Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001891.1

Orthogroup ID

OG0002177

Physical Location & Seq

Genomic Coordinates Forward (+)

189560 .. 190009

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001891.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgctcttcgccttggccctctggaccaacttcagccgaaacagaagcctcaagtggatgatcacgattttctcgctctccacgcttcccaatactctggtcatgggaatcccgctgctgatcgccatgtacggccaccgaatcctggaggacatgacccagaaacctccagaaggattcagagccttattgagcatgatgatcgcaggtctccagaaggattcagagcctccagaaggtttctgggtcgttgatcagatcgaaggcttatttctctctttccacgacccatgcatggacgatctgtgtctagtggcatgtcggcgtcgtcgagaaaaacctaacgccagtagttcgccatcgtatcgttgccgggagatttctgatcgagttgcacgtttgggtcaaggggtcgtcgattgggtctcgaaggctctgaatccttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

8.43

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23080 AT1G23080 AT1G23080 AT1G23080 AT1G70940 AT2G01420 AT2G01420 AT2G01420
fragaria_vesca	FvH4_4g32450 FvH4_4g32450 FvH4_4g32450 FvH4_6g35590
malus_domestica	MD13G1025300.v1.1 MD16G1027900.v1.1
prunus_persica	Prupe.1G324900_v2.0.a1 Prupe.1G324900_v2.0.a1
pyrus_communis	pycom13g02370 pycom13g02380 pycom16g02380
rosa_chinensis	RchiOBHm_Chr4g0441311 RchiOBHm_Chr6g0249491
rosa_laevigata	RLG00000006103 RLG00000014076 RLG00000023177
rosa_multiflora	Rmu_co8277815.1_g000001 Rmu_co8310335.1_g000001 Rmu_sc0001891.1_g000054 Rmu_sc0003778.1_g000028 Rmu_sc0010320.1_g000001 Rmu_sc0012909.1_g000005 Rmu_sc0015560.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382190
rosa_rugosa	Rorug01G0483300 Rorug04G0332300
rosa_samantha	Rh3BG354500 Rh4AG384200 Rh4BG088700 Rh4BG167500 Rh4BG398300 Rh4CG413400 Rh4DG390900 Rh6AG118800
rosa_wichuraiana	Rw4G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AciI	CCGC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	4 cut(s)	145, 173, 236, 295
AjnI	CCWGG	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	215, 430
AoxI	GGCC	2 cut(s)	15, 133
ApeKI	GCWGC	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	16, 24
AsuC2I	CCSGG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	2 cut(s)	60, 253
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	215, 430
BfaI	CTAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	2 cut(s)	146, 374
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	16, 24
BmrFI	CCNGG	2 cut(s)	146, 374
BpmI	CTGGAG	4 cut(s)	153, 167, 197, 216
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	325
BsaI	GGTCTC	2 cut(s)	215, 430
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 173, 236, 295
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	4 cut(s)	145, 173, 236, 295
BseNI	ACTGG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	2 cut(s)	17, 135
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	4 cut(s)	145, 173, 236, 295
BsmAI	GTCTC	2 cut(s)	215, 430
BsnI	GGCC	2 cut(s)	17, 135
Bso31I	GGTCTC	2 cut(s)	215, 430
Bsp143I	GATC	7 cut(s)	60, 120, 201, 253, 258, 301, 385
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	2 cut(s)	17, 135
BspMI	ACCTGC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	11
BspTNI	GGTCTC	2 cut(s)	215, 430
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	7 cut(s)	60, 120, 201, 253, 258, 301, 385
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	325
BstENI	CCTNNNNNAGG	2 cut(s)	171, 234
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	7 cut(s)	63, 123, 204, 256, 261, 304, 388
BstMAI	GTCTC	2 cut(s)	215, 430
BstMBI	GATC	7 cut(s)	60, 120, 201, 253, 258, 301, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	144, 372
BstV1I	GCAGC	1 cut(s)	102
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	17, 135
BtsCI	GGATG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	16, 24
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	7 cut(s)	103, 127, 154, 196, 291, 295, 318
CviJI	RGCY	8 cut(s)	17, 36, 48, 135, 185, 229, 267, 434
CviKI_1	RGCY	8 cut(s)	17, 36, 48, 135, 185, 229, 267, 434
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	7 cut(s)	62, 122, 203, 255, 260, 303, 387
DpnII	GATC	7 cut(s)	60, 120, 201, 253, 258, 301, 385
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	2 cut(s)	215, 430
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	16
EcoNI	CCTNNNNNAGG	2 cut(s)	171, 234
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	7 cut(s)	106, 130, 157, 199, 294, 298, 321
FaiI	YATR	7 cut(s)	104, 128, 155, 197, 292, 296, 319
FatI	CATG	7 cut(s)	102, 126, 153, 195, 290, 294, 317
FauI	CCCGC	1 cut(s)	120
FbaI	TGATCA	2 cut(s)	60, 253
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	1 cut(s)	116
GsuI	CTGGAG	4 cut(s)	153, 167, 197, 216
HaeIII	GGCC	2 cut(s)	17, 135
HapII	CCGG	1 cut(s)	373
HgaI	GACGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	7 cut(s)	106, 130, 157, 199, 294, 298, 321
HinfI	GANTC	5 cut(s)	108, 141, 177, 221, 439
HpaII	CCGG	1 cut(s)	373
Hpy188I	TCNGA	5 cut(s)	182, 226, 258, 385, 438
Hpy188III	TCNNGA	8 cut(s)	22, 64, 170, 214, 233, 332, 427, 447
Hpy99I	CGWCG	3 cut(s)	330, 333, 419
HpyAV	CCTTC	5 cut(s)	167, 211, 230, 257, 424
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	2 cut(s)	294, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	7 cut(s)	106, 130, 157, 199, 294, 298, 321
Ksp22I	TGATCA	2 cut(s)	60, 253
Kzo9I	GATC	7 cut(s)	60, 120, 201, 253, 258, 301, 385
LguI	GCTCTTC	1 cut(s)	11
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	397
MalI	GATC	7 cut(s)	62, 122, 203, 255, 260, 303, 387
MboI	GATC	7 cut(s)	60, 120, 201, 253, 258, 301, 385
MnlI	CCTC	5 cut(s)	29, 59, 142, 177, 240
Mph1103I	ATGCAT	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	2 cut(s)	146, 374
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	7 cut(s)	60, 120, 201, 253, 258, 301, 385
NlaIII	CATG	7 cut(s)	106, 130, 157, 199, 294, 298, 321
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	2 cut(s)	328, 394
PfeI	GAWTC	5 cut(s)	108, 141, 177, 221, 439
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspPI	GGNCC	2 cut(s)	16, 24
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	7 cut(s)	60, 120, 201, 253, 258, 301, 385
Sau96I	GGNCC	2 cut(s)	16, 24
ScrFI	CCNGG	2 cut(s)	146, 374
SetI	ASST	5 cut(s)	169, 211, 241, 343, 400
SinI	GGWCC	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	2 cut(s)	144, 372
StyI	CCWWGG	1 cut(s)	12
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	5 cut(s)	261, 331, 388, 417, 428
TfiI	GAWTC	5 cut(s)	108, 141, 177, 221, 439
TseI	GCWGC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	24
XagI	CCTNNNNNAGG	2 cut(s)	171, 234
XceI	RCATGY	1 cut(s)	321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	240
XspI	CTAG	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.