Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Forward (+)

48043956 .. 48045108

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G030350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACAGTATCCAATTATCGCGAAGTGTTGACGAACGCGGACAATAAGAAATGGCAAGCTAGATTAGGGAAAGGCATATACATCAATAGCATTTACATGGAAACATTTGATGCTGAAGAGGAAGCTGCCAGAGCTTATGATATTGCAATGACAAGGGTGAGAGGTAGGAGTGCGTTCCCCAATTTTGATATAAGTCTATTCCAAGCCATTCTGGATGGCACAACCTTTCCAATAAAAGGTGCTTTGAAGATGTTAAAGCGGAATTCAGTTGATGATGTGCATCAAAAGAGAAGAAAGACTAGCAATGTCTCCAGCTCAACCCTTGGTGCCCCACCATCACTTCACCCAATAGATCAAACTCAAACAACAACAATCAATTCATGCCTTCAGTATCAATTTTTGATCCCTTCCCTCCAAGTTACTGTCCCTCATGGTTACCAAAACCCTACCTCTGAAGCAAACCGAAGTTTCAATCCTCAGTATGACTATGGTGGAATTGAGCCAATAGCCCAGTTTGAACCTATCATACCCTTACTGAATCAAGAGTTTCCATCTCACCAGTACTCTAACGGCAGTTCCCAGCACCACCTTGATCAAATCCCTAGGTCTCAATTCCTTCAAGACACTCAGAACCCTAATCTTGTTGCTAGGTTGAGTGAAAGCTGTATGGAAGAATTTTCCAGCAGTCAGGTTCATGACGCAAGTTTCAAGATGATGGGGACGAACGAGGGTGGTGCTCATAGTGATGGCAGCAATCAAGTAGTTGGAAATCTTGGTGATCCTGAGGTTGGGCTGGGCAATTCTGACTTGGACCCTGCTAGCTGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

276

Amino Acids

30.65

Weight (kDa)

5.32

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccII	CGCG	2 cut(s)	21, 38
AciI	CCGC	2 cut(s)	38, 259
AclWI	GGATC	2 cut(s)	397, 773
AcsI	RAATTY	2 cut(s)	262, 674
AcuI	CTGAAG	3 cut(s)	135, 371, 474
AfaI	GTAC	1 cut(s)	563
AfiI	CCNNNNNNNGG	2 cut(s)	236, 788
AgsI	TTSAA	5 cut(s)	247, 472, 518, 620, 709
AluBI	AGCT	6 cut(s)	59, 125, 134, 315, 663, 822
AluI	AGCT	6 cut(s)	59, 125, 134, 315, 663, 822
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	2 cut(s)	313, 612
AlwI	GGATC	2 cut(s)	397, 773
ApeKI	GCWGC	2 cut(s)	125, 750
ApoI	RAATTY	2 cut(s)	262, 674
AspA2I	CCTAGG	1 cut(s)	602
AspS9I	GGNCC	1 cut(s)	811
AsuHPI	GGTGA	4 cut(s)	169, 335, 548, 788
AsuNHI	GCTAGC	1 cut(s)	818
AvaII	GGWCC	1 cut(s)	811
AvrII	CCTAGG	1 cut(s)	602
AxyI	CCTNAGG	1 cut(s)	783
BaeGI	GKGCMC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	2 cut(s)	112, 762
BccI	CCATC	5 cut(s)	209, 343, 559, 709, 740
BceAI	ACGGC	1 cut(s)	586
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciVI	GTATCC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	313, 612
BfaI	CTAG	5 cut(s)	60, 300, 603, 648, 819
BfuI	GTATCC	1 cut(s)	19
BisI	GCNGC	2 cut(s)	126, 751
BlnI	CCTAGG	1 cut(s)	602
BlsI	GCNGC	2 cut(s)	127, 752
BmcAI	AGTACT	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	811
BmgT120I	GGNCC	1 cut(s)	811
BmiI	GGNNCC	2 cut(s)	328, 813
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	100, 289
BmtI	GCTAGC	1 cut(s)	822
BmuI	ACTGGG	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	322, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 788
Bse1I	ACTGG	2 cut(s)	511, 559
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	2 cut(s)	153, 310
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	322, 602
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	236, 788
BseMI	GCAATG	2 cut(s)	153, 310
BseMII	CTCAG	3 cut(s)	491, 641, 774
BseNI	ACTGG	2 cut(s)	511, 559
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	112, 762
BseYI	CCCAGC	2 cut(s)	579, 793
Bsh1236I	CGCG	2 cut(s)	21, 38
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	739
BslFI	GGGAC	2 cut(s)	410, 733
BslI	CCNNNNNNNGG	2 cut(s)	236, 788
BsmAI	GTCTC	2 cut(s)	313, 612
BsmFI	GGGAC	2 cut(s)	410, 733
Bso31I	GGTCTC	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	331, 739
Bsp143I	GATC	4 cut(s)	352, 402, 592, 778
Bsp68I	TCGCGA	1 cut(s)	21
BspACI	CCGC	2 cut(s)	38, 259
BspCNI	CTCAG	3 cut(s)	490, 640, 775
BspFNI	CGCG	2 cut(s)	21, 38
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	2 cut(s)	328, 813
BspOI	GCTAGC	1 cut(s)	822
BspPI	GGATC	2 cut(s)	397, 773
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	2 cut(s)	153, 310
BsrI	ACTGG	2 cut(s)	511, 559
BssECI	CCNNGG	2 cut(s)	322, 602
BssMI	GATC	4 cut(s)	352, 402, 592, 778
BssT1I	CCWWGG	2 cut(s)	322, 602
Bst4CI	ACNGT	2 cut(s)	7, 424
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	57, 820, 824
BstDEI	CTNAG	3 cut(s)	477, 627, 783
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	2 cut(s)	21, 38
BstKTI	GATC	4 cut(s)	355, 405, 595, 781
BstMAI	GTCTC	2 cut(s)	313, 612
BstMBI	GATC	4 cut(s)	352, 402, 592, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	331
BstUI	CGCG	2 cut(s)	21, 38
BstV1I	GCAGC	2 cut(s)	112, 762
Bsu36I	CCTNAGG	1 cut(s)	783
BsuI	GTATCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	220
BtuMI	TCGCGA	1 cut(s)	21
Cac8I	GCNNGC	3 cut(s)	57, 820, 824
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	811
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	4 cut(s)	97, 381, 431, 695
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	3 cut(s)	477, 627, 783
DpnI	GATC	4 cut(s)	354, 404, 594, 780
DpnII	GATC	4 cut(s)	352, 402, 592, 778
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	322, 602
Eco31I	GGTCTC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	811
Eco57I	CTGAAG	3 cut(s)	135, 371, 474
Eco81I	CCTNAGG	1 cut(s)	783
Eco91I	GGTNACC	1 cut(s)	434
EcoO65I	GGTNACC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	262
EcoT14I	CCWWGG	2 cut(s)	322, 602
ErhI	CCWWGG	2 cut(s)	322, 602
FaeI	CATG	4 cut(s)	100, 384, 434, 698
FaqI	GGGAC	2 cut(s)	410, 733
FatI	CATG	4 cut(s)	96, 380, 430, 694
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	126, 751
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	126, 751
FspBI	CTAG	5 cut(s)	60, 300, 603, 648, 819
GluI	GCNGC	2 cut(s)	126, 751
GsaI	CCCAGC	2 cut(s)	583, 797
GsuI	CTGGAG	1 cut(s)	295
HgaI	GACGC	1 cut(s)	707
Hin1II	CATG	4 cut(s)	100, 384, 434, 698
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	538
HphI	GGTGA	4 cut(s)	169, 335, 548, 788
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	3 cut(s)	454, 630, 805
Hpy188III	TCNNGA	7 cut(s)	20, 212, 542, 620, 695, 709, 782
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	3 cut(s)	395, 417, 626
HpyCH4III	ACNGT	2 cut(s)	7, 424
HpyCH4V	TGCA	2 cut(s)	146, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	477, 627, 783
Hsp92II	CATG	4 cut(s)	100, 384, 434, 698
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	352, 402, 592, 778
Lsp1109I	GCAGC	2 cut(s)	112, 762
LweI	GCATC	2 cut(s)	100, 289
MaeI	CTAG	5 cut(s)	60, 300, 603, 648, 819
MaeIII	GTNAC	2 cut(s)	418, 434
MalI	GATC	4 cut(s)	354, 404, 594, 780
MboI	GATC	4 cut(s)	352, 402, 592, 778
MboII	GAAGA	4 cut(s)	128, 259, 303, 683
MhlI	GDGCHC	2 cut(s)	331, 739
MluCI	AATT	9 cut(s)	13, 181, 262, 376, 395, 495, 611, 674, 799
MmeI	TCCRAC	1 cut(s)	745
MnlI	CCTC	8 cut(s)	112, 155, 422, 438, 460, 486, 721, 778
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	2 cut(s)	95, 744
MvnI	CGCG	2 cut(s)	21, 38
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	4 cut(s)	352, 402, 592, 778
NheI	GCTAGC	1 cut(s)	818
NlaIII	CATG	4 cut(s)	100, 384, 434, 698
NlaIV	GGNNCC	2 cut(s)	328, 813
NruI	TCGCGA	1 cut(s)	21
PagI	TCATGA	1 cut(s)	694
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	2 cut(s)	127, 752
PspEI	GGTNACC	1 cut(s)	434
PspFI	CCCAGC	2 cut(s)	579, 793
PspN4I	GGNNCC	2 cut(s)	328, 813
PspPI	GGNCC	1 cut(s)	811
PsrI	GAACNNNNNNTAC	2 cut(s)	510, 542
RruI	TCGCGA	1 cut(s)	21
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
RseI	CAYNNNNRTG	2 cut(s)	95, 744
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	126, 751
Sau3AI	GATC	4 cut(s)	352, 402, 592, 778
Sau96I	GGNCC	1 cut(s)	811
ScaI	AGTACT	1 cut(s)	563
SduI	GDGCHC	2 cut(s)	331, 739
SfaNI	GCATC	2 cut(s)	100, 289
SinI	GGWCC	1 cut(s)	811
SmiMI	CAYNNNNRTG	2 cut(s)	95, 744
Sse9I	AATT	9 cut(s)	13, 181, 262, 376, 395, 495, 611, 674, 799
SsiI	CCGC	2 cut(s)	38, 259
SspMI	CTAG	5 cut(s)	60, 300, 603, 648, 819
StyI	CCWWGG	2 cut(s)	322, 602
TaaI	ACNGT	2 cut(s)	7, 424
TasI	AATT	9 cut(s)	13, 181, 262, 376, 395, 495, 611, 674, 799
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	2 cut(s)	125, 750
TspDTI	ATGAA	2 cut(s)	369, 683
VpaK11BI	GGWCC	1 cut(s)	811
XapI	RAATTY	2 cut(s)	262, 674
XmaJI	CCTAGG	1 cut(s)	602
XspI	CTAG	5 cut(s)	60, 300, 603, 648, 819
ZrmI	AGTACT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.