Rh4DG390900

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002177
Physical Location & Seq
Reverse (-)
60722397 .. 60727099
4703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG390900.1

Sequence Viewer

Length: 1719 bp
ATGATTTCCTGGAACGACCTCTACAAGGTCTTGACGGCGGTGGTGCCTCTGTACGTGGCCATGATCTTAGCCTACGGCTCCGTGCGGTGGTGGAAGATCTTCTCCCCGGACCAATGCTCCGGCATCAACCGTTTCGTCGCAATCTTCGCAGTTCCTCTTCTCTCCTTCCACTTCATCTCCACCAACGACCCTTACATCATGAACTTCCGCTTCATCGCCGCCGACACTCTCCAGAAGATCATCATGCTCTTCGCCCTGGCCCTCTGGACCAACTTCACCCGAAACGGAAGCCTCGAGTGGATGATCACGATTTTCTCGCTCTCCACGCTTCCCAATACTCTGGTCATGGGAATCCCGCTGCTGATCGCCATGTACGGCCACCGAATCCCGCAGTCCGGCAGCCTCATGGTCCAGGTCGTCGTGCTCCAGTGCATCATCTGGTACACTCTGCTACTCTTCCTCTTCGAGTACCGCGGCGCCAAGCTGCTGATAATGGAGCAGTTCCCGGAGACCGCCGCCTCCATCGTCTCCTTCAAGGTCGACTCCGACGTCATGTCCCTCGACGGCCGCGACTTCCTCGAAACCGACGCCGAGATCGGCGACGACGGCAAGCTCCACGTCAAGGTGAGGAAGTCCAACGCGTCCAGACGGTCGCTCTCCGCAATGACGCCTCGGCCGTCCAACCTCACCGGAGCCGAGATTTACAGCCTCAGCTCTTCCCGGAATCCCACTCCCCGTGGCTCCAATTTCAACCCCTCCGATTTTTACTCCATGATGGGAGTCCAGGGCTTCAATACCCGCCACTCCAATTTCGGACCCGCCGACTTGTACTCGGTTCAGTCCTCCCGAGGTCCGACTCCCAGACCCTCCAATTTCGAAGAGAATTCTGCCCCAATGGCGCAGACGGTTACTTCTCCCCGGTTCGGGTTTTACCCGGCCCAGACTGTCCCCTCGTCGTACCCGGCTCCGAATCCGGAATTCTCCGCCCCCCTCACTAAAACAACCTCCAAAAATAACCAACCGCAACCGCAACTCCAACCCCAACCCCAACCGCCGCCGCAGCAGGTTAACTCCAACAACAGTAGCAAAGCGAATCACGACGCGAAAGAGCTCCACATGTTCGTTTGGAGCTCCAGCAATTCCCCTGTTTCCGAAGGCGGAGGGCTCCACGTCTTCGGAGGACCTGACTTCGCCGCGTCGGAGCAATCGGGGCGGTCCGATCAGGGCGCCAAGGAGATCAGGATGTTGGTTGCTGACCACCCCCAGAATGGAGAAACCAAAGTGGCGGTTGCGGAGAGTGACGGCGATCACTACCACCACGGCGGAGAAGCCTTCACGTTCACCGGAAAGGTTGATCAGGGAGAGGAGGAGAGAGAAAAGGAGGGGCCAACCGGACTTAACAAGCAGGGGTCGAGCTCCACTGCCGAGCTACACGGGAAAGGTGGAGGAGGAGGAGTGGGGGTTGATCACGAGTCAAGCGGCGGAAAACAAATGCCTCCGGCGAGCGTTATGACGCGTCTGATCTTGATCATGGTTTGGCGGAAGCTTATCCGCAATCCCAACACGTACTCTAGCCTCATCGGTCTCATCTGGTCGCTCATCGCTTTCCGGTGGGGCGTTGCTATGCCAAAAATAATAGAGAAGTCGATCTCCATTCTGTCCGATGCTGGGCTAGGAATGGCTATGTTCAGTTTAGGTAAGTTGCATTTCCTCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

572

Amino Acids

62.84

Weight (kDa)

7.81

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 566 4.7e-89 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 548
AatII GACGTC 1 cut(s) 552
Acc36I ACCTGC 1 cut(s) 1054
AccB1I GGYRCC 3 cut(s) 43, 476, 1226
AccI GTMKAC 1 cut(s) 540
AccII CGCG 6 cut(s) 474, 570, 641, 1103, 1196, 1516
AccIII TCCGGA 1 cut(s) 973
AcoI YGGCCR 4 cut(s) 57, 376, 565, 674
AcsI RAATTY 2 cut(s) 883, 977
AcyI GRCGYC 5 cut(s) 477, 549, 588, 668, 1227
AfaI GTAC 7 cut(s) 53, 374, 443, 470, 830, 959, 1568
AfiI CCNNNNNNNGG 8 cut(s) 25, 87, 395, 622, 923, 924, 1268, 1668
AflIII ACRYGT 4 cut(s) 639, 1116, 1514, 1563
AgsI TTSAA 3 cut(s) 535, 751, 793
AhdI GACNNNNNGTC 1 cut(s) 553
AjiI CACGTC 2 cut(s) 619, 1171
AjnI CCWGG 4 cut(s) 8, 255, 411, 783
AluBI AGCT 8 cut(s) 484, 613, 714, 1111, 1131, 1416, 1429, 1546
AluI AGCT 8 cut(s) 484, 613, 714, 1111, 1131, 1416, 1429, 1546
Alw21I GWGCWC 4 cut(s) 426, 1113, 1133, 1418
Alw26I GTCTC 3 cut(s) 503, 532, 1589
Ama87I CYCGRG 2 cut(s) 293, 846
Aor13HI TCCGGA 1 cut(s) 973
AoxI GGCC 7 cut(s) 57, 258, 376, 565, 674, 936, 1385
ApeKI GCWGC 4 cut(s) 358, 399, 484, 1060
ApoI RAATTY 2 cut(s) 883, 977
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 3 cut(s) 479, 901, 1229
AsuC2I CCSGG 6 cut(s) 107, 506, 721, 919, 935, 962
AsuHPI GGTGA 4 cut(s) 268, 637, 679, 1333
AsuII TTCGAA 1 cut(s) 876
AvaI CYCGRG 2 cut(s) 293, 846
AvaII GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1181, 1215
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 3 cut(s) 43, 476, 1226
BanII GRGCYC 4 cut(s) 1113, 1133, 1167, 1418
BauI CACGAG 1 cut(s) 1469
BbsI GAAGAC 1 cut(s) 1165
Bbv12I GWGCWC 4 cut(s) 426, 1113, 1133, 1418
BbvCI CCTCAGC 1 cut(s) 710
BbvI GCAGC 4 cut(s) 345, 411, 471, 1072
BccI CCATC 2 cut(s) 530, 769
BceAI ACGGC 8 cut(s) 51, 91, 391, 580, 622, 661, 1318, 1336
BciT130I CCWGG 4 cut(s) 10, 257, 413, 785
BclI TGATCA 4 cut(s) 303, 1354, 1465, 1527
BcnI CCSGG 6 cut(s) 107, 506, 721, 919, 935, 962
BcoDI GTCTC 3 cut(s) 503, 532, 1589
BfaI CTAG 2 cut(s) 1572, 1673
BfoI RGCGCY 2 cut(s) 480, 1230
BfuAI ACCTGC 1 cut(s) 1054
BglI GCCNNNNNGGC 1 cut(s) 896
BglII AGATCT 1 cut(s) 96
Bme18I GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1181, 1215
BmeRI GACNNNNNGTC 1 cut(s) 553
BmeT110I CYCGRG 2 cut(s) 293, 846
BmgBI CACGTC 2 cut(s) 619, 1171
BmsI GCATC 3 cut(s) 132, 441, 1654
BpiI GAAGAC 1 cut(s) 1165
BpmI CTGGAG 3 cut(s) 215, 410, 1117
Bpu10I CCTNAGC 1 cut(s) 710
Bpu14I TTCGAA 1 cut(s) 876
BpuMI CCSGG 6 cut(s) 107, 506, 721, 919, 935, 962
BsaAI YACGTR 2 cut(s) 55, 1566
BsaBI GATNNNNATC 1 cut(s) 1526
BsaHI GRCGYC 5 cut(s) 477, 549, 588, 668, 1227
BsaI GGTCTC 2 cut(s) 503, 1589
BsaWI WCCGGW 5 cut(s) 689, 973, 1343, 1391, 1608
Bsc4I CCNNNNNNNGG 8 cut(s) 25, 87, 395, 622, 923, 924, 1268, 1668
Bse1I ACTGG 1 cut(s) 427
Bse3DI GCAATG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 1526
BseAI TCCGGA 1 cut(s) 973
BseBI CCWGG 4 cut(s) 10, 257, 413, 785
BseGI GGATG 2 cut(s) 306, 1248
BseJI GATNNNNATC 1 cut(s) 1526
BseLI CCNNNNNNNGG 8 cut(s) 25, 87, 395, 622, 923, 924, 1268, 1668
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 1 cut(s) 724
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 5 cut(s) 1379, 1382, 1461, 1464, 1467
BseX3I CGGCCG 2 cut(s) 565, 674
BseXI GCAGC 4 cut(s) 345, 411, 471, 1072
BseYI CCCAGC 1 cut(s) 1667
Bsh1236I CGCG 6 cut(s) 474, 570, 641, 1103, 1196, 1516
Bsh1285I CGRYCG 3 cut(s) 568, 653, 677
BshFI GGCC 7 cut(s) 59, 260, 378, 567, 676, 938, 1387
BshNI GGYRCC 3 cut(s) 43, 476, 1226
BsiEI CGRYCG 3 cut(s) 568, 653, 677
BsiHKAI GWGCWC 4 cut(s) 426, 1113, 1133, 1418
BsiHKCI CYCGRG 2 cut(s) 293, 846
BslFI GGGAC 2 cut(s) 541, 932
BslI CCNNNNNNNGG 8 cut(s) 25, 87, 395, 622, 923, 924, 1268, 1668
BsmAI GTCTC 3 cut(s) 503, 532, 1589
BsmBI CGTCTC 1 cut(s) 532
BsmFI GGGAC 2 cut(s) 541, 932
BsnI GGCC 7 cut(s) 59, 260, 378, 567, 676, 938, 1387
Bso31I GGTCTC 2 cut(s) 503, 1589
BsoBI CYCGRG 2 cut(s) 293, 846
Bsp119I TTCGAA 1 cut(s) 876
Bsp1286I GDGCHC 5 cut(s) 426, 1113, 1133, 1167, 1418
Bsp13I TCCGGA 1 cut(s) 973
BspANI GGCC 7 cut(s) 59, 260, 378, 567, 676, 938, 1387
BspCNI CTCAG 1 cut(s) 723
BspEI TCCGGA 1 cut(s) 973
BspFNI CGCG 6 cut(s) 474, 570, 641, 1103, 1196, 1516
BspHI TCATGA 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 1054
BspQI GCTCTTC 2 cut(s) 254, 721
BspT104I TTCGAA 1 cut(s) 876
BspT107I GGYRCC 3 cut(s) 43, 476, 1226
BspTNI GGTCTC 2 cut(s) 503, 1589
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 1 cut(s) 427
BssNI GRCGYC 5 cut(s) 477, 549, 588, 668, 1227
BssSI CACGAG 1 cut(s) 1469
BssT1I CCWWGG 1 cut(s) 1230
Bst2BI CACGAG 1 cut(s) 1469
Bst2UI CCWGG 4 cut(s) 10, 257, 413, 785
Bst4CI ACNGT 5 cut(s) 131, 651, 907, 946, 1082
Bst6I CTCTTC 6 cut(s) 162, 254, 461, 467, 721, 873
BstACI GRCGYC 5 cut(s) 477, 549, 588, 668, 1227
BstBAI YACGTR 2 cut(s) 55, 1566
BstBI TTCGAA 1 cut(s) 876
BstC8I GCNNGC 2 cut(s) 611, 1504
BstDEI CTNAG 2 cut(s) 67, 710
BstDSI CCRYGG 3 cut(s) 472, 736, 1318
BstENI CCTNNNNNAGG 1 cut(s) 23
BstF5I GGATG 2 cut(s) 306, 1248
BstFNI CGCG 6 cut(s) 474, 570, 641, 1103, 1196, 1516
BstH2I RGCGCY 2 cut(s) 480, 1230
BstHHI GCGC 3 cut(s) 479, 901, 1229
BstMAI GTCTC 3 cut(s) 503, 532, 1589
BstMCI CGRYCG 3 cut(s) 568, 653, 677
BstMWI GCNNNNNNNGC 6 cut(s) 146, 325, 606, 896, 1060, 1210
BstNI CCWGG 4 cut(s) 10, 257, 413, 785
BstNSI RCATGY 1 cut(s) 1120
BstUI CGCG 6 cut(s) 474, 570, 641, 1103, 1196, 1516
BstV1I GCAGC 4 cut(s) 345, 411, 471, 1072
BstV2I GAAGAC 1 cut(s) 1165
BstX2I RGATCY 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 1 cut(s) 96
BstZI CGGCCG 2 cut(s) 565, 674
BsuRI GGCC 7 cut(s) 59, 260, 378, 567, 676, 938, 1387
BtgI CCRYGG 3 cut(s) 472, 736, 1318
BtgZI GCGATG 2 cut(s) 199, 1585
BtrI CACGTC 2 cut(s) 619, 1171
BtsCI GGATG 2 cut(s) 306, 1248
BtsI GCAGTG 1 cut(s) 1419
BtsIMutI CAGTG 2 cut(s) 434, 1419
BveI ACCTGC 1 cut(s) 1054
Cac8I GCNNGC 2 cut(s) 611, 1504
CciI TCATGA 1 cut(s) 198
CfoI GCGC 3 cut(s) 479, 901, 1229
Cfr42I CCGCGG 1 cut(s) 475
CpoI CGGWCCG 1 cut(s) 1215
CseI GACGC 7 cut(s) 596, 630, 676, 1109, 1185, 1505, 1522
Csp6I GTAC 7 cut(s) 52, 373, 442, 469, 829, 958, 1567
CspI CGGWCCG 1 cut(s) 1215
CviQI GTAC 7 cut(s) 52, 373, 442, 469, 829, 958, 1567
DdeI CTNAG 2 cut(s) 67, 710
DinI GGCGCC 2 cut(s) 478, 1228
DrdI GACNNNNNNGTC 1 cut(s) 548
DriI GACNNNNNGTC 1 cut(s) 553
DseDI GACNNNNNNGTC 1 cut(s) 548
EaeI YGGCCR 4 cut(s) 57, 376, 565, 674
EagI CGGCCG 2 cut(s) 565, 674
Eam1104I CTCTTC 6 cut(s) 162, 254, 461, 467, 721, 873
Eam1105I GACNNNNNGTC 1 cut(s) 553
EarI CTCTTC 6 cut(s) 162, 254, 461, 467, 721, 873
EciI GGCGGA 5 cut(s) 973, 1173, 1338, 1497, 1555
Ecl136II GAGCTC 3 cut(s) 1111, 1131, 1416
EclXI CGGCCG 2 cut(s) 565, 674
Eco130I CCWWGG 1 cut(s) 1230
Eco24I GRGCYC 4 cut(s) 1113, 1133, 1167, 1418
Eco31I GGTCTC 2 cut(s) 503, 1589
Eco47I GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1181, 1215
Eco52I CGGCCG 2 cut(s) 565, 674
Eco53kI GAGCTC 3 cut(s) 1111, 1131, 1416
Eco88I CYCGRG 2 cut(s) 293, 846
EcoICRI GAGCTC 3 cut(s) 1111, 1131, 1416
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 1181
EcoRI GAATTC 2 cut(s) 883, 977
EcoRII CCWGG 4 cut(s) 8, 255, 411, 783
EcoT14I CCWWGG 1 cut(s) 1230
EcoT38I GRGCYC 4 cut(s) 1113, 1133, 1167, 1418
EgeI GGCGCC 2 cut(s) 478, 1228
EheI GGCGCC 2 cut(s) 478, 1228
ErhI CCWWGG 1 cut(s) 1230
Esp3I CGTCTC 1 cut(s) 532
FaqI GGGAC 2 cut(s) 541, 932
FauI CCCGC 4 cut(s) 363, 396, 806, 826
FbaI TGATCA 4 cut(s) 303, 1354, 1465, 1527
FblI GTMKAC 1 cut(s) 540
FokI GGATG 2 cut(s) 313, 1255
FriOI GRGCYC 4 cut(s) 1113, 1133, 1167, 1418
FspBI CTAG 2 cut(s) 1572, 1673
GlaI GCGC 3 cut(s) 478, 900, 1228
GsaI CCCAGC 1 cut(s) 1671
GsuI CTGGAG 3 cut(s) 215, 410, 1117
HaeII RGCGCY 2 cut(s) 480, 1230
HaeIII GGCC 7 cut(s) 59, 260, 378, 567, 676, 938, 1387
HgaI GACGC 7 cut(s) 596, 630, 676, 1109, 1185, 1505, 1522
HhaI GCGC 3 cut(s) 479, 901, 1229
Hin1I GRCGYC 5 cut(s) 477, 549, 588, 668, 1227
Hin6I GCGC 3 cut(s) 477, 899, 1227
HinP1I GCGC 3 cut(s) 477, 899, 1227
HincII GTYRAC 2 cut(s) 541, 1069
HindII GTYRAC 2 cut(s) 541, 1069
HindIII AAGCTT 1 cut(s) 1544
HinfI GANTC 9 cut(s) 351, 384, 542, 724, 780, 856, 970, 1093, 1472
HpaI GTTAAC 1 cut(s) 1069
HphI GGTGA 4 cut(s) 268, 637, 679, 1333
Hpy166II GTNNAC 4 cut(s) 444, 541, 1069, 1341
Hpy8I GTNNAC 4 cut(s) 444, 541, 1069, 1341
HpyAV CCTTC 4 cut(s) 175, 541, 1148, 1342
HpyCH4III ACNGT 5 cut(s) 131, 651, 907, 946, 1082
HpyCH4IV ACGT 6 cut(s) 54, 549, 618, 1170, 1337, 1565
HpyCH4V TGCA 2 cut(s) 432, 1705
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 325, 606, 896, 1060, 1210
HpyF3I CTNAG 2 cut(s) 67, 710
HpySE526I ACGT 6 cut(s) 54, 549, 618, 1170, 1337, 1565
Hsp92I GRCGYC 5 cut(s) 477, 549, 588, 668, 1227
HspAI GCGC 3 cut(s) 477, 899, 1227
KasI GGCGCC 2 cut(s) 476, 1226
Kpn2I TCCGGA 1 cut(s) 973
Ksp22I TGATCA 4 cut(s) 303, 1354, 1465, 1527
KspAI GTTAAC 1 cut(s) 1069
KspI CCGCGG 1 cut(s) 475
LguI GCTCTTC 2 cut(s) 254, 721
Lsp1109I GCAGC 4 cut(s) 345, 411, 471, 1072
LweI GCATC 3 cut(s) 132, 441, 1654
MaeI CTAG 2 cut(s) 1572, 1673
MaeII ACGT 6 cut(s) 54, 549, 618, 1170, 1337, 1565
MaeIII GTNAC 2 cut(s) 907, 1298
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 5 cut(s) 426, 1113, 1133, 1167, 1418
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 6 cut(s) 745, 808, 871, 883, 977, 1138
MluI ACGCGT 2 cut(s) 639, 1514
MluNI TGGCCA 1 cut(s) 59
Mly113I GGCGCC 2 cut(s) 477, 1227
MlyI GAGTC 4 cut(s) 536, 789, 850, 1481
MmeI TCCRAC 7 cut(s) 570, 660, 705, 878, 1060, 1098, 1179
Mox20I TGGCCA 1 cut(s) 59
MroI TCCGGA 1 cut(s) 973
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 59
MseI TTAA 3 cut(s) 1068, 1398, 1717
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 358, 474
MvaI CCWGG 4 cut(s) 10, 257, 413, 785
MvnI CGCG 6 cut(s) 474, 570, 641, 1103, 1196, 1516
MwoI GCNNNNNNNGC 6 cut(s) 146, 325, 606, 896, 1060, 1210
NarI GGCGCC 2 cut(s) 477, 1227
NciI CCSGG 6 cut(s) 107, 506, 721, 919, 935, 962
NmeAIII GCCGAG 4 cut(s) 616, 652, 721, 1450
NmuCI GTSAC 1 cut(s) 1298
NspI RCATGY 1 cut(s) 1120
NspV TTCGAA 1 cut(s) 876
PaeR7I CTCGAG 1 cut(s) 293
PagI TCATGA 1 cut(s) 198
PciI ACATGT 1 cut(s) 1116
PciSI GCTCTTC 2 cut(s) 254, 721
PcsI WCGNNNNNNNCGW 5 cut(s) 291, 546, 567, 674, 819
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 5 cut(s) 351, 384, 724, 970, 1093
PfoI TCCNGGA 3 cut(s) 8, 504, 719
PleI GAGTC 4 cut(s) 536, 788, 850, 1480
PluTI GGCGCC 2 cut(s) 480, 1230
PpsI GAGTC 4 cut(s) 536, 788, 850, 1480
Ppu21I YACGTR 2 cut(s) 55, 1566
PpuMI RGGWCCY 1 cut(s) 1181
PscI ACATGT 1 cut(s) 1116
Psp124BI GAGCTC 3 cut(s) 1113, 1133, 1418
Psp5II RGGWCCY 1 cut(s) 1181
Psp6I CCWGG 4 cut(s) 8, 255, 411, 783
PspFI CCCAGC 1 cut(s) 1667
PspGI CCWGG 4 cut(s) 8, 255, 411, 783
PspPPI RGGWCCY 1 cut(s) 1181
PspXI VCTCGAGB 1 cut(s) 293
PsrI GAACNNNNNNTAC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 96
RsaI GTAC 7 cut(s) 53, 374, 443, 470, 830, 959, 1568
RsaNI GTAC 7 cut(s) 52, 373, 442, 469, 829, 958, 1567
Rsr2I CGGWCCG 1 cut(s) 1215
RsrII CGGWCCG 1 cut(s) 1215
SacI GAGCTC 3 cut(s) 1113, 1133, 1418
SacII CCGCGG 1 cut(s) 475
SalI GTCGAC 1 cut(s) 539
SapI GCTCTTC 2 cut(s) 254, 721
SaqAI TTAA 3 cut(s) 1068, 1398, 1717
SchI GAGTC 4 cut(s) 536, 789, 850, 1481
SduI GDGCHC 5 cut(s) 426, 1113, 1133, 1167, 1418
SfaNI GCATC 3 cut(s) 132, 441, 1654
SfoI GGCGCC 2 cut(s) 478, 1228
Sfr274I CTCGAG 1 cut(s) 293
Sfr303I CCGCGG 1 cut(s) 475
SfuI TTCGAA 1 cut(s) 876
SgrBI CCGCGG 1 cut(s) 475
SinI GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1181, 1215
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 6 cut(s) 745, 808, 871, 883, 977, 1138
SspDI GGCGCC 2 cut(s) 476, 1226
SspMI CTAG 2 cut(s) 1572, 1673
SstI GAGCTC 3 cut(s) 1113, 1133, 1418
StyI CCWWGG 1 cut(s) 1230
TaaI ACNGT 5 cut(s) 131, 651, 907, 946, 1082
TaiI ACGT 6 cut(s) 57, 552, 621, 1173, 1340, 1568
TaqI TCGA 8 cut(s) 294, 465, 540, 561, 579, 876, 1412, 1646
TaqII GACCGA 1 cut(s) 1571
TasI AATT 6 cut(s) 745, 808, 871, 883, 977, 1138
TatI WGTACW 1 cut(s) 828
TauI GCSGC 8 cut(s) 221, 477, 518, 570, 1057, 1060, 1196, 1482
TfiI GAWTC 5 cut(s) 351, 384, 724, 970, 1093
Tru1I TTAA 3 cut(s) 1068, 1398, 1717
Tru9I TTAA 3 cut(s) 1068, 1398, 1717
TscAI CASTG 2 cut(s) 434, 1426
TseFI GTSAC 1 cut(s) 1298
TseI GCWGC 4 cut(s) 358, 399, 484, 1060
Tsp45I GTSAC 1 cut(s) 1298
TspDTI ATGAA 3 cut(s) 163, 202, 215
TspGWI ACGGA 3 cut(s) 70, 300, 1703
TspRI CASTG 2 cut(s) 434, 1426
VpaK11BI GGWCC 7 cut(s) 109, 267, 409, 815, 851, 1181, 1215
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 2 cut(s) 883, 977
XceI RCATGY 1 cut(s) 1120
XcmI CCANNNNNNNNNTGG 1 cut(s) 1265
XhoI CTCGAG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 540
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 1572, 1673
ZraI GACGTC 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.