RchiOBHm_Chr6g0249491

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002177
Physical Location & Seq
Forward (+)
5484590 .. 5485030
441 bp
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UTR
Exon/CDS
Intron
PRQ22367

Sequence Viewer

Length: 441 bp
ATGATCTTAGCCTACGGCTCCGTCCGGTGGTGGAAGATCTTCTCCCCGGACCAATGCTCTAAAATCAACCGCTTCGTCACAATCTTCGCAGTTCCTCTTCTCTCCTTCCACTTCATCTCCACCAACAAGCCTTACACCATGAACTTCCGCTTCATCACCGCTGACACTCTCCAGAAGATCATCATGCTCTTCGCCCTGGCCCTCTGGACCAACTTCACCCGAAATGGAAGCCTCGAGTGGATGATCACGAATTTCTCACTCTCCACGCTTCCCAATACTCTGGTCATGGGAATCCCGTTGCTGATCGCAATGTACGGCCACCGAATCCCAGAGTCCGGCAGCCTGATGGTCCAGGTCGTCGTGCTCCAGTGCATCATTTGGTACACCCTGTTACTCTTCCTCTTCGAGTACTACGACGCCAAGCTGCTGATAATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

146

Amino Acids

17.03

Weight (kDa)

9.0

Isoelectric Point (pI)

16.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 1 - 146 6.8e-44 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 70, 148, 159
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 3 cut(s) 314, 383, 410
AfiI CCNNNNNNNGG 2 cut(s) 27, 335
AjnI CCWGG 2 cut(s) 195, 351
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw21I GWGCWC 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 198, 316
ApeKI GCWGC 2 cut(s) 339, 424
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 49, 199, 207, 349
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 148, 208
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 3 cut(s) 49, 207, 349
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 351, 411
BccI CCATC 1 cut(s) 340
BceAI ACGGC 2 cut(s) 31, 331
BciT130I CCWGG 2 cut(s) 197, 353
BclI TGATCA 1 cut(s) 243
BcnI CCSGG 1 cut(s) 47
BglII AGATCT 1 cut(s) 36
BisI GCNGC 2 cut(s) 340, 425
BlsI GCNGC 2 cut(s) 341, 426
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 3 cut(s) 47, 197, 353
Bme18I GGWCC 3 cut(s) 49, 207, 349
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 4 cut(s) 49, 199, 207, 349
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 3 cut(s) 47, 197, 353
BmsI GCATC 1 cut(s) 381
BpmI CTGGAG 2 cut(s) 155, 350
BpuMI CCSGG 1 cut(s) 47
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 45, 195
BsaWI WCCGGW 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 335
Bse1I ACTGG 1 cut(s) 367
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 2 cut(s) 197, 353
BseDI CCNNGG 2 cut(s) 45, 195
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 27, 335
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 367
BseXI GCAGC 2 cut(s) 351, 411
BshFI GGCC 2 cut(s) 200, 318
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 3 cut(s) 25, 47, 336
BslI CCNNNNNNNGG 2 cut(s) 27, 335
BsnI GGCC 2 cut(s) 200, 318
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 5 cut(s) 3, 36, 177, 243, 303
BspACI CCGC 3 cut(s) 70, 148, 159
BspANI GGCC 2 cut(s) 200, 318
BspLI GGNNCC 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 45, 195
BssMI GATC 5 cut(s) 3, 36, 177, 243, 303
BssNI GRCGYC 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 197, 353
Bst6I CTCTTC 4 cut(s) 102, 194, 401, 407
BstACI GRCGYC 1 cut(s) 417
BstDEI CTNAG 1 cut(s) 7
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 5 cut(s) 6, 39, 180, 246, 306
BstMBI GATC 5 cut(s) 3, 36, 177, 243, 303
BstNI CCWGG 2 cut(s) 197, 353
BstSCI CCNGG 3 cut(s) 45, 195, 351
BstV1I GCAGC 2 cut(s) 351, 411
BstX2I RGATCY 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 280
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 2 cut(s) 200, 318
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 374
Cfr13I GGNCC 4 cut(s) 49, 199, 207, 349
CseI GACGC 1 cut(s) 425
Csp6I GTAC 3 cut(s) 313, 382, 409
CviAII CATG 3 cut(s) 139, 184, 286
CviJI RGCY 8 cut(s) 11, 18, 130, 200, 231, 318, 342, 424
CviKI_1 RGCY 8 cut(s) 11, 18, 130, 200, 231, 318, 342, 424
CviQI GTAC 3 cut(s) 313, 382, 409
DdeI CTNAG 1 cut(s) 7
DpnI GATC 5 cut(s) 5, 38, 179, 245, 305
DpnII GATC 5 cut(s) 3, 36, 177, 243, 303
EaeI YGGCCR 1 cut(s) 316
Eam1104I CTCTTC 4 cut(s) 102, 194, 401, 407
EarI CTCTTC 4 cut(s) 102, 194, 401, 407
Eco47I GGWCC 3 cut(s) 49, 207, 349
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 195, 351
FaeI CATG 3 cut(s) 142, 187, 289
FaiI YATR 3 cut(s) 140, 185, 287
FatI CATG 3 cut(s) 138, 183, 285
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 340, 425
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 2 cut(s) 340, 425
GluI GCNGC 2 cut(s) 340, 425
GsuI CTGGAG 2 cut(s) 155, 350
HaeIII GGCC 2 cut(s) 200, 318
HapII CCGG 3 cut(s) 25, 47, 336
HgaI GACGC 1 cut(s) 425
Hin1I GRCGYC 1 cut(s) 417
Hin1II CATG 3 cut(s) 142, 187, 289
HinfI GANTC 3 cut(s) 291, 324, 332
HpaII CCGG 3 cut(s) 25, 47, 336
HphI GGTGA 2 cut(s) 148, 208
Hpy166II GTNNAC 1 cut(s) 384
Hpy188III TCNNGA 3 cut(s) 172, 205, 247
Hpy8I GTNNAC 1 cut(s) 384
Hpy99I CGWCG 2 cut(s) 362, 419
HpyAV CCTTC 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 372
HpyF3I CTNAG 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 417
Hsp92II CATG 3 cut(s) 142, 187, 289
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 5 cut(s) 3, 36, 177, 243, 303
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 2 cut(s) 23, 369
Lsp1109I GCAGC 2 cut(s) 351, 411
LweI GCATC 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 76, 390
MalI GATC 5 cut(s) 5, 38, 179, 245, 305
MboI GATC 5 cut(s) 3, 36, 177, 243, 303
MboII GAAGA 8 cut(s) 31, 46, 76, 89, 181, 187, 388, 394
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 1 cut(s) 250
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 4 cut(s) 105, 212, 242, 410
MroXI GAANNNNTTC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 3 cut(s) 25, 47, 336
MspR9I CCNGG 3 cut(s) 47, 197, 353
MvaI CCWGG 2 cut(s) 197, 353
NciI CCSGG 1 cut(s) 47
NdeII GATC 5 cut(s) 3, 36, 177, 243, 303
NlaIII CATG 3 cut(s) 142, 187, 289
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 291, 324
PkrI GCNGC 2 cut(s) 341, 426
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 195, 351
PspGI CCWGG 2 cut(s) 195, 351
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 4 cut(s) 49, 199, 207, 349
PspXI VCTCGAGB 1 cut(s) 233
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 3 cut(s) 314, 383, 410
RsaNI GTAC 3 cut(s) 313, 382, 409
SapI GCTCTTC 1 cut(s) 194
SatI GCNGC 2 cut(s) 340, 425
Sau3AI GATC 5 cut(s) 3, 36, 177, 243, 303
Sau96I GGNCC 4 cut(s) 49, 199, 207, 349
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 47, 197, 353
SduI GDGCHC 1 cut(s) 366
SetI ASST 2 cut(s) 357, 426
SfaNI GCATC 1 cut(s) 381
Sfr274I CTCGAG 1 cut(s) 233
SinI GGWCC 3 cut(s) 49, 207, 349
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 250
SsiI CCGC 3 cut(s) 70, 148, 159
StyD4I CCNGG 3 cut(s) 45, 195, 351
TaqI TCGA 2 cut(s) 234, 405
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 408
TfiI GAWTC 2 cut(s) 291, 324
TscAI CASTG 1 cut(s) 374
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 339, 424
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 3 cut(s) 103, 142, 155
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 374
VpaK11BI GGWCC 3 cut(s) 49, 207, 349
XapI RAATTY 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.