Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002177

Physical Location & Seq

Genomic Coordinates Forward (+)

28080438 .. 28082532

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATCAGCGGAAAAGACGTCTACAATGTCCTTGCGAGCATTGTGCCTCTTTACGTAGCCATGATCTTGGCCTACGGCTCGGTTCGGTGGTGGAACATCTTAACCCCGGACCAGTGCTCCGGCATCAACCGTTTCGTGGTGGTTTTTGCCGTTCCTTTAATGCCAGGGAATCATCAGTTGATAAATAATACGAGTTCTGGAAGGAAAATGAGTGGAGATGAGGTGCTTGAAATAGAAGAAGGAAAAATGTTACCGGCAAGTGCACCTCCATATAGTAGCGGCCAGAAGAAGATGGACATGGAAGAAGCAGGTTTATTCATGGCTTTACAACCAAAGATTATAGCTGGTGGAAAATCACTAGCAACATTTGCAATTGTTGTTAGGTTCTTGATAGGCCCAGCAGTGGTTGCTGCATGCTCCATAGCTGTTGGTCTTCGTGGAGCTGCTCTTCCTCTAGCGATTGTTCCTTTTGTATTTGCCAAAGAATACAATGTGCACGCAGAAATAATTAGCACTTCAGTCATTTTTGGAATGCTGGTTGCCTTGCCTGTAACGATAGTGTACTATATTCTTCTCGGACTAGTTTCTGGCAAATTGAGGGCTTTTGGAAGATATATAAACTGTACAGTTCGGACACCCAAGTCACTCTGGGCACCCTCACTGCTTTGGGCACCAAAAGGCTCTATCCATAGCTGCTTGCATTGGCTGCCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009914 GO:0009921 GO:0009925 GO:0009926 GO:0009965 GO:0009966 GO:0009987 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010229 GO:0010252 GO:0010315 GO:0010329 GO:0010338 GO:0010358 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016021 GO:0016323 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0023052 GO:0030054 GO:0030312 GO:0031224 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045177 GO:0045178 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048532 GO:0048583 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048830 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0055085 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080161 GO:0090567 GO:0090698 GO:0098590 GO:0098796 GO:0098797 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

239

Amino Acids

25.7

Weight (kDa)

9.32

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 54	2.2e-13	Membrane transport protein
Mem_trans	PF03547	103 - 189	1.1e-16	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23080 AT1G23080 AT1G23080 AT1G23080 AT1G70940 AT2G01420 AT2G01420 AT2G01420
fragaria_vesca	FvH4_4g32450 FvH4_4g32450 FvH4_4g32450 FvH4_6g35590
malus_domestica	MD13G1025300.v1.1 MD16G1027900.v1.1
prunus_persica	Prupe.1G324900_v2.0.a1 Prupe.1G324900_v2.0.a1
pyrus_communis	pycom13g02370 pycom13g02380 pycom16g02380
rosa_chinensis	RchiOBHm_Chr4g0441311 RchiOBHm_Chr6g0249491
rosa_laevigata	RLG00000006103 RLG00000014076 RLG00000023177
rosa_multiflora	Rmu_co8277815.1_g000001 Rmu_co8310335.1_g000001 Rmu_sc0001891.1_g000054 Rmu_sc0003778.1_g000028 Rmu_sc0010320.1_g000001 Rmu_sc0012909.1_g000005 Rmu_sc0015560.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382190
rosa_rugosa	Rorug01G0483300 Rorug04G0332300
rosa_samantha	Rh3BG354500 Rh4AG384200 Rh4BG088700 Rh4BG167500 Rh4BG398300 Rh4CG413400 Rh4DG390900 Rh6AG118800
rosa_wichuraiana	Rw4G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	640
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	652, 670
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	2 cut(s)	9, 279
AcoI	YGGCCR	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	2 cut(s)	563, 625
AfiI	CCNNNNNNNGG	2 cut(s)	136, 403
AgsI	TTSAA	1 cut(s)	230
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	4 cut(s)	344, 425, 443, 693
AluI	AGCT	4 cut(s)	344, 425, 443, 693
Alw21I	GWGCWC	3 cut(s)	119, 265, 498
Alw44I	GTGCAC	2 cut(s)	261, 494
AoxI	GGCC	3 cut(s)	69, 280, 394
ApaLI	GTGCAC	2 cut(s)	261, 494
ApeKI	GCWGC	4 cut(s)	410, 443, 693, 706
AspS9I	GGNCC	2 cut(s)	109, 395
AsuC2I	CCSGG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	4 cut(s)	265, 498, 655, 673
BanI	GGYRCC	2 cut(s)	652, 670
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	3 cut(s)	119, 265, 498
BbvI	GCAGC	4 cut(s)	397, 430, 680, 693
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	2 cut(s)	91, 134
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	107
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	4 cut(s)	359, 455, 581, 715
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	5 cut(s)	280, 411, 444, 694, 707
BlsI	GCNGC	5 cut(s)	281, 412, 445, 695, 708
Bme1390I	CCNGG	2 cut(s)	107, 165
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	109, 395
BmiI	GGNNCC	2 cut(s)	654, 672
BmrFI	CCNGG	2 cut(s)	107, 165
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	105, 164
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 403
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	105, 164
BseLI	CCNNNNNNNGG	2 cut(s)	136, 403
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	4 cut(s)	265, 498, 655, 673
BseXI	GCAGC	4 cut(s)	397, 430, 680, 693
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	3 cut(s)	71, 282, 396
BshNI	GGYRCC	2 cut(s)	652, 670
BsiHKAI	GWGCWC	3 cut(s)	119, 265, 498
BsiSI	CCGG	3 cut(s)	107, 120, 254
BslI	CCNNNNNNNGG	2 cut(s)	136, 403
BsmI	GAATGC	1 cut(s)	537
BsnI	GGCC	3 cut(s)	71, 282, 396
Bsp1286I	GDGCHC	5 cut(s)	119, 265, 498, 655, 673
Bsp1407I	TGTACA	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	3, 63
BspACI	CCGC	2 cut(s)	9, 279
BspANI	GGCC	3 cut(s)	71, 282, 396
BspLI	GGNNCC	2 cut(s)	654, 672
BspMI	ACCTGC	1 cut(s)	299
BspQI	GCTCTTC	1 cut(s)	453
BspT107I	GGYRCC	2 cut(s)	652, 670
BsrFI	RCCGGY	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	105, 164
BssMI	GATC	2 cut(s)	3, 63
BssNI	GRCGYC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	131, 623, 628
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	18
BstAPI	GCANNNNNTGC	3 cut(s)	368, 407, 706
BstAUI	TGTACA	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	4 cut(s)	37, 415, 498, 698
BstKTI	GATC	2 cut(s)	6, 66
BstMBI	GATC	2 cut(s)	3, 63
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 407, 706
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	417
BstSCI	CCNGG	2 cut(s)	105, 163
BstSLI	GKGCMC	4 cut(s)	265, 498, 655, 673
BstSNI	TACGTA	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	397, 430, 680, 693
BstV2I	GAAGAC	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	67
BsuRI	GGCC	3 cut(s)	71, 282, 396
BtsI	GCAGTG	2 cut(s)	408, 659
BtsIMutI	CAGTG	3 cut(s)	119, 408, 659
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	4 cut(s)	37, 415, 498, 698
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	109, 395
Csp6I	GTAC	2 cut(s)	562, 624
CviAII	CATG	4 cut(s)	61, 298, 319, 414
CviQI	GTAC	2 cut(s)	562, 624
DpnI	GATC	2 cut(s)	5, 65
DpnII	GATC	2 cut(s)	3, 63
DrdI	GACNNNNNNGTC	1 cut(s)	640
DseDI	GACNNNNNNGTC	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco105I	TACGTA	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	163
FaeI	CATG	4 cut(s)	64, 301, 322, 417
FatI	CATG	4 cut(s)	60, 297, 318, 413
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	5 cut(s)	280, 411, 444, 694, 707
Fsp4HI	GCNGC	5 cut(s)	280, 411, 444, 694, 707
FspBI	CTAG	4 cut(s)	359, 455, 581, 715
GluI	GCNGC	5 cut(s)	280, 411, 444, 694, 707
GsaI	CCCAGC	1 cut(s)	401
HaeIII	GGCC	3 cut(s)	71, 282, 396
HapII	CCGG	3 cut(s)	107, 120, 254
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	64, 301, 322, 417
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	3 cut(s)	107, 120, 254
Hpy166II	GTNNAC	4 cut(s)	22, 263, 496, 562
Hpy188I	TCNGA	2 cut(s)	578, 633
Hpy188III	TCNNGA	2 cut(s)	198, 388
Hpy8I	GTNNAC	4 cut(s)	22, 263, 496, 562
HpyAV	CCTTC	2 cut(s)	195, 233
HpyCH4III	ACNGT	3 cut(s)	131, 623, 628
HpyCH4IV	ACGT	2 cut(s)	18, 54
HpyCH4V	TGCA	5 cut(s)	263, 371, 413, 496, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 407, 706
HpySE526I	ACGT	2 cut(s)	18, 54
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	64, 301, 322, 417
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 63
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	3 cut(s)	122, 422, 440
Lsp1109I	GCAGC	4 cut(s)	397, 430, 680, 693
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	4 cut(s)	359, 455, 581, 715
MaeII	ACGT	2 cut(s)	18, 54
MaeIII	GTNAC	3 cut(s)	249, 550, 642
MalI	GATC	2 cut(s)	5, 65
MboI	GATC	2 cut(s)	3, 63
MboII	GAAGA	8 cut(s)	248, 298, 301, 314, 425, 440, 563, 621
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	5 cut(s)	119, 265, 498, 655, 673
MluCI	AATT	3 cut(s)	372, 507, 593
MnlI	CCTC	6 cut(s)	57, 214, 276, 462, 591, 667
MseI	TTAA	2 cut(s)	101, 158
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	3 cut(s)	107, 120, 254
MspR9I	CCNGG	2 cut(s)	107, 165
MunI	CAATTG	1 cut(s)	372
Mva1269I	GAATGC	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	368, 407, 706
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	3, 63
NlaIII	CATG	4 cut(s)	64, 301, 322, 417
NlaIV	GGNNCC	2 cut(s)	654, 672
NmuCI	GTSAC	1 cut(s)	642
NspI	RCATGY	1 cut(s)	417
PaeI	GCATGC	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	453
PctI	GAATGC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	5 cut(s)	281, 412, 445, 695, 708
Ppu21I	YACGTR	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	654, 672
PspPI	GGNCC	2 cut(s)	109, 395
RsaI	GTAC	2 cut(s)	563, 625
RsaNI	GTAC	2 cut(s)	562, 624
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	101, 158
SatI	GCNGC	5 cut(s)	280, 411, 444, 694, 707
Sau3AI	GATC	2 cut(s)	3, 63
Sau96I	GGNCC	2 cut(s)	109, 395
ScrFI	CCNGG	2 cut(s)	107, 165
SduI	GDGCHC	5 cut(s)	119, 265, 498, 655, 673
SfaNI	GCATC	1 cut(s)	132
SinI	GGWCC	1 cut(s)	109
SnaBI	TACGTA	1 cut(s)	55
SpeI	ACTAGT	1 cut(s)	580
SphI	GCATGC	1 cut(s)	417
Sse9I	AATT	3 cut(s)	372, 507, 593
SsiI	CCGC	2 cut(s)	9, 279
SspMI	CTAG	4 cut(s)	359, 455, 581, 715
StyD4I	CCNGG	2 cut(s)	105, 163
TaaI	ACNGT	3 cut(s)	131, 623, 628
TaiI	ACGT	2 cut(s)	21, 57
TasI	AATT	3 cut(s)	372, 507, 593
TatI	WGTACW	2 cut(s)	561, 623
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	101, 158
Tru9I	TTAA	2 cut(s)	101, 158
TscAI	CASTG	3 cut(s)	119, 408, 666
TseFI	GTSAC	1 cut(s)	642
TseI	GCWGC	4 cut(s)	410, 443, 693, 706
Tsp45I	GTSAC	1 cut(s)	642
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	3 cut(s)	119, 408, 666
VneI	GTGCAC	2 cut(s)	261, 494
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	417
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	4 cut(s)	359, 455, 581, 715
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.