Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

23215991 .. 23218674

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGTTTCCATAATGGATATTCTCCATAACCTATGGTTGACTATCAAATATGAATTTGCTCTGTACCCAGGACATTTTGAAGCATTTCTATGGGATAATTCTGATCCACAAGTGAAAGGCAAGACAGGCGGATTTCGAGAAGAAGAGCAAGCTGCCAGAGCACATGATCTAGCTGCTTTGAAGTATTGGGGCGACTCTACCCCATTAAACTTCCCTGTGAGTGATTACATGAAGGAATTGGAGGAAATGCAAGCATATACAAAGAAAGACTATTTGCTCCATATTCGGAGATGGCAAGCCAGATTAGGCAAAGGCAAAGACACGAAAGGCCTTTATGTGGGAACATTTGATACTCAAGAGGAAGCAGCAAGGGCTTATGATATTGCAGTAATAAAATGTAGAGGAGGGCGGGAAGCAGTGACCAATTTTGATCTAAGCCACTATGATGTCGAAGGTATTCTTGAGAGCCCAAATATTCCAATTGAAAATGGAGCTTCAAAGTTCATAAGGTGGACTGCGGCTGATCATATCATCCAGAGCAGAAGAACCACTCACAATGTTGCCGTTTCACAACTACAAGTTGACAGCTCGGGTAATAACCCTAATATAACCCCAATAGCCCCACCATTATTTGAGCCAACAGTGCAATCCCTAGAAACCCATTGCAATTCAAACCCAGAAGAACAATATCCATGCCCCTCCCTCAATCCCAACCAAAATAATGACCAGATCCAAATATTCCAATTCCCGCAGTACTTTAAAAACCCTAACTTTGAATTTGATCATCTTCCTTGCTACCAGAAACCTAATTTCCCAATAAACCCTAGTTTCGATAATTCGGGTAACCATAGTGAAAAGCAGATAGTGCCATCACTCCAGTTTCAACCTATTCTGACCCCAGAGAACCACGAGCTTCAGTTTCATCAGTATAACAGTGATAATTCCCAGCCCCATATGCCTCAAAACCCTAGCTCCTGCAGTCTTCAAGACTTTCAGAACCCTAATTGCCATGAAGACCCTAATATTTTTAGTGAGTTGACTAACCTTCAAAGTGGTAGCGATATAAGGGAATTTCCCAGTGGTCAGGAACCAGTGGCGAGCTTCCCAATGATGGGGACGAACGAGAGTCACTGTGATTGCACCCATACAGTAGAGGAAAATAGAAATTTTGCTGAAGACTTTAGGGTGGACAATCCAGACTTGGACATTTCATCTAGCAGCTGGTTCGAAATGTTAATGACCTTAAACAGTTCTGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

420

Amino Acids

48.01

Weight (kDa)

4.79

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	129, 409, 518, 749
AclWI	GGATC	2 cut(s)	98, 724
AcsI	RAATTY	4 cut(s)	53, 776, 1070, 1165
AcuI	CTGAAG	2 cut(s)	899, 1194
AfaI	GTAC	2 cut(s)	65, 755
AfiI	CCNNNNNNNGG	3 cut(s)	337, 1111, 1112
AgsI	TTSAA	9 cut(s)	80, 181, 485, 498, 672, 776, 884, 986, 1049
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	8 cut(s)	152, 173, 494, 588, 913, 972, 1101, 1221
AluI	AGCT	8 cut(s)	152, 173, 494, 588, 913, 972, 1101, 1221
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	2 cut(s)	98, 724
Ama87I	CYCGRG	1 cut(s)	589
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	4 cut(s)	152, 173, 365, 1218
ApoI	RAATTY	4 cut(s)	53, 776, 1070, 1165
Asp700I	GAANNNNTTC	2 cut(s)	84, 456
AsuII	TTCGAA	1 cut(s)	1227
AvaI	CYCGRG	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	908
BbsI	GAAGAC	3 cut(s)	974, 1020, 1182
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	139, 160, 377, 1230
BccI	CCATC	3 cut(s)	285, 877, 1105
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	2 cut(s)	1207, 1241
BciT130I	CCWGG	1 cut(s)	69
BclI	TGATCA	2 cut(s)	523, 781
BfaI	CTAG	5 cut(s)	170, 653, 825, 969, 1215
BfmI	CTRYAG	1 cut(s)	976
BisI	GCNGC	5 cut(s)	153, 174, 366, 519, 1219
BlsI	GCNGC	5 cut(s)	154, 175, 367, 520, 1220
BmcAI	AGTACT	1 cut(s)	755
Bme1390I	CCNGG	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	1089
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	1071
BmuI	ACTGGG	1 cut(s)	1071
BpiI	GAAGAC	3 cut(s)	974, 1020, 1182
BpmI	CTGGAG	1 cut(s)	860
Bpu14I	TTCGAA	1 cut(s)	1227
BpuEI	CTTGAG	2 cut(s)	339, 482
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	956, 986
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 1111, 1112
Bse1I	ACTGG	3 cut(s)	877, 1077, 1091
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	3 cut(s)	337, 1111, 1112
BseMI	GCAATG	1 cut(s)	661
BseNI	ACTGG	3 cut(s)	877, 1077, 1091
BseRI	GAGGAG	1 cut(s)	417
BseXI	GCAGC	4 cut(s)	139, 160, 377, 1230
BseYI	CCCAGC	1 cut(s)	945
BshFI	GGCC	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	589
BslFI	GGGAC	1 cut(s)	1129
BslI	CCNNNNNNNGG	3 cut(s)	337, 1111, 1112
BsmFI	GGGAC	1 cut(s)	1129
BsnI	GGCC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	589
Bsp119I	TTCGAA	1 cut(s)	1227
Bsp1286I	GDGCHC	2 cut(s)	163, 470
Bsp143I	GATC	6 cut(s)	103, 166, 430, 523, 729, 781
BspACI	CCGC	4 cut(s)	129, 409, 518, 749
BspANI	GGCC	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	1089
BspMAI	CTGCAG	1 cut(s)	980
BspPI	GGATC	2 cut(s)	98, 724
BspQI	GCTCTTC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	1227
BsrDI	GCAATG	1 cut(s)	661
BsrI	ACTGG	3 cut(s)	877, 1077, 1091
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	6 cut(s)	103, 166, 430, 523, 729, 781
BssSI	CACGAG	1 cut(s)	908
Bst2BI	CACGAG	1 cut(s)	908
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	5 cut(s)	643, 935, 1133, 1150, 1250
Bst6I	CTCTTC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	865
BstBI	TTCGAA	1 cut(s)	1227
BstC8I	GCNNGC	4 cut(s)	150, 252, 297, 1099
BstDEI	CTNAG	1 cut(s)	434
BstEII	GGTNACC	1 cut(s)	842
BstF5I	GGATG	1 cut(s)	531
BstKTI	GATC	6 cut(s)	106, 169, 433, 526, 732, 784
BstMBI	GATC	6 cut(s)	103, 166, 430, 523, 729, 781
BstMWI	GCNNNNNNNGC	6 cut(s)	126, 158, 371, 643, 865, 955
BstNI	CCWGG	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	842
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	976
BstV1I	GCAGC	4 cut(s)	139, 160, 377, 1230
BstV2I	GAAGAC	3 cut(s)	974, 1020, 1182
BstX2I	RGATCY	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	531
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	6 cut(s)	423, 648, 940, 1084, 1098, 1129
Cac8I	GCNNGC	4 cut(s)	150, 252, 297, 1099
Csp6I	GTAC	2 cut(s)	64, 754
CviAII	CATG	4 cut(s)	164, 229, 693, 1010
CviQI	GTAC	2 cut(s)	64, 754
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	6 cut(s)	105, 168, 432, 525, 731, 783
DpnII	GATC	6 cut(s)	103, 166, 430, 523, 729, 781
DraI	TTTAAA	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	470
Eco57I	CTGAAG	2 cut(s)	899, 1194
Eco88I	CYCGRG	1 cut(s)	589
Eco91I	GGTNACC	1 cut(s)	842
EcoO65I	GGTNACC	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	470
FaeI	CATG	4 cut(s)	167, 232, 696, 1013
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FaqI	GGGAC	1 cut(s)	1129
FatI	CATG	4 cut(s)	163, 228, 692, 1009
FauI	CCCGC	2 cut(s)	402, 756
FauNDI	CATATG	1 cut(s)	954
FbaI	TGATCA	2 cut(s)	523, 781
Fnu4HI	GCNGC	5 cut(s)	153, 174, 366, 519, 1219
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	5 cut(s)	153, 174, 366, 519, 1219
FspBI	CTAG	5 cut(s)	170, 653, 825, 969, 1215
GluI	GCNGC	5 cut(s)	153, 174, 366, 519, 1219
GsaI	CCCAGC	1 cut(s)	949
GsuI	CTGGAG	1 cut(s)	860
HaeIII	GGCC	1 cut(s)	330
Hin1II	CATG	4 cut(s)	167, 232, 696, 1013
HincII	GTYRAC	3 cut(s)	39, 583, 1038
HindII	GTYRAC	3 cut(s)	39, 583, 1038
HinfI	GANTC	2 cut(s)	194, 1126
Hpy166II	GTNNAC	5 cut(s)	39, 513, 583, 1038, 1189
Hpy188I	TCNGA	6 cut(s)	103, 288, 894, 996, 1255, 1262
Hpy188III	TCNNGA	7 cut(s)	137, 356, 461, 535, 986, 1085, 1196
Hpy8I	GTNNAC	5 cut(s)	39, 513, 583, 1038, 1189
HpyAV	CCTTC	3 cut(s)	226, 446, 1055
HpyCH4III	ACNGT	5 cut(s)	643, 935, 1133, 1150, 1250
HpyCH4V	TGCA	6 cut(s)	250, 386, 646, 666, 978, 1140
HpyF10VI	GCNNNNNNNGC	6 cut(s)	126, 158, 371, 643, 865, 955
HpyF3I	CTNAG	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	167, 232, 696, 1013
Ksp22I	TGATCA	2 cut(s)	523, 781
Kzo9I	GATC	6 cut(s)	103, 166, 430, 523, 729, 781
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	3 cut(s)	282, 491, 977
Lsp1109I	GCAGC	4 cut(s)	139, 160, 377, 1230
MaeI	CTAG	5 cut(s)	170, 653, 825, 969, 1215
MaeIII	GTNAC	3 cut(s)	418, 842, 1127
MalI	GATC	6 cut(s)	105, 168, 432, 525, 731, 783
MboI	GATC	6 cut(s)	103, 166, 430, 523, 729, 781
MboII	GAAGA	8 cut(s)	152, 155, 555, 692, 779, 974, 1025, 1187
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	2 cut(s)	163, 470
MlyI	GAGTC	2 cut(s)	188, 1135
MnlI	CCTC	8 cut(s)	235, 352, 395, 398, 709, 713, 969, 1147
MroXI	GAANNNNTTC	2 cut(s)	84, 456
MseI	TTAA	4 cut(s)	206, 759, 1235, 1244
MslI	CAYNNNNRTG	2 cut(s)	88, 444
MspA1I	CMGCKG	1 cut(s)	1221
MspR9I	CCNGG	1 cut(s)	69
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	6 cut(s)	126, 158, 371, 643, 865, 955
NdeI	CATATG	1 cut(s)	954
NdeII	GATC	6 cut(s)	103, 166, 430, 523, 729, 781
NlaIII	CATG	4 cut(s)	167, 232, 696, 1013
NlaIV	GGNNCC	1 cut(s)	1089
NmuCI	GTSAC	2 cut(s)	418, 1127
NspV	TTCGAA	1 cut(s)	1227
PceI	AGGCCT	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	138
PdmI	GAANNNNTTC	2 cut(s)	84, 456
PkrI	GCNGC	5 cut(s)	154, 175, 367, 520, 1220
PleI	GAGTC	2 cut(s)	188, 1134
PpsI	GAGTC	2 cut(s)	188, 1134
Psp6I	CCWGG	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	842
PspFI	CCCAGC	1 cut(s)	945
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	1089
PsrI	GAACNNNNNNTAC	2 cut(s)	334, 366
PstI	CTGCAG	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	729
PvuII	CAGCTG	1 cut(s)	1221
RsaI	GTAC	2 cut(s)	65, 755
RsaNI	GTAC	2 cut(s)	64, 754
RseI	CAYNNNNRTG	2 cut(s)	88, 444
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	206, 759, 1235, 1244
SatI	GCNGC	5 cut(s)	153, 174, 366, 519, 1219
Sau3AI	GATC	6 cut(s)	103, 166, 430, 523, 729, 781
ScaI	AGTACT	1 cut(s)	755
SchI	GAGTC	2 cut(s)	188, 1135
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	163, 470
SfcI	CTRYAG	1 cut(s)	976
SfuI	TTCGAA	1 cut(s)	1227
SmiMI	CAYNNNNRTG	2 cut(s)	88, 444
SmlI	CTYRAG	2 cut(s)	354, 461
SmoI	CTYRAG	2 cut(s)	354, 461
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	4 cut(s)	129, 409, 518, 749
SspI	AATATT	3 cut(s)	475, 738, 1024
SspMI	CTAG	5 cut(s)	170, 653, 825, 969, 1215
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	5 cut(s)	643, 935, 1133, 1150, 1250
TaqI	TCGA	4 cut(s)	136, 450, 831, 1227
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	521
Tru1I	TTAA	4 cut(s)	206, 759, 1235, 1244
Tru9I	TTAA	4 cut(s)	206, 759, 1235, 1244
TscAI	CASTG	6 cut(s)	423, 648, 940, 1084, 1098, 1136
TseFI	GTSAC	2 cut(s)	418, 1127
TseI	GCWGC	4 cut(s)	152, 173, 365, 1218
Tsp45I	GTSAC	2 cut(s)	418, 1127
TspDTI	ATGAA	6 cut(s)	66, 245, 493, 911, 1026, 1200
TspRI	CASTG	6 cut(s)	423, 648, 940, 1084, 1098, 1136
XapI	RAATTY	4 cut(s)	53, 776, 1070, 1165
XmnI	GAANNNNTTC	2 cut(s)	84, 456
XspI	CTAG	5 cut(s)	170, 653, 825, 969, 1215
ZrmI	AGTACT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.