Rw3G021360

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
25760522 .. 25763354
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021360.1

Sequence Viewer

Length: 1509 bp
ATGTCGATGAACAGAGATAGCTTCCGTTTCCATTCTTCCGAGTCCATGGACAGCAATTTATACTTGCAGCCTGATAACCCATTTCAACTTCCAAGTTCCATAAGAGATGCGCCACATGACTGTAATTTTACTGTTGCTAACTATCCAGTTCCACCACAATTGCCTTTGGGAGGTTATGAGGGTTTTATAACTGGGGCAAACAACAGCACTTATGGAGGGAAACAAACTAGCCACAATTTACTCAACAACGAGACCAGTGCTAGTGGAAATGGAACAAATTCTGCGGCTACCAAACATAAACGATCCCAAAGAAAAGGCAAATCATTTGGTAACAGTAGCTCCATGTATCGAGGTGTTACAAAGTACGAAAATGGACGATGTGAAGCATTTATATGGGATAACACGGATCCAGAAGAGAAATCCAAGACAAGTGGATTTGAAGTAGAAGAGGATGCAGCTAGAGCTCATGACCTAGCTGCTCTAAAATTATGGGGAGAGTCTGCGAGTTTGAATTTTCCGTTAAGCAACTACGTGAATGACCTGGAAGAAATGAAGTCATTTACGAAGAAGGAATACCTTCTACACATCAGAAGAAGCAAGACGGGTTTAGCCAAGACGGTATCCAATTACCGTGGAGTTTCGAGGAACGCGCACAACAAAAAATGGCAAGTTAGGTTAGGAAAAGGAAAAGACATTGATAGCATTTATGTTGGAACATTTGATACCGAAGAGCAAGCCGCCGAAGCATATGACGTTGCAGCTATAAGGGTGAAAGGGCCGAAGGCAATCACCAATTTTGATAAAAGTAACTACGATGTCAAACAGATTCTTGAAAGCCCAAAATTTCTAATTGATAAAGGTGCATCGAAGACGTTGAAGCGAAGTTCAGTTGATGATGTGCTTCAAAAGAGAAGAAAGACTCGCAGTGACTCCAGCTCAACCCTTAGTGCCCCACCATCACTTCACCCAATAGATCAAACTCAACCAACGGTAATCGATTCAAGCCTTCAATATCAATTTCCGATTCCTTACCTCCAAGTCGCAGTCCCTTACGGTTACCAAAACCCTATCTTTGAAGCAAACCGAAGTTTCAGTCCTCAGTATGACTATGGTGGAAGTGAGCCAATAGCCCAGCTTCAACCTACCATACCCTTATTGAATCAAGAGTTTCCATCTCATCAGTATTGTAACAGCAATTCCCAGCACCACCTTGATCAAACCCCTAGCTCCCAGTTCCTTCAAGACACTCAGAATCCTAATCTTGTTGCTGGGTTGAACAACCTTGCAAGTGATAGCTGTATGGAAGAATTTTCTAGCAGTCAGGTTCATGAGGCGAGTTCCGAGATGATAGGGCCGAACGAGGGTGGCGCTCATGGTGATGGTAGCAGTCATGCAGATGGAAATCTTGGTGATCCTGTGTTTGGGCTGGGCAATTCTGACTTGGATCCTGCGAGCTGGCTAGAAACGTTCTTGAGGATGAGCCCACAATGTCCTGATTCTATGGTGTGA

Protein Analysis

502

Amino Acids

55.46

Weight (kDa)

5.72

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 208 - 259 3.8e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AccII CGCG 1 cut(s) 650
AciI CCGC 2 cut(s) 284, 738
AclI AACGTT 1 cut(s) 1466
AclWI GGATC 6 cut(s) 297, 401, 414, 1406, 1439, 1452
AcsI RAATTY 4 cut(s) 277, 511, 842, 1307
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 3 cut(s) 170, 1361, 1421
AjnI CCWGG 1 cut(s) 540
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 6 cut(s) 297, 401, 414, 1406, 1439, 1452
AoxI GGCC 2 cut(s) 776, 1352
ApeKI GCWGC 4 cut(s) 67, 455, 476, 758
ApoI RAATTY 4 cut(s) 277, 511, 842, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 1078, 1110
Asp700I GAANNNNTTC 2 cut(s) 277, 576
AspLEI GCGC 3 cut(s) 112, 652, 1370
AspS9I GGNCC 2 cut(s) 776, 1352
AsuHPI GGTGA 5 cut(s) 781, 781, 956, 1388, 1421
BaeGI GKGCMC 1 cut(s) 952
BamHI GGATCC 2 cut(s) 406, 1444
BanII GRGCYC 2 cut(s) 466, 1484
BarI GAAGNNNNNNTAC 2 cut(s) 557, 589
BbsI GAAGAC 1 cut(s) 875
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 4 cut(s) 79, 463, 467, 770
BccI CCATC 4 cut(s) 964, 1180, 1373, 1391
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 542
BciVI GTATCC 1 cut(s) 631
BclI TGATCA 1 cut(s) 1213
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 7 cut(s) 228, 261, 459, 473, 1224, 1314, 1460
BfoI RGCGCY 1 cut(s) 1371
BfuI GTATCC 1 cut(s) 631
BisI GCNGC 6 cut(s) 68, 285, 456, 477, 738, 759
BlsI GCNGC 6 cut(s) 69, 286, 457, 478, 739, 760
Bme1390I CCNGG 1 cut(s) 542
BmgT120I GGNCC 2 cut(s) 776, 1352
BmiI GGNNCC 2 cut(s) 408, 1446
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 2 cut(s) 201, 1225
BmsI GCATC 3 cut(s) 97, 442, 872
BmuI ACTGGG 2 cut(s) 201, 1225
BpiI GAAGAC 1 cut(s) 875
BpmI CTGGAG 1 cut(s) 916
BpuEI CTTGAG 1 cut(s) 1492
Bsa29I ATCGAT 1 cut(s) 996
BsaAI YACGTR 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 1401
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 45, 631
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 1361, 1421
Bse1I ACTGG 4 cut(s) 146, 196, 255, 1231
Bse8I GATNNNNATC 1 cut(s) 1401
BseBI CCWGG 1 cut(s) 542
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 2 cut(s) 45, 631
BseGI GGATG 2 cut(s) 457, 1482
BseJI GATNNNNATC 1 cut(s) 1401
BseLI CCNNNNNNNGG 3 cut(s) 170, 1361, 1421
BseMII CTCAG 2 cut(s) 1112, 1262
BseNI ACTGG 4 cut(s) 146, 196, 255, 1231
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 4 cut(s) 79, 463, 467, 770
BseYI CCCAGC 4 cut(s) 1131, 1200, 1268, 1426
Bsh1236I CGCG 1 cut(s) 650
BshFI GGCC 2 cut(s) 778, 1354
BshVI ATCGAT 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 466
BslFI GGGAC 1 cut(s) 1031
BslI CCNNNNNNNGG 3 cut(s) 170, 1361, 1421
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 1031
BsnI GGCC 2 cut(s) 778, 1354
Bso31I GGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 466, 952, 1484
Bsp143I GATC 6 cut(s) 302, 406, 973, 1213, 1411, 1444
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 284, 738
BspANI GGCC 2 cut(s) 778, 1354
BspCNI CTCAG 2 cut(s) 1111, 1261
BspDI ATCGAT 1 cut(s) 996
BspFNI CGCG 1 cut(s) 650
BspHI TCATGA 2 cut(s) 466, 1327
BspLI GGNNCC 2 cut(s) 408, 1446
BspPI GGATC 6 cut(s) 297, 401, 414, 1406, 1439, 1452
BspQI GCTCTTC 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 245
BsrI ACTGG 4 cut(s) 146, 196, 255, 1231
BssECI CCNNGG 2 cut(s) 45, 631
BssMI GATC 6 cut(s) 302, 406, 973, 1213, 1411, 1444
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 7 cut(s) 122, 133, 335, 619, 632, 991, 1055
Bst6I CTCTTC 3 cut(s) 408, 441, 723
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 735, 1453, 1457
BstDEI CTNAG 3 cut(s) 944, 1098, 1248
BstDSI CCRYGG 2 cut(s) 45, 631
BstEII GGTNACC 1 cut(s) 1055
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 457, 1482
BstFNI CGCG 1 cut(s) 650
BstH2I RGCGCY 1 cut(s) 1371
BstHHI GCGC 3 cut(s) 112, 652, 1370
BstKTI GATC 6 cut(s) 305, 409, 976, 1216, 1414, 1447
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 6 cut(s) 302, 406, 973, 1213, 1411, 1444
BstMWI GCNNNNNNNGC 2 cut(s) 461, 743
BstNI CCWGG 1 cut(s) 542
BstPI GGTNACC 1 cut(s) 1055
BstSCI CCNGG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 952
BstUI CGCG 1 cut(s) 650
BstV1I GCAGC 4 cut(s) 79, 463, 467, 770
BstV2I GAAGAC 1 cut(s) 875
BstX2I RGATCY 2 cut(s) 406, 1444
BstYI RGATCY 2 cut(s) 406, 1444
Bsu15I ATCGAT 1 cut(s) 996
BsuI GTATCC 1 cut(s) 631
BsuRI GGCC 2 cut(s) 778, 1354
BsuTUI ATCGAT 1 cut(s) 996
BtgI CCRYGG 2 cut(s) 45, 631
BtsCI GGATG 2 cut(s) 457, 1482
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 2 cut(s) 262, 931
Cac8I GCNNGC 3 cut(s) 735, 1453, 1457
CciI TCATGA 2 cut(s) 466, 1327
CfoI GCGC 3 cut(s) 112, 652, 1370
Cfr13I GGNCC 2 cut(s) 776, 1352
ClaI ATCGAT 1 cut(s) 996
Csp6I GTAC 1 cut(s) 364
CspCI CAANNNNNGTGG 6 cut(s) 141, 176, 412, 447, 613, 648
CviAII CATG 7 cut(s) 46, 116, 343, 467, 1328, 1373, 1391
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 3 cut(s) 944, 1098, 1248
DpnI GATC 6 cut(s) 304, 408, 975, 1215, 1413, 1446
DpnII GATC 6 cut(s) 302, 406, 973, 1213, 1411, 1444
Eam1104I CTCTTC 3 cut(s) 408, 441, 723
EarI CTCTTC 3 cut(s) 408, 441, 723
Ecl136II GAGCTC 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 466, 1484
Eco31I GGTCTC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 464
Eco91I GGTNACC 1 cut(s) 1055
EcoICRI GAGCTC 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 1055
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 466, 1484
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 7 cut(s) 49, 119, 346, 470, 1331, 1376, 1394
FaqI GGGAC 1 cut(s) 1031
FatI CATG 7 cut(s) 45, 115, 342, 466, 1327, 1372, 1390
FauNDI CATATG 1 cut(s) 748
FbaI TGATCA 1 cut(s) 1213
Fnu4HI GCNGC 6 cut(s) 68, 285, 456, 477, 738, 759
FokI GGATG 2 cut(s) 464, 1489
FriOI GRGCYC 2 cut(s) 466, 1484
Fsp4HI GCNGC 6 cut(s) 68, 285, 456, 477, 738, 759
FspBI CTAG 7 cut(s) 228, 261, 459, 473, 1224, 1314, 1460
GlaI GCGC 3 cut(s) 111, 651, 1369
GluI GCNGC 6 cut(s) 68, 285, 456, 477, 738, 759
GsaI CCCAGC 4 cut(s) 1135, 1204, 1272, 1430
GsuI CTGGAG 1 cut(s) 916
HaeII RGCGCY 1 cut(s) 1371
HaeIII GGCC 2 cut(s) 778, 1354
HhaI GCGC 3 cut(s) 112, 652, 1370
Hin1II CATG 7 cut(s) 49, 119, 346, 470, 1331, 1376, 1394
Hin6I GCGC 3 cut(s) 110, 650, 1368
HinP1I GCGC 3 cut(s) 110, 650, 1368
HphI GGTGA 5 cut(s) 781, 781, 956, 1388, 1421
Hpy188I TCNGA 6 cut(s) 40, 590, 1023, 1251, 1342, 1438
Hpy188III TCNNGA 8 cut(s) 410, 467, 830, 1163, 1241, 1328, 1471, 1493
HpyAV CCTTC 5 cut(s) 562, 587, 775, 1016, 1247
HpyCH4III ACNGT 7 cut(s) 122, 133, 335, 619, 632, 991, 1055
HpyCH4IV ACGT 4 cut(s) 531, 753, 872, 1466
HpyCH4V TGCA 6 cut(s) 67, 455, 758, 863, 1286, 1394
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 743
HpyF3I CTNAG 3 cut(s) 944, 1098, 1248
HpySE526I ACGT 4 cut(s) 531, 753, 872, 1466
Hsp92II CATG 7 cut(s) 49, 119, 346, 470, 1331, 1376, 1394
HspAI GCGC 3 cut(s) 110, 650, 1368
Ksp22I TGATCA 1 cut(s) 1213
Kzo9I GATC 6 cut(s) 302, 406, 973, 1213, 1411, 1444
LguI GCTCTTC 1 cut(s) 723
LmnI GCTCC 2 cut(s) 344, 1232
Lsp1109I GCAGC 4 cut(s) 79, 463, 467, 770
LweI GCATC 3 cut(s) 97, 442, 872
MaeI CTAG 7 cut(s) 228, 261, 459, 473, 1224, 1314, 1460
MaeII ACGT 4 cut(s) 531, 753, 872, 1466
MaeIII GTNAC 6 cut(s) 329, 355, 806, 926, 1055, 1187
MalI GATC 6 cut(s) 304, 408, 975, 1215, 1413, 1446
MboI GATC 6 cut(s) 302, 406, 973, 1213, 1411, 1444
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 2 cut(s) 406, 1444
MhlI GDGCHC 3 cut(s) 466, 952, 1484
MlyI GAGTC 4 cut(s) 50, 506, 913, 923
MmeI TCCRAC 1 cut(s) 691
MroXI GAANNNNTTC 2 cut(s) 277, 576
MseI TTAA 1 cut(s) 521
MslI CAYNNNNRTG 3 cut(s) 391, 1377, 1395
MspR9I CCNGG 1 cut(s) 542
MunI CAATTG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 542
MvnI CGCG 1 cut(s) 650
MwoI GCNNNNNNNGC 2 cut(s) 461, 743
NcoI CCATGG 1 cut(s) 45
NdeI CATATG 1 cut(s) 748
NdeII GATC 6 cut(s) 302, 406, 973, 1213, 1411, 1444
NlaIII CATG 7 cut(s) 49, 119, 346, 470, 1331, 1376, 1394
NlaIV GGNNCC 2 cut(s) 408, 1446
NmuCI GTSAC 1 cut(s) 926
PagI TCATGA 2 cut(s) 466, 1327
PciSI GCTCTTC 1 cut(s) 723
PdmI GAANNNNTTC 2 cut(s) 277, 576
PfeI GAWTC 6 cut(s) 826, 998, 1024, 1159, 1252, 1496
PkrI GCNGC 6 cut(s) 69, 286, 457, 478, 739, 760
PleI GAGTC 4 cut(s) 49, 505, 913, 923
PpsI GAGTC 4 cut(s) 49, 505, 913, 923
Ppu21I YACGTR 1 cut(s) 532
PsiI TTATAA 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 466
Psp1406I AACGTT 1 cut(s) 1466
Psp6I CCWGG 1 cut(s) 540
PspEI GGTNACC 1 cut(s) 1055
PspFI CCCAGC 4 cut(s) 1131, 1200, 1268, 1426
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 408, 1446
PspPI GGNCC 2 cut(s) 776, 1352
PsrI GAACNNNNNNTAC 2 cut(s) 706, 738
PsuI RGATCY 2 cut(s) 406, 1444
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 3 cut(s) 391, 1377, 1395
SacI GAGCTC 1 cut(s) 466
SapI GCTCTTC 1 cut(s) 723
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 6 cut(s) 68, 285, 456, 477, 738, 759
Sau3AI GATC 6 cut(s) 302, 406, 973, 1213, 1411, 1444
Sau96I GGNCC 2 cut(s) 776, 1352
SchI GAGTC 4 cut(s) 50, 506, 913, 923
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 3 cut(s) 466, 952, 1484
SfaNI GCATC 3 cut(s) 97, 442, 872
SmiMI CAYNNNNRTG 3 cut(s) 391, 1377, 1395
SmlI CTYRAG 1 cut(s) 1471
SmoI CTYRAG 1 cut(s) 1471
SsiI CCGC 2 cut(s) 284, 738
SspMI CTAG 7 cut(s) 228, 261, 459, 473, 1224, 1314, 1460
SstI GAGCTC 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 7 cut(s) 122, 133, 335, 619, 632, 991, 1055
TaiI ACGT 4 cut(s) 534, 756, 875, 1469
TaqI TCGA 5 cut(s) 5, 349, 641, 866, 996
TauI GCSGC 2 cut(s) 287, 740
TfiI GAWTC 6 cut(s) 826, 998, 1024, 1159, 1252, 1496
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 2 cut(s) 262, 931
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 4 cut(s) 67, 455, 476, 758
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 3 cut(s) 23, 566, 1316
TspGWI ACGGA 3 cut(s) 14, 419, 507
TspRI CASTG 2 cut(s) 262, 931
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 4 cut(s) 277, 511, 842, 1307
XmnI GAANNNNTTC 2 cut(s) 277, 576
XspI CTAG 7 cut(s) 228, 261, 459, 473, 1224, 1314, 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.