Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015560.1

Orthogroup ID

OG0002177

Physical Location & Seq

Genomic Coordinates Forward (+)

29076 .. 31959

Gene Structure 2884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015560.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgctgcaggggcagcaggcgacacaagggtacgcaagggatgcaggagcagtgcacgaagatcatcatgctcttcgccctggccctctggaccaacttcacccgaaatggaagcctcaagtggatgatcacgaatttctcactctccacgcttcccaatactctggtcatgggaatcctgttgctgatcgccatgtacgaacaccgaatcccagagtccggtgcatcatttggtacaccctgttactcttcctcttcgagtaccgcggcgccaagctgctgataatggagcagttcatggagactgccacctccatcgtctccttcaaggtcgactccgaagtcatgtccctcgacggccgcaacttcctcgaaaccgacgtcaagatcggcaatgacggcaagctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

136

Amino Acids

15.48

Weight (kDa)

6.21

Isoelectric Point (pI)

13.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23080 AT1G23080 AT1G23080 AT1G23080 AT1G70940 AT2G01420 AT2G01420 AT2G01420
fragaria_vesca	FvH4_4g32450 FvH4_4g32450 FvH4_4g32450 FvH4_6g35590
malus_domestica	MD13G1025300.v1.1 MD16G1027900.v1.1
prunus_persica	Prupe.1G324900_v2.0.a1 Prupe.1G324900_v2.0.a1
pyrus_communis	pycom13g02370 pycom13g02380 pycom16g02380
rosa_chinensis	RchiOBHm_Chr4g0441311 RchiOBHm_Chr6g0249491
rosa_laevigata	RLG00000006103 RLG00000014076 RLG00000023177
rosa_multiflora	Rmu_co8277815.1_g000001 Rmu_co8310335.1_g000001 Rmu_sc0001891.1_g000054 Rmu_sc0003778.1_g000028 Rmu_sc0010320.1_g000001 Rmu_sc0012909.1_g000005 Rmu_sc0015560.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382190
rosa_rugosa	Rorug01G0483300 Rorug04G0332300
rosa_samantha	Rh3BG354500 Rh4AG384200 Rh4BG088700 Rh4BG167500 Rh4BG398300 Rh4CG413400 Rh4DG390900 Rh6AG118800
rosa_wichuraiana	Rw4G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AatII	GACGTC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	265, 267, 361
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	134
AcyI	GRCGYC	2 cut(s)	270, 381
AfaI	GTAC	4 cut(s)	32, 198, 236, 263
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	193, 225
AluBI	AGCT	2 cut(s)	277, 406
AluI	AGCT	2 cut(s)	277, 406
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	296, 325
Alw44I	GTGCAC	1 cut(s)	53
AoxI	GGCC	2 cut(s)	82, 358
ApaLI	GTGCAC	1 cut(s)	53
ApeKI	GCWGC	3 cut(s)	4, 13, 277
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	83, 91
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	25, 264
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	296, 325
BfmI	CTRYAG	1 cut(s)	5
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	5 cut(s)	5, 14, 268, 278, 361
BlsI	GCNGC	5 cut(s)	6, 15, 269, 279, 362
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	83, 91
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	31, 234
BpuEI	CTTGAG	1 cut(s)	102
BsaHI	GRCGYC	2 cut(s)	270, 381
BsaJI	CCNNGG	2 cut(s)	79, 265
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	79, 265
BseGI	GGATG	2 cut(s)	46, 130
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	57
BseX3I	CGGCCG	1 cut(s)	358
BseXI	GCAGC	2 cut(s)	25, 264
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	84, 360
BshNI	GGYRCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	296, 325
BsmBI	CGTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	84, 360
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	4 cut(s)	61, 127, 187, 387
BspACI	CCGC	3 cut(s)	265, 267, 361
BspANI	GGCC	2 cut(s)	84, 360
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	271
BspMAI	CTGCAG	1 cut(s)	9
BspQI	GCTCTTC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	79, 265
BssMI	GATC	4 cut(s)	61, 127, 187, 387
BssNI	GRCGYC	2 cut(s)	270, 381
Bst2UI	CCWGG	1 cut(s)	81
Bst6I	CTCTTC	3 cut(s)	78, 254, 260
BstACI	GRCGYC	2 cut(s)	270, 381
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	18, 404
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	2 cut(s)	46, 130
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	4 cut(s)	64, 130, 190, 390
BstMAI	GTCTC	2 cut(s)	296, 325
BstMBI	GATC	4 cut(s)	61, 127, 187, 387
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 13, 41, 399
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	25, 264
BstXI	CCANNNNNNTGG	1 cut(s)	164
BstZI	CGGCCG	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	84, 360
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	46, 130
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	18, 404
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	83, 91
Cfr42I	CCGCGG	1 cut(s)	268
Csp6I	GTAC	4 cut(s)	31, 197, 235, 262
CviAII	CATG	5 cut(s)	68, 170, 194, 298, 346
CviJI	RGCY	5 cut(s)	84, 115, 277, 360, 406
CviKI_1	RGCY	5 cut(s)	84, 115, 277, 360, 406
CviQI	GTAC	4 cut(s)	31, 197, 235, 262
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	4 cut(s)	63, 129, 189, 389
DpnII	GATC	4 cut(s)	61, 127, 187, 387
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	358
EagI	CGGCCG	1 cut(s)	358
Eam1104I	CTCTTC	3 cut(s)	78, 254, 260
EarI	CTCTTC	3 cut(s)	78, 254, 260
EclXI	CGGCCG	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	79
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	5 cut(s)	71, 173, 197, 301, 349
FaiI	YATR	5 cut(s)	69, 171, 195, 299, 347
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	5 cut(s)	67, 169, 193, 297, 345
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	5 cut(s)	5, 14, 268, 278, 361
FokI	GGATG	2 cut(s)	53, 137
Fsp4HI	GCNGC	5 cut(s)	5, 14, 268, 278, 361
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	5 cut(s)	5, 14, 268, 278, 361
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	84, 360
HapII	CCGG	1 cut(s)	220
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	2 cut(s)	270, 381
Hin1II	CATG	5 cut(s)	71, 173, 197, 301, 349
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	175, 208, 216, 335
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	3 cut(s)	55, 237, 334
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	3 cut(s)	89, 131, 385
Hpy8I	GTNNAC	3 cut(s)	55, 237, 334
Hpy99I	CGWCG	2 cut(s)	359, 383
HpyAV	CCTTC	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	7, 44, 55, 225
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 13, 41, 399
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	2 cut(s)	270, 381
Hsp92II	CATG	5 cut(s)	71, 173, 197, 301, 349
HspAI	GCGC	1 cut(s)	270
KasI	GGCGCC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	127
KspI	CCGCGG	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	61, 127, 187, 387
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	47, 289
Lsp1109I	GCAGC	2 cut(s)	25, 264
LweI	GCATC	2 cut(s)	31, 234
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	4 cut(s)	63, 129, 189, 389
MboI	GATC	4 cut(s)	61, 127, 187, 387
MboII	GAAGA	4 cut(s)	65, 71, 241, 247
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	1 cut(s)	134
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	2 cut(s)	225, 329
MnlI	CCTC	6 cut(s)	96, 126, 263, 322, 362, 380
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	10, 13, 41, 399
NarI	GGCGCC	1 cut(s)	270
NdeII	GATC	4 cut(s)	61, 127, 187, 387
NlaIII	CATG	5 cut(s)	71, 173, 197, 301, 349
NlaIV	GGNNCC	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	2 cut(s)	196, 378
PfeI	GAWTC	2 cut(s)	175, 208
PkrI	GCNGC	5 cut(s)	6, 15, 269, 279, 362
PleI	GAGTC	2 cut(s)	224, 329
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	224, 329
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	2 cut(s)	83, 91
PstI	CTGCAG	1 cut(s)	9
RsaI	GTAC	4 cut(s)	32, 198, 236, 263
RsaNI	GTAC	4 cut(s)	31, 197, 235, 262
SacII	CCGCGG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	78
SatI	GCNGC	5 cut(s)	5, 14, 268, 278, 361
Sau3AI	GATC	4 cut(s)	61, 127, 187, 387
Sau96I	GGNCC	2 cut(s)	83, 91
SchI	GAGTC	2 cut(s)	225, 329
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	5 cut(s)	279, 314, 333, 384, 408
SfaNI	GCATC	2 cut(s)	31, 234
SfcI	CTRYAG	1 cut(s)	5
SfoI	GGCGCC	1 cut(s)	271
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	3 cut(s)	265, 267, 361
SspDI	GGCGCC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	258, 333, 354, 372
TasI	AATT	1 cut(s)	134
TauI	GCSGC	2 cut(s)	270, 363
TfiI	GAWTC	2 cut(s)	175, 208
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	3 cut(s)	4, 13, 277
TspDTI	ATGAA	1 cut(s)	286
TspRI	CASTG	1 cut(s)	57
VneI	GTGCAC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	333
ZraI	GACGTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.