 cut(s) 274, 289, 559, 961, 1011, 1201, 1399, 1432
BstMAI GTCTC 2 cut(s) 163, 919
BstMBI GATC 8 cut(s) 271, 286, 556, 958, 1008, 1198, 1396, 1429
BstMWI GCNNNNNNNGC 3 cut(s) 305, 491, 545
BstNI CCWGG 2 cut(s) 63, 71
BstNSI RCATGY 1 cut(s) 241
BstPI GGTNACC 1 cut(s) 1040
BstSCI CCNGG 2 cut(s) 61, 69
BstSFI CTRYAG 1 cut(s) 1445
BstSLI GKGCMC 2 cut(s) 331, 937
BstUI CGCG 3 cut(s) 621, 638, 1319
BstV1I GCAGC 4 cut(s) 283, 366, 712, 1380
BstX2I RGATCY 2 cut(s) 286, 1429
BstYI RGATCY 2 cut(s) 286, 1429
Bsu15I ATCGAT 1 cut(s) 389
Bsu36I CCTNAGG 1 cut(s) 1401
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 2 cut(s) 329, 524
BsuTUI ATCGAT 1 cut(s) 389
BtuMI TCGCGA 1 cut(s) 621
Cac8I GCNNGC 5 cut(s) 306, 496, 657, 1438, 1442
CciI TCATGA 2 cut(s) 246, 1312
Cfr13I GGNCC 2 cut(s) 327, 328
ClaI ATCGAT 1 cut(s) 389
CseI GACGC 2 cut(s) 241, 1325
Csp6I GTAC 1 cut(s) 1168
CviAII CATG 8 cut(s) 238, 247, 442, 461, 697, 987, 1037, 1313
CviQI GTAC 1 cut(s) 1168
DdeI CTNAG 4 cut(s) 382, 1083, 1233, 1401
DpnI GATC 8 cut(s) 273, 288, 558, 960, 1010, 1200, 1398, 1431
DpnII GATC 8 cut(s) 271, 286, 556, 958, 1008, 1198, 1396, 1429
DraIII CACNNNGTG 1 cut(s) 324
Eam1104I CTCTTC 3 cut(s) 339, 400, 711
EarI CTCTTC 3 cut(s) 339, 400, 711
Eco130I CCWWGG 2 cut(s) 373, 928
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 2 cut(s) 123, 331
Eco57I CTGAAG 4 cut(s) 320, 735, 977, 1080
Eco81I CCTNAGG 1 cut(s) 1401
Eco88I CYCGRG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 328
EcoO65I GGTNACC 1 cut(s) 1040
EcoRI GAATTC 1 cut(s) 868
EcoRII CCWGG 2 cut(s) 61, 69
EcoT14I CCWWGG 2 cut(s) 373, 928
EcoT38I GRGCYC 2 cut(s) 123, 331
ErhI CCWWGG 2 cut(s) 373, 928
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 8 cut(s) 241, 250, 445, 464, 700, 990, 1040, 1316
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FaqI GGGAC 2 cut(s) 1016, 1351
FatI CATG 8 cut(s) 237, 246, 441, 460, 696, 986, 1036, 1312
FbaI TGATCA 1 cut(s) 1198
Fnu4HI GCNGC 4 cut(s) 297, 355, 726, 1369
FriOI GRGCYC 2 cut(s) 123, 331
Fsp4HI GCNGC 4 cut(s) 297, 355, 726, 1369
FspBI CTAG 5 cut(s) 660, 1209, 1254, 1268, 1437
GluI GCNGC 4 cut(s) 297, 355, 726, 1369
GsaI CCCAGC 2 cut(s) 1189, 1415
GsuI CTGGAG 1 cut(s) 901
HaeIII GGCC 2 cut(s) 329, 524
HgaI GACGC 2 cut(s) 241, 1325
Hin1II CATG 8 cut(s) 241, 250, 445, 464, 700, 990, 1040, 1316
HinfI GANTC 5 cut(s) 66, 378, 386, 904, 1144
HphI GGTGA 5 cut(s) 74, 769, 941, 1154, 1406
Hpy166II GTNNAC 2 cut(s) 44, 56
Hpy188I TCNGA 9 cut(s) 286, 339, 385, 556, 581, 739, 1060, 1236, 1423
Hpy8I GTNNAC 2 cut(s) 44, 56
HpyAV CCTTC 5 cut(s) 20, 529, 1001, 1023, 1232
HpyCH4III ACNGT 2 cut(s) 607, 1030
HpyCH4V TGCA 6 cut(s) 39, 166, 354, 548, 746, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 491, 545
HpyF3I CTNAG 4 cut(s) 382, 1083, 1233, 1401
Hsp92II CATG 8 cut(s) 241, 250, 445, 464, 700, 990, 1040, 1316
Ksp22I TGATCA 1 cut(s) 1198
Kzo9I GATC 8 cut(s) 271, 286, 556, 958, 1008, 1198, 1396, 1429
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 4 cut(s) 283, 366, 712, 1380
LweI GCATC 3 cut(s) 520, 700, 895
MaeI CTAG 5 cut(s) 660, 1209, 1254, 1268, 1437
MaeIII GTNAC 3 cut(s) 29, 1024, 1040
MalI GATC 8 cut(s) 273, 288, 558, 960, 1010, 1200, 1398, 1431
MboI GATC 8 cut(s) 271, 286, 556, 958, 1008, 1198, 1396, 1429
MboII GAAGA 9 cut(s) 35, 186, 326, 417, 430, 728, 865, 909, 1301
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 2 cut(s) 286, 1429
MhlI GDGCHC 4 cut(s) 123, 331, 937, 1357
MlyI GAGTC 1 cut(s) 898
MmeI TCCRAC 1 cut(s) 1363
MseI TTAA 4 cut(s) 150, 503, 629, 860
MslI CAYNNNNRTG 2 cut(s) 695, 1362
MspR9I CCNGG 2 cut(s) 63, 71
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 2 cut(s) 63, 71
MvnI CGCG 3 cut(s) 621, 638, 1319
MwoI GCNNNNNNNGC 3 cut(s) 305, 491, 545
NdeII GATC 8 cut(s) 271, 286, 556, 958, 1008, 1198, 1396, 1429
NheI GCTAGC 1 cut(s) 1436
NlaIII CATG 8 cut(s) 241, 250, 445, 464, 700, 990, 1040, 1316
NlaIV GGNNCC 6 cut(s) 329, 330, 371, 466, 934, 1431
NruI TCGCGA 1 cut(s) 621
NspI RCATGY 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 197
PagI TCATGA 2 cut(s) 246, 1312
PceI AGGCCT 1 cut(s) 524
PciI ACATGT 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 400
PfeI GAWTC 4 cut(s) 66, 378, 386, 1144
PflMI CCANNNNNTGG 1 cut(s) 324
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 4 cut(s) 298, 356, 727, 1370
PleI GAGTC 1 cut(s) 898
PpsI GAGTC 1 cut(s) 898
PscI ACATGT 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 61, 69
PspEI GGTNACC 1 cut(s) 1040
PspFI CCCAGC 2 cut(s) 1185, 1411
PspGI CCWGG 2 cut(s) 61, 69
PspN4I GGNNCC 6 cut(s) 329, 330, 371, 466, 934, 1431
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 2 cut(s) 327, 328
PspXI VCTCGAGB 1 cut(s) 197
PsuI RGATCY 2 cut(s) 286, 1429
RruI TCGCGA 1 cut(s) 621
RsaI GTAC 1 cut(s) 1169
RsaNI GTAC 1 cut(s) 1168
RseI CAYNNNNRTG 2 cut(s) 695, 1362
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 4 cut(s) 150, 503, 629, 860
SatI GCNGC 4 cut(s) 297, 355, 726, 1369
Sau3AI GATC 8 cut(s) 271, 286, 556, 958, 1008, 1198, 1396, 1429
Sau96I GGNCC 2 cut(s) 327, 328
ScaI AGTACT 1 cut(s) 1169
SchI GAGTC 1 cut(s) 898
ScrFI CCNGG 2 cut(s) 63, 71
SduI GDGCHC 4 cut(s) 123, 331, 937, 1357
SfaNI GCATC 3 cut(s) 520, 700, 895
SfcI CTRYAG 1 cut(s) 1445
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 2 cut(s) 695, 1362
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 3 cut(s) 85, 638, 865
SspMI CTAG 5 cut(s) 660, 1209, 1254, 1268, 1437
StuI AGGCCT 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 61, 69
StyI CCWWGG 2 cut(s) 373, 928
TaaI ACNGT 2 cut(s) 607, 1030
TaqI TCGA 2 cut(s) 198, 389
TatI WGTACW 1 cut(s) 1167
TfiI GAWTC 4 cut(s) 66, 378, 386, 1144
Tru1I TTAA 4 cut(s) 150, 503, 629, 860
Tru9I TTAA 4 cut(s) 150, 503, 629, 860
TseI GCWGC 4 cut(s) 296, 354, 725, 1368
TspDTI ATGAA 3 cut(s) 430, 975, 1301
Van91I CCANNNNNTGG 1 cut(s) 324
XapI RAATTY 3 cut(s) 574, 868, 1292
XceI RCATGY 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 197
XspI CTAG 5 cut(s) 660, 1209, 1254, 1268, 1437
ZrmI AGTACT 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.