Rroxscaffold_5G00382190

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002177
Physical Location & Seq
Reverse (-)
62030345 .. 62034270
3926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382190.1

Sequence Viewer

Length: 2031 bp
ATGATTTCCTGGAACGACCTGTACAAGGTCTTGACGGCGGTGGTGCCTCTCTACGTGGCCATGATCTTAGCCTACGGCTCCGTCCGGTGGTGGAAGATCTTCTCCCCGGACCAATGCTCCGGAATCAACCGCTTCGTCGCAATCTTCGCAGTTCCTCTTCTCTCCTTCCACTTCATCTCCACCAACGACCCTTACACCATGAACTTCCGCTTCATCGCCGCCGACACTCTCCAGAAGATCATCATGCTCTTCGCCCTGGCCCTCTGGACCAACTTCACCCGAAACGGAAGCCTCGAGTGGATGATCACCATTTTCTCGCTCTCCACGCTTCCCAATACTCTGGTCATGGGAATCCCCCTGCTGATCGCCATGTACGGCCACCGAATCCCCGAGTCCGGCAGCCTCATGGTCCAGGTCGTCGTGCTCCAGTGCATCATTTGGTACACTCTCTTACTCTTCCTCTTCGAGTACCGCGGCGCCAAGCTGCTCATAATGGAGCAGTTCCCCGAGACCGCCGCCTCCATCGTCTCCTTCAAGGTCGACTCCGACGTCATGTCCCTCGACGGCCGCGACTTCCTCGAAACCGACGCCGAGATCGGCGACGACGGCAAGCTCCACGTCAAGGTGAGGAAGTCCAACGCGTCCAGACGGTCGCTCTCGGCAATGACGCCTCGGCCGTCCAACCTCACCGGAGCCGAGATTTACAGCCTCAGCTCTTCCCGGAATCCAACTCCCCGAGGCTCCAATTTCAACCCCTCCGATTTTTACTCCATGATGGGAGTCCAGGGCTTCAATACCCGCCACTCCAATTTCGGACCCGCCGACTTGTACTCGGTTCAGTCCTCCCGAGGTCCGACTCCCAGACCCTCCAATTTCGAAGAGAATTCTGCTCCAATGGCGCAGACGGTTACTTCTCCCCGGTTCGGGTTTTACCCGGCCCAGACTGTCCCCTCGTCGTACCCGGCTCCGAATCCGGAATTCTCCGCCCCCGTCACTAAAACAACCTCCAAAAATAACCAACCCCAACCGCAACCGCCGCCGCAGCAGGTTAACTCCAACAGTGGCAAAGCGAATCACGACGCGAAAGAGCTCCACATGTTCGTTTGGAGCTCCAGCAATTCCCCTGTTTCCGAAGCCGGAGGGCTCCACGTCTTCGGCGGACCTGACTTCGCCGCGTCGGAGCAATCGGGCCGGTCCGATCAGGGCGCCAAGGAGATCAGGATGTTGGTTGCTGATCACCCCCAGAATGGAGAAACCAAAGTGGCGGTTGCGGAGAGTGACGGCGACCACTACCACCACGGCGGAGAAGCCTTCACGTTCACCGGAAAGGTTGATCAGGGAGAGGGGGAGAGGGAAAAGGAGGGGCCAACCGGACTTAACAAGCAGGGGTCAAGCTCCACTGCCGAGCTACACGGGAAAGGTGGAGGAGGATTGGCGGTTGATCACGAGTCAAGCGGCGGGAAACAAATGCCTCCGGCGAGCGTTATGACGCGTCTGATCTTGATCATGGTTTGGCGGAAGCTTATCCGCAATCCCAACACGTACTCTAGCCTCATCGGTCTCATCTGGTCGCTCATCGCTTTCCGGTGGGGCGTTGCTATGCCAAAAATAATAGAGAAGTCGATCTCCATTCTGTCCGATGCTGGGCTAGGAATGGCCATGTTCAGTTTAGGTCTTTTTATGGCACTTCAACCTAAGATAATAGCATGTGGAAACTCGGTGGCCGGGTTTGCAATGGCCGTGAGATTCCTCACTGGCCCGGCTGTGATGGCTGCAGCCTCCATTGCTGTTGGGCTACGTGGCACCCTCCTCCACTTGGCTATTGTCCAGGCTGCACTTCCTCAAGGAATTGTTCCCTTTGTCTTTGCCAAGGAGTACAATGTTCATCCATCCATTCTTAGCACTGCGGTTATATTCGGGATGTTGATAGCATTACCGATTACGCTGGTTTACTATATCGTTCTCGGACTGCCAAAGTTTGTCTCTAATTTTCCCCAGTTTGATGAAAGGGGGGCAACGCCTCTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

676

Amino Acids

73.55

Weight (kDa)

8.23

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 652 2.8e-127 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 548
AatII GACGTC 1 cut(s) 552
Acc36I ACCTGC 1 cut(s) 1036
AccB1I GGYRCC 4 cut(s) 43, 476, 1205, 1802
AccI GTMKAC 1 cut(s) 540
AccII CGCG 6 cut(s) 474, 570, 641, 1082, 1175, 1492
AccIII TCCGGA 2 cut(s) 119, 973
AcoI YGGCCR 7 cut(s) 57, 376, 565, 674, 1656, 1722, 1737
AcsI RAATTY 2 cut(s) 883, 977
AcyI GRCGYC 5 cut(s) 477, 549, 588, 668, 1206
AfaI GTAC 8 cut(s) 23, 374, 443, 470, 830, 959, 1544, 1877
AfiI CCNNNNNNNGG 9 cut(s) 25, 87, 395, 622, 923, 924, 1247, 1644, 1816
AflIII ACRYGT 4 cut(s) 639, 1095, 1490, 1539
AgsI TTSAA 4 cut(s) 535, 751, 793, 1691
AhdI GACNNNNNGTC 1 cut(s) 553
AjiI CACGTC 2 cut(s) 619, 1150
AjnI CCWGG 5 cut(s) 8, 255, 411, 783, 1827
AluBI AGCT 8 cut(s) 484, 613, 714, 1090, 1110, 1395, 1408, 1522
AluI AGCT 8 cut(s) 484, 613, 714, 1090, 1110, 1395, 1408, 1522
Alw21I GWGCWC 3 cut(s) 426, 1092, 1112
Alw26I GTCTC 4 cut(s) 503, 532, 1565, 1987
Ama87I CYCGRG 5 cut(s) 293, 389, 506, 735, 846
Aor13HI TCCGGA 2 cut(s) 119, 973
ApeKI GCWGC 6 cut(s) 399, 484, 1042, 1772, 1775, 1832
ApoI RAATTY 2 cut(s) 883, 977
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 3 cut(s) 479, 901, 1208
AsuC2I CCSGG 7 cut(s) 107, 721, 919, 935, 962, 1726, 1760
AsuHPI GGTGA 6 cut(s) 268, 298, 637, 679, 1229, 1312
AsuII TTCGAA 1 cut(s) 876
AvaI CYCGRG 5 cut(s) 293, 389, 506, 735, 846
AvaII GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1160, 1194
BalI TGGCCA 2 cut(s) 59, 1658
BanI GGYRCC 4 cut(s) 43, 476, 1205, 1802
BanII GRGCYC 3 cut(s) 1092, 1112, 1146
BauI CACGAG 1 cut(s) 1445
BbsI GAAGAC 1 cut(s) 1144
Bbv12I GWGCWC 3 cut(s) 426, 1092, 1112
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 6 cut(s) 411, 471, 1054, 1759, 1787, 1819
BccI CCATC 4 cut(s) 530, 769, 1762, 1897
BceAI ACGGC 9 cut(s) 51, 91, 391, 580, 622, 661, 1297, 1315, 1724
BciT130I CCWGG 5 cut(s) 10, 257, 413, 785, 1829
BclI TGATCA 5 cut(s) 303, 1234, 1333, 1441, 1503
BcnI CCSGG 7 cut(s) 107, 721, 919, 935, 962, 1726, 1760
BcoDI GTCTC 4 cut(s) 503, 532, 1565, 1987
BfaI CTAG 3 cut(s) 1548, 1649, 2024
BfmI CTRYAG 1 cut(s) 1773
BfoI RGCGCY 2 cut(s) 480, 1209
BfuAI ACCTGC 1 cut(s) 1036
BglII AGATCT 1 cut(s) 96
Bme18I GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1160, 1194
BmeRI GACNNNNNGTC 1 cut(s) 553
BmeT110I CYCGRG 5 cut(s) 293, 389, 506, 735, 846
BmgBI CACGTC 2 cut(s) 619, 1150
BmrI ACTGGG 1 cut(s) 1990
BmsI GCATC 2 cut(s) 441, 1630
BmuI ACTGGG 1 cut(s) 1990
BpiI GAAGAC 1 cut(s) 1144
BpmI CTGGAG 3 cut(s) 215, 410, 1096
Bpu10I CCTNAGC 1 cut(s) 710
Bpu14I TTCGAA 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 1827
BpuMI CCSGG 7 cut(s) 107, 721, 919, 935, 962, 1726, 1760
BsaAI YACGTR 3 cut(s) 55, 1542, 1799
BsaBI GATNNNNATC 1 cut(s) 1502
BsaHI GRCGYC 5 cut(s) 477, 549, 588, 668, 1206
BsaI GGTCTC 2 cut(s) 503, 1565
BsaWI WCCGGW 7 cut(s) 84, 119, 689, 973, 1322, 1370, 1584
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 161, 191
Bsc4I CCNNNNNNNGG 9 cut(s) 25, 87, 395, 622, 923, 924, 1247, 1644, 1816
Bse118I RCCGGY 1 cut(s) 1191
Bse1I ACTGG 3 cut(s) 427, 1759, 1996
Bse3DI GCAATG 3 cut(s) 669, 1740, 1782
Bse8I GATNNNNATC 1 cut(s) 1502
BseAI TCCGGA 2 cut(s) 119, 973
BseBI CCWGG 5 cut(s) 10, 257, 413, 785, 1829
BseGI GGATG 5 cut(s) 306, 1227, 1885, 1889, 1926
BseJI GATNNNNATC 1 cut(s) 1502
BseLI CCNNNNNNNGG 9 cut(s) 25, 87, 395, 622, 923, 924, 1247, 1644, 1816
BseMI GCAATG 3 cut(s) 669, 1740, 1782
BseMII CTCAG 1 cut(s) 724
BseNI ACTGG 3 cut(s) 427, 1759, 1996
BseRI GAGGAG 2 cut(s) 1440, 1799
BseX3I CGGCCG 2 cut(s) 565, 674
BseXI GCAGC 6 cut(s) 411, 471, 1054, 1759, 1787, 1819
BseYI CCCAGC 1 cut(s) 1643
BsgI GTGCAG 1 cut(s) 1818
Bsh1236I CGCG 6 cut(s) 474, 570, 641, 1082, 1175, 1492
Bsh1285I CGRYCG 3 cut(s) 568, 653, 677
BshNI GGYRCC 4 cut(s) 43, 476, 1205, 1802
BsiEI CGRYCG 3 cut(s) 568, 653, 677
BsiHKAI GWGCWC 3 cut(s) 426, 1092, 1112
BsiHKCI CYCGRG 5 cut(s) 293, 389, 506, 735, 846
BslFI GGGAC 2 cut(s) 541, 932
BslI CCNNNNNNNGG 9 cut(s) 25, 87, 395, 622, 923, 924, 1247, 1644, 1816
BsmAI GTCTC 4 cut(s) 503, 532, 1565, 1987
BsmBI CGTCTC 1 cut(s) 532
BsmFI GGGAC 2 cut(s) 541, 932
Bso31I GGTCTC 2 cut(s) 503, 1565
BsoBI CYCGRG 5 cut(s) 293, 389, 506, 735, 846
Bsp119I TTCGAA 1 cut(s) 876
Bsp1286I GDGCHC 4 cut(s) 426, 1092, 1112, 1146
Bsp13I TCCGGA 2 cut(s) 119, 973
Bsp1407I TGTACA 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 723
BspEI TCCGGA 2 cut(s) 119, 973
BspFNI CGCG 6 cut(s) 474, 570, 641, 1082, 1175, 1492
BspMAI CTGCAG 1 cut(s) 1777
BspMI ACCTGC 1 cut(s) 1036
BspQI GCTCTTC 2 cut(s) 254, 721
BspT104I TTCGAA 1 cut(s) 876
BspT107I GGYRCC 4 cut(s) 43, 476, 1205, 1802
BspTNI GGTCTC 2 cut(s) 503, 1565
BsrDI GCAATG 3 cut(s) 669, 1740, 1782
BsrFI RCCGGY 1 cut(s) 1191
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 3 cut(s) 427, 1759, 1996
BssAI RCCGGY 1 cut(s) 1191
BssNI GRCGYC 5 cut(s) 477, 549, 588, 668, 1206
BssSI CACGAG 1 cut(s) 1445
BssT1I CCWWGG 2 cut(s) 1209, 1869
Bst2BI CACGAG 1 cut(s) 1445
Bst2UI CCWGG 5 cut(s) 10, 257, 413, 785, 1829
Bst4CI ACNGT 4 cut(s) 651, 907, 946, 1061
Bst6I CTCTTC 6 cut(s) 162, 254, 461, 467, 721, 873
BstACI GRCGYC 5 cut(s) 477, 549, 588, 668, 1206
BstAUI TGTACA 1 cut(s) 21
BstBAI YACGTR 3 cut(s) 55, 1542, 1799
BstBI TTCGAA 1 cut(s) 876
BstC8I GCNNGC 2 cut(s) 611, 1480
BstDEI CTNAG 4 cut(s) 67, 710, 1695, 1898
BstDSI CCRYGG 2 cut(s) 472, 1297
BstENI CCTNNNNNAGG 1 cut(s) 23
BstF5I GGATG 5 cut(s) 306, 1227, 1885, 1889, 1926
BstFNI CGCG 6 cut(s) 474, 570, 641, 1082, 1175, 1492
BstH2I RGCGCY 2 cut(s) 480, 1209
BstHHI GCGC 3 cut(s) 479, 901, 1208
BstMAI GTCTC 4 cut(s) 503, 532, 1565, 1987
BstMCI CGRYCG 3 cut(s) 568, 653, 677
BstMWI GCNNNNNNNGC 9 cut(s) 146, 325, 606, 896, 1036, 1042, 1730, 1769, 1784
BstNI CCWGG 5 cut(s) 10, 257, 413, 785, 1829
BstNSI RCATGY 2 cut(s) 1099, 1710
BstSFI CTRYAG 1 cut(s) 1773
BstUI CGCG 6 cut(s) 474, 570, 641, 1082, 1175, 1492
BstV1I GCAGC 6 cut(s) 411, 471, 1054, 1759, 1787, 1819
BstV2I GAAGAC 1 cut(s) 1144
BstX2I RGATCY 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 1 cut(s) 96
BstZI CGGCCG 2 cut(s) 565, 674
BtgI CCRYGG 2 cut(s) 472, 1297
BtgZI GCGATG 2 cut(s) 199, 1561
BtrI CACGTC 2 cut(s) 619, 1150
BtsCI GGATG 5 cut(s) 306, 1227, 1885, 1889, 1926
BtsI GCAGTG 2 cut(s) 1398, 1902
BtsIMutI CAGTG 5 cut(s) 434, 1066, 1398, 1752, 1902
BveI ACCTGC 1 cut(s) 1036
Cac8I GCNNGC 2 cut(s) 611, 1480
CfoI GCGC 3 cut(s) 479, 901, 1208
Cfr10I RCCGGY 1 cut(s) 1191
Cfr42I CCGCGG 1 cut(s) 475
CpoI CGGWCCG 1 cut(s) 1194
CseI GACGC 7 cut(s) 596, 630, 676, 1088, 1164, 1481, 1498
Csp6I GTAC 8 cut(s) 22, 373, 442, 469, 829, 958, 1543, 1876
CspI CGGWCCG 1 cut(s) 1194
CviQI GTAC 8 cut(s) 22, 373, 442, 469, 829, 958, 1543, 1876
DdeI CTNAG 4 cut(s) 67, 710, 1695, 1898
DinI GGCGCC 2 cut(s) 478, 1207
DrdI GACNNNNNNGTC 1 cut(s) 548
DriI GACNNNNNGTC 1 cut(s) 553
DseDI GACNNNNNNGTC 1 cut(s) 548
EaeI YGGCCR 7 cut(s) 57, 376, 565, 674, 1656, 1722, 1737
EagI CGGCCG 2 cut(s) 565, 674
Eam1104I CTCTTC 6 cut(s) 162, 254, 461, 467, 721, 873
Eam1105I GACNNNNNGTC 1 cut(s) 553
EarI CTCTTC 6 cut(s) 162, 254, 461, 467, 721, 873
EciI GGCGGA 4 cut(s) 973, 1173, 1317, 1531
Ecl136II GAGCTC 2 cut(s) 1090, 1110
EclXI CGGCCG 2 cut(s) 565, 674
Eco130I CCWWGG 2 cut(s) 1209, 1869
Eco24I GRGCYC 3 cut(s) 1092, 1112, 1146
Eco31I GGTCTC 2 cut(s) 503, 1565
Eco47I GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1160, 1194
Eco52I CGGCCG 2 cut(s) 565, 674
Eco53kI GAGCTC 2 cut(s) 1090, 1110
Eco88I CYCGRG 5 cut(s) 293, 389, 506, 735, 846
EcoICRI GAGCTC 2 cut(s) 1090, 1110
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoRI GAATTC 2 cut(s) 883, 977
EcoRII CCWGG 5 cut(s) 8, 255, 411, 783, 1827
EcoT14I CCWWGG 2 cut(s) 1209, 1869
EcoT38I GRGCYC 3 cut(s) 1092, 1112, 1146
EgeI GGCGCC 2 cut(s) 478, 1207
EheI GGCGCC 2 cut(s) 478, 1207
ErhI CCWWGG 2 cut(s) 1209, 1869
Esp3I CGTCTC 1 cut(s) 532
FaqI GGGAC 2 cut(s) 541, 932
FauI CCCGC 3 cut(s) 806, 826, 1451
FbaI TGATCA 5 cut(s) 303, 1234, 1333, 1441, 1503
FblI GTMKAC 1 cut(s) 540
FokI GGATG 5 cut(s) 313, 1234, 1872, 1876, 1933
FriOI GRGCYC 3 cut(s) 1092, 1112, 1146
FspBI CTAG 3 cut(s) 1548, 1649, 2024
GlaI GCGC 3 cut(s) 478, 900, 1207
GsaI CCCAGC 1 cut(s) 1647
GsuI CTGGAG 3 cut(s) 215, 410, 1096
HaeII RGCGCY 2 cut(s) 480, 1209
HgaI GACGC 7 cut(s) 596, 630, 676, 1088, 1164, 1481, 1498
HhaI GCGC 3 cut(s) 479, 901, 1208
Hin1I GRCGYC 5 cut(s) 477, 549, 588, 668, 1206
Hin6I GCGC 3 cut(s) 477, 899, 1206
HinP1I GCGC 3 cut(s) 477, 899, 1206
HincII GTYRAC 2 cut(s) 541, 1051
HindII GTYRAC 2 cut(s) 541, 1051
HindIII AAGCTT 1 cut(s) 1520
HpaI GTTAAC 1 cut(s) 1051
HphI GGTGA 6 cut(s) 268, 298, 637, 679, 1229, 1312
Hpy166II GTNNAC 5 cut(s) 444, 541, 1051, 1320, 1951
Hpy8I GTNNAC 5 cut(s) 444, 541, 1051, 1320, 1951
HpyAV CCTTC 3 cut(s) 175, 541, 1321
HpyCH4III ACNGT 4 cut(s) 651, 907, 946, 1061
HpyCH4IV ACGT 7 cut(s) 54, 549, 618, 1149, 1316, 1541, 1798
HpyCH4V TGCA 4 cut(s) 432, 1733, 1775, 1835
HpyF10VI GCNNNNNNNGC 9 cut(s) 146, 325, 606, 896, 1036, 1042, 1730, 1769, 1784
HpyF3I CTNAG 4 cut(s) 67, 710, 1695, 1898
HpySE526I ACGT 7 cut(s) 54, 549, 618, 1149, 1316, 1541, 1798
Hsp92I GRCGYC 5 cut(s) 477, 549, 588, 668, 1206
HspAI GCGC 3 cut(s) 477, 899, 1206
KasI GGCGCC 2 cut(s) 476, 1205
Kpn2I TCCGGA 2 cut(s) 119, 973
Ksp22I TGATCA 5 cut(s) 303, 1234, 1333, 1441, 1503
KspAI GTTAAC 1 cut(s) 1051
KspI CCGCGG 1 cut(s) 475
LguI GCTCTTC 2 cut(s) 254, 721
Lsp1109I GCAGC 6 cut(s) 411, 471, 1054, 1759, 1787, 1819
LweI GCATC 2 cut(s) 441, 1630
MaeI CTAG 3 cut(s) 1548, 1649, 2024
MaeII ACGT 7 cut(s) 54, 549, 618, 1149, 1316, 1541, 1798
MaeIII GTNAC 3 cut(s) 907, 991, 1277
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 4 cut(s) 426, 1092, 1112, 1146
MlsI TGGCCA 2 cut(s) 59, 1658
MluCI AATT 8 cut(s) 745, 808, 871, 883, 977, 1117, 1848, 1987
MluI ACGCGT 2 cut(s) 639, 1490
MluNI TGGCCA 2 cut(s) 59, 1658
Mly113I GGCGCC 2 cut(s) 477, 1206
MlyI GAGTC 5 cut(s) 401, 536, 789, 850, 1457
MmeI TCCRAC 7 cut(s) 570, 660, 705, 752, 878, 1080, 1158
Mox20I TGGCCA 2 cut(s) 59, 1658
MroI TCCGGA 2 cut(s) 119, 973
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 2 cut(s) 59, 1658
MseI TTAA 3 cut(s) 1050, 1377, 2029
Msp20I TGGCCA 2 cut(s) 59, 1658
MspA1I CMGCKG 1 cut(s) 474
MvaI CCWGG 5 cut(s) 10, 257, 413, 785, 1829
MvnI CGCG 6 cut(s) 474, 570, 641, 1082, 1175, 1492
MwoI GCNNNNNNNGC 9 cut(s) 146, 325, 606, 896, 1036, 1042, 1730, 1769, 1784
NarI GGCGCC 2 cut(s) 477, 1206
NciI CCSGG 7 cut(s) 107, 721, 919, 935, 962, 1726, 1760
NmeAIII GCCGAG 5 cut(s) 616, 638, 652, 721, 1429
NmuCI GTSAC 2 cut(s) 991, 1277
NspI RCATGY 2 cut(s) 1099, 1710
NspV TTCGAA 1 cut(s) 876
PaeR7I CTCGAG 1 cut(s) 293
PciI ACATGT 1 cut(s) 1095
PciSI GCTCTTC 2 cut(s) 254, 721
PcsI WCGNNNNNNNCGW 5 cut(s) 291, 546, 567, 674, 819
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 7 cut(s) 123, 351, 384, 724, 970, 1072, 1746
PfoI TCCNGGA 2 cut(s) 8, 719
PleI GAGTC 5 cut(s) 400, 536, 788, 850, 1456
PluTI GGCGCC 2 cut(s) 480, 1209
PpsI GAGTC 5 cut(s) 400, 536, 788, 850, 1456
Ppu21I YACGTR 3 cut(s) 55, 1542, 1799
PscI ACATGT 1 cut(s) 1095
Psp124BI GAGCTC 2 cut(s) 1092, 1112
Psp6I CCWGG 5 cut(s) 8, 255, 411, 783, 1827
PspFI CCCAGC 1 cut(s) 1643
PspGI CCWGG 5 cut(s) 8, 255, 411, 783, 1827
PspXI VCTCGAGB 1 cut(s) 293
PsrI GAACNNNNNNTAC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 1777
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 8 cut(s) 23, 374, 443, 470, 830, 959, 1544, 1877
RsaNI GTAC 8 cut(s) 22, 373, 442, 469, 829, 958, 1543, 1876
Rsr2I CGGWCCG 1 cut(s) 1194
RsrII CGGWCCG 1 cut(s) 1194
SacI GAGCTC 2 cut(s) 1092, 1112
SacII CCGCGG 1 cut(s) 475
SalI GTCGAC 1 cut(s) 539
SapI GCTCTTC 2 cut(s) 254, 721
SaqAI TTAA 3 cut(s) 1050, 1377, 2029
SchI GAGTC 5 cut(s) 401, 536, 789, 850, 1457
SduI GDGCHC 4 cut(s) 426, 1092, 1112, 1146
SfaNI GCATC 2 cut(s) 441, 1630
SfcI CTRYAG 1 cut(s) 1773
SfoI GGCGCC 2 cut(s) 478, 1207
Sfr274I CTCGAG 1 cut(s) 293
Sfr303I CCGCGG 1 cut(s) 475
SfuI TTCGAA 1 cut(s) 876
SgrBI CCGCGG 1 cut(s) 475
SinI GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1160, 1194
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 293, 1842
SmoI CTYRAG 2 cut(s) 293, 1842
Sse9I AATT 8 cut(s) 745, 808, 871, 883, 977, 1117, 1848, 1987
SspDI GGCGCC 2 cut(s) 476, 1205
SspMI CTAG 3 cut(s) 1548, 1649, 2024
SstI GAGCTC 2 cut(s) 1092, 1112
StyI CCWWGG 2 cut(s) 1209, 1869
TaaI ACNGT 4 cut(s) 651, 907, 946, 1061
TaiI ACGT 7 cut(s) 57, 552, 621, 1152, 1319, 1544, 1801
TaqI TCGA 7 cut(s) 294, 465, 540, 561, 579, 876, 1622
TaqII GACCGA 1 cut(s) 1547
TasI AATT 8 cut(s) 745, 808, 871, 883, 977, 1117, 1848, 1987
TatI WGTACW 3 cut(s) 21, 828, 1875
TauI GCSGC 8 cut(s) 221, 477, 518, 570, 1039, 1042, 1175, 1458
TfiI GAWTC 7 cut(s) 123, 351, 384, 724, 970, 1072, 1746
Tru1I TTAA 3 cut(s) 1050, 1377, 2029
Tru9I TTAA 3 cut(s) 1050, 1377, 2029
TscAI CASTG 5 cut(s) 434, 1066, 1405, 1759, 1909
TseFI GTSAC 2 cut(s) 991, 1277
TseI GCWGC 6 cut(s) 399, 484, 1042, 1772, 1775, 1832
Tsp45I GTSAC 2 cut(s) 991, 1277
TspDTI ATGAA 5 cut(s) 163, 202, 215, 1874, 2019
TspGWI ACGGA 2 cut(s) 70, 300
TspRI CASTG 5 cut(s) 434, 1066, 1405, 1759, 1909
VpaK11BI GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1160, 1194
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 2 cut(s) 883, 977
XceI RCATGY 2 cut(s) 1099, 1710
XhoI CTCGAG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 3 cut(s) 1548, 1649, 2024
ZraI GACGTC 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.