Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002546

Physical Location & Seq

Genomic Coordinates Reverse (-)

24824760 .. 24830508

Gene Structure 5749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGAATAGTGACGGCTCCAGATTTCTTTGTTCTGATATGAATTTGGATGACTTCAATTACAATACTTTTCCTTTTGACAACCATCCTTTGTCATCACCATTTCCTTTCGCAAGTGATGAGGGTTTTATATCTGGTGTAAACAGCAGCACCTTTGGAGAAAACCAAATTAGTGATCATTTCATGAACCAAGGGGAGAATGCTAGTGGAAGTGGCACAAAATCTGCGGAAATAAAGCGCAAACGTCGCCCTACTAAAAAGTGTAAACGAACATTATTTGGTGAGAAAAGTGATAATGTGCTCCACCAAGAGAAGAACCTTACTGGAAGTGGACTCAATTCTGTGAAAGTGCAACGTAAACGTCCGCCTACTAAAAAGGGCAAAAAAGCATCTGGTCATCAGAGAAGTTCTAGGTTTCGCGGAGTTACGAGGTACCCAGGACATTTTGAAGCATTTCTATGGGATAATTCTGATTCACAAGTGAAAGGCAAGACAGATACTCAAGAGGAAGCAGCAAGGGCTTATGATATTGCAGTAATAAAATGTAGAGGAGGGCGGGAAGCAGTGACCAATTTTGATCTAAGCCACTATGATGTCGAAGGTATTCTTGAGAGCCCAAATATTCCAATTGAAAATGGTGCTTCAAAGTTCATAAGGTGGACTGCAGCTGATCATATCATCCAGAGCAGAAGAACCACTCACAATGTTGCCGTTTCACAACTACAAGTTGATAGCTCGGGTAATAACCCTAATATAACCCCAATAGCCCCACCATTATTTGAGCCAAAAGTGCAATCCTTAGAAACCCATTGCAATTCAAACCCAGAACAACAATATCCATGCCCCTCCCTCAATCCCAACCAAAATAATGACCAGATCCAAATATTCCAATTCCCGCAGTACTTTAAAAACCCTAACTTTGAATTTGATCATCTTCCTTGCTACCAGAAACCTAATTTCCCAATAAACCCTAGTTTCGATAATTCGGGTAACCATAGTGAAAAGCAGATAGTGCCATCACTCCAGTTTCAACCTATTCTGACCCCAGAGAACCACGAGCTTCAGTTTCATCAGTATAACAGTGATAATTCCCAGGCCCATATGCCTCAAAACCCTAGCTCCTCCAGTCTTCAAGACTTTCAGAACCCTAATTGCCGTGAAAACCCTAATATTTTTAGTGAGTTGACTAACCTTCAAAGTGGTAGCGATATCAGGGAATTTCCCAGTGGTCAGGAACCAGTTGCGAGCTTCGCAATGATGGGGACGAACGAGAGTCACAGTGATTGCACCAATACAGTAGAGGAAAATAGAAATTTTGCTGAAGACTTTAGGATGGACAATCCAGACTTGGACATTTCATCTAGCAGCTGGTTCGAAATGTTAATGACCTTAAACAGTTCTGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010449 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0031323 GO:0031326 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098727 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

468

Amino Acids

52.8

Weight (kDa)

5.54

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23031
malus_domestica	MD17G1047700.v1.1
prunus_persica	Prupe.7G069100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0480851 RchiOBHm_Chr3g0480891
rosa_laevigata	RLG00000023444 RLG00000023445 RLG00000023447 RLG00000034573
rosa_multiflora	Rmu_sc0004058.1_g000024 Rmu_sc0004838.1_g000011 Rmu_sc0006028.1_g000028 Rmu_sc0012984.1_g000002 Rmu_sc0012984.1_g000013
rosa_roxburghii	Rroxscaffold_1G00032960 Rroxscaffold_6G00400920 Rroxscaffold_6G00400960
rosa_rugosa	Rorug03G0186900 Rorug03G0187000 Rorug03G0187000 Rorug03G0187200 Rorug03G0187300 Rorug05G0241400
rosa_samantha	Rh3AG238500 Rh3AG238600 Rh3BG272000 Rh3BG272500 Rh3BG272700 Rh3BG272800 Rh3CG267800 Rh3CG268300 Rh3DG264100 Rh3DG264400 Rh5AG321600 Rh5BG331900 Rh5CG357200 Rh5DG343700
rosa_wichuraiana	Rw0G006160 Rw3G021350 Rw3G021360 Rw5G030350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AccII	CGCG	1 cut(s)	417
AciI	CCGC	5 cut(s)	224, 362, 417, 553, 893
AclWI	GGATC	1 cut(s)	868
AcsI	RAATTY	4 cut(s)	40, 920, 1214, 1309
AcuI	CTGAAG	2 cut(s)	1043, 1338
AfaI	GTAC	2 cut(s)	431, 899
AgsI	TTSAA	9 cut(s)	55, 446, 629, 642, 816, 920, 1028, 1130, 1193
AjnI	CCWGG	2 cut(s)	433, 1089
AluBI	AGCT	6 cut(s)	665, 732, 1057, 1116, 1245, 1365
AluI	AGCT	6 cut(s)	665, 732, 1057, 1116, 1245, 1365
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	868
Ama87I	CYCGRG	1 cut(s)	733
AoxI	GGCC	1 cut(s)	1092
ApeKI	GCWGC	4 cut(s)	144, 509, 662, 1362
ApoI	RAATTY	4 cut(s)	40, 920, 1214, 1309
Asp700I	GAANNNNTTC	2 cut(s)	450, 600
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	1093
AsuHPI	GGTGA	2 cut(s)	87, 290
AsuII	TTCGAA	1 cut(s)	1371
AvaI	CYCGRG	1 cut(s)	733
BanI	GGYRCC	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	614
BauI	CACGAG	1 cut(s)	1052
BbsI	GAAGAC	2 cut(s)	1118, 1326
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	156, 521, 674, 1374
BccI	CCATC	4 cut(s)	90, 1021, 1249, 1324
BceAI	ACGGC	3 cut(s)	28, 692, 1137
BcgI	CGANNNNNNTGC	2 cut(s)	1351, 1385
BciT130I	CCWGG	2 cut(s)	435, 1091
BclI	TGATCA	3 cut(s)	172, 667, 925
BfaI	CTAG	5 cut(s)	201, 408, 969, 1113, 1359
BfmI	CTRYAG	1 cut(s)	660
BisI	GCNGC	4 cut(s)	145, 510, 663, 1363
BlsI	GCNGC	4 cut(s)	146, 511, 664, 1364
BmcAI	AGTACT	1 cut(s)	899
Bme1390I	CCNGG	2 cut(s)	435, 1091
BmeT110I	CYCGRG	1 cut(s)	733
BmgT120I	GGNCC	1 cut(s)	1093
BmiI	GGNNCC	3 cut(s)	16, 431, 1233
BmrFI	CCNGG	2 cut(s)	435, 1091
BmrI	ACTGGG	1 cut(s)	1215
BmsI	GCATC	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	1215
BpiI	GAAGAC	2 cut(s)	1118, 1326
BpmI	CTGGAG	2 cut(s)	1004, 1105
Bpu14I	TTCGAA	1 cut(s)	1371
BpuEI	CTTGAG	2 cut(s)	483, 626
BsaJI	CCNNGG	3 cut(s)	187, 433, 1089
BsaXI	ACNNNNNCTCC	2 cut(s)	1100, 1130
Bse1I	ACTGG	5 cut(s)	325, 1021, 1122, 1221, 1235
Bse3DI	GCAATG	2 cut(s)	805, 1257
BseBI	CCWGG	2 cut(s)	435, 1091
BseDI	CCNNGG	3 cut(s)	187, 433, 1089
BseGI	GGATG	4 cut(s)	52, 82, 675, 1335
BseMI	GCAATG	2 cut(s)	805, 1257
BseNI	ACTGG	5 cut(s)	325, 1021, 1122, 1221, 1235
BseRI	GAGGAG	2 cut(s)	561, 1108
BseXI	GCAGC	4 cut(s)	156, 521, 674, 1374
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	1 cut(s)	1094
BshNI	GGYRCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	733
BslFI	GGGAC	1 cut(s)	1273
BsmFI	GGGAC	1 cut(s)	1273
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	1094
BsoBI	CYCGRG	1 cut(s)	733
Bsp119I	TTCGAA	1 cut(s)	1371
Bsp1286I	GDGCHC	2 cut(s)	300, 614
Bsp143I	GATC	5 cut(s)	172, 574, 667, 873, 925
BspACI	CCGC	5 cut(s)	224, 362, 417, 553, 893
BspANI	GGCC	1 cut(s)	1094
BspFNI	CGCG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	16, 431, 1233
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	1 cut(s)	868
BspT104I	TTCGAA	1 cut(s)	1371
BspT107I	GGYRCC	1 cut(s)	429
BsrDI	GCAATG	2 cut(s)	805, 1257
BsrI	ACTGG	5 cut(s)	325, 1021, 1122, 1221, 1235
BssECI	CCNNGG	3 cut(s)	187, 433, 1089
BssMI	GATC	5 cut(s)	172, 574, 667, 873, 925
BssSI	CACGAG	1 cut(s)	1052
BssT1I	CCWWGG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	1052
Bst2UI	CCWGG	2 cut(s)	435, 1091
Bst4CI	ACNGT	4 cut(s)	1079, 1277, 1294, 1394
BstAPI	GCANNNNNTGC	1 cut(s)	1009
BstBI	TTCGAA	1 cut(s)	1371
BstC8I	GCNNGC	1 cut(s)	1243
BstDEI	CTNAG	2 cut(s)	578, 796
BstEII	GGTNACC	1 cut(s)	986
BstF5I	GGATG	4 cut(s)	52, 82, 675, 1335
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	5 cut(s)	175, 577, 670, 876, 928
BstMBI	GATC	5 cut(s)	172, 574, 667, 873, 925
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 515, 787, 1009, 1247
BstNI	CCWGG	2 cut(s)	435, 1091
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	2 cut(s)	433, 1089
BstSFI	CTRYAG	1 cut(s)	660
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	4 cut(s)	156, 521, 674, 1374
BstV2I	GAAGAC	2 cut(s)	1118, 1326
BstX2I	RGATCY	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	873
BsuRI	GGCC	1 cut(s)	1094
BtsCI	GGATG	4 cut(s)	52, 82, 675, 1335
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	4 cut(s)	567, 1084, 1228, 1282
Cac8I	GCNNGC	1 cut(s)	1243
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	1093
Csp6I	GTAC	2 cut(s)	430, 898
CviAII	CATG	2 cut(s)	181, 837
CviQI	GTAC	2 cut(s)	430, 898
DdeI	CTNAG	2 cut(s)	578, 796
DpnI	GATC	5 cut(s)	174, 576, 669, 875, 927
DpnII	GATC	5 cut(s)	172, 574, 667, 873, 925
DraI	TTTAAA	1 cut(s)	904
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	614
Eco32I	GATATC	1 cut(s)	1207
Eco57I	CTGAAG	2 cut(s)	1043, 1338
Eco88I	CYCGRG	1 cut(s)	733
Eco91I	GGTNACC	1 cut(s)	986
EcoO65I	GGTNACC	1 cut(s)	986
EcoRII	CCWGG	2 cut(s)	433, 1089
EcoRV	GATATC	1 cut(s)	1207
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	184, 840
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	1 cut(s)	1273
FatI	CATG	2 cut(s)	180, 836
FauI	CCCGC	2 cut(s)	546, 900
FauNDI	CATATG	1 cut(s)	1098
FbaI	TGATCA	3 cut(s)	172, 667, 925
Fnu4HI	GCNGC	4 cut(s)	145, 510, 663, 1363
FokI	GGATG	4 cut(s)	59, 69, 662, 1342
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	4 cut(s)	145, 510, 663, 1363
FspBI	CTAG	5 cut(s)	201, 408, 969, 1113, 1359
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	145, 510, 663, 1363
GsuI	CTGGAG	2 cut(s)	1004, 1105
HaeIII	GGCC	1 cut(s)	1094
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	184, 840
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	1182
HindII	GTYRAC	1 cut(s)	1182
HinfI	GANTC	3 cut(s)	330, 470, 1270
HphI	GGTGA	2 cut(s)	87, 290
Hpy166II	GTNNAC	6 cut(s)	139, 263, 329, 356, 657, 1182
Hpy188I	TCNGA	7 cut(s)	34, 399, 469, 1038, 1140, 1399, 1406
Hpy188III	TCNNGA	8 cut(s)	18, 181, 500, 605, 679, 1130, 1229, 1340
Hpy8I	GTNNAC	6 cut(s)	139, 263, 329, 356, 657, 1182
Hpy99I	CGWCG	1 cut(s)	246
HpyAV	CCTTC	2 cut(s)	590, 1199
HpyCH4III	ACNGT	4 cut(s)	1079, 1277, 1294, 1394
HpyCH4IV	ACGT	3 cut(s)	241, 352, 358
HpyCH4V	TGCA	6 cut(s)	349, 530, 662, 790, 810, 1284
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 515, 787, 1009, 1247
HpyF3I	CTNAG	2 cut(s)	578, 796
HpySE526I	ACGT	3 cut(s)	241, 352, 358
Hsp92II	CATG	2 cut(s)	184, 840
HspAI	GCGC	1 cut(s)	235
KpnI	GGTACC	1 cut(s)	433
Ksp22I	TGATCA	3 cut(s)	172, 667, 925
Kzo9I	GATC	5 cut(s)	172, 574, 667, 873, 925
LmnI	GCTCC	3 cut(s)	20, 303, 1121
Lsp1109I	GCAGC	4 cut(s)	156, 521, 674, 1374
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	5 cut(s)	201, 408, 969, 1113, 1359
MaeII	ACGT	3 cut(s)	241, 352, 358
MaeIII	GTNAC	5 cut(s)	8, 421, 562, 986, 1271
MalI	GATC	5 cut(s)	174, 576, 669, 875, 927
MboI	GATC	5 cut(s)	172, 574, 667, 873, 925
MboII	GAAGA	5 cut(s)	322, 699, 923, 1118, 1331
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	1 cut(s)	873
MhlI	GDGCHC	2 cut(s)	300, 614
MlyI	GAGTC	2 cut(s)	324, 1279
MroXI	GAANNNNTTC	2 cut(s)	450, 600
MseI	TTAA	3 cut(s)	903, 1379, 1388
MslI	CAYNNNNRTG	2 cut(s)	454, 588
MspA1I	CMGCKG	2 cut(s)	665, 1365
MspR9I	CCNGG	2 cut(s)	435, 1091
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	435, 1091
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	243, 515, 787, 1009, 1247
NdeI	CATATG	1 cut(s)	1098
NdeII	GATC	5 cut(s)	172, 574, 667, 873, 925
NlaIII	CATG	2 cut(s)	184, 840
NlaIV	GGNNCC	3 cut(s)	16, 431, 1233
NmuCI	GTSAC	3 cut(s)	8, 562, 1271
NspV	TTCGAA	1 cut(s)	1371
PagI	TCATGA	1 cut(s)	180
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	2 cut(s)	450, 600
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	146, 511, 664, 1364
PleI	GAGTC	2 cut(s)	324, 1278
PpsI	GAGTC	2 cut(s)	324, 1278
Psp6I	CCWGG	2 cut(s)	433, 1089
PspEI	GGTNACC	1 cut(s)	986
PspGI	CCWGG	2 cut(s)	433, 1089
PspN4I	GGNNCC	3 cut(s)	16, 431, 1233
PspPI	GGNCC	1 cut(s)	1093
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	1 cut(s)	873
PvuII	CAGCTG	2 cut(s)	665, 1365
RsaI	GTAC	2 cut(s)	431, 899
RsaNI	GTAC	2 cut(s)	430, 898
RseI	CAYNNNNRTG	2 cut(s)	454, 588
SaqAI	TTAA	3 cut(s)	903, 1379, 1388
SatI	GCNGC	4 cut(s)	145, 510, 663, 1363
Sau3AI	GATC	5 cut(s)	172, 574, 667, 873, 925
Sau96I	GGNCC	1 cut(s)	1093
ScaI	AGTACT	1 cut(s)	899
SchI	GAGTC	2 cut(s)	324, 1279
ScrFI	CCNGG	2 cut(s)	435, 1091
SduI	GDGCHC	2 cut(s)	300, 614
SfaNI	GCATC	1 cut(s)	395
SfcI	CTRYAG	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	1371
SmiMI	CAYNNNNRTG	2 cut(s)	454, 588
SmlI	CTYRAG	2 cut(s)	498, 605
SmoI	CTYRAG	2 cut(s)	498, 605
SsiI	CCGC	5 cut(s)	224, 362, 417, 553, 893
SspI	AATATT	3 cut(s)	619, 882, 1168
SspMI	CTAG	5 cut(s)	201, 408, 969, 1113, 1359
StyD4I	CCNGG	2 cut(s)	433, 1089
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	4 cut(s)	1079, 1277, 1294, 1394
TaiI	ACGT	3 cut(s)	244, 355, 361
TaqI	TCGA	3 cut(s)	594, 975, 1371
TatI	WGTACW	1 cut(s)	897
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	3 cut(s)	903, 1379, 1388
Tru9I	TTAA	3 cut(s)	903, 1379, 1388
TscAI	CASTG	4 cut(s)	567, 1084, 1228, 1282
TseFI	GTSAC	3 cut(s)	8, 562, 1271
TseI	GCWGC	4 cut(s)	144, 509, 662, 1362
Tsp45I	GTSAC	3 cut(s)	8, 562, 1271
TspDTI	ATGAA	7 cut(s)	17, 53, 169, 197, 637, 1055, 1344
TspRI	CASTG	4 cut(s)	567, 1084, 1228, 1282
XapI	RAATTY	4 cut(s)	40, 920, 1214, 1309
XmnI	GAANNNNTTC	2 cut(s)	450, 600
XspI	CTAG	5 cut(s)	201, 408, 969, 1113, 1359
ZrmI	AGTACT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.