Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002177

Physical Location & Seq

Genomic Coordinates Forward (+)

1633784 .. 1635740

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCTATGTTCAGCTTAGGTCTTTTCATGGCACTTCAGCCCAAGATAATAGCCTGTGGGAACTCAGTTGCCGGATTTGCAATGGCAGTAAGGTTCCTCACTGGCCCCGCCGTCATGGCTGCCGCCTCCATTGCTGTTGGCCTCCGTGGCACCCTCCTCCACTTAGCTATTGTCCAGGCTGCTCTTCCTCAAGGAATTGTTCCCTTTGTATTTGCCAAGGAGTACAATGTTCATCCAGCCATTCTTAGCACTGCGGTTATTTTCGGAATGTTGATAGCTTTGCCAATTACTTTGGTCTACTACATTCTTCTGGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

107

Amino Acids

11.07

Weight (kDa)

9.51

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23080 AT1G23080 AT1G23080 AT1G23080 AT1G70940 AT2G01420 AT2G01420 AT2G01420
fragaria_vesca	FvH4_4g32450 FvH4_4g32450 FvH4_4g32450 FvH4_6g35590
malus_domestica	MD13G1025300.v1.1 MD16G1027900.v1.1
prunus_persica	Prupe.1G324900_v2.0.a1 Prupe.1G324900_v2.0.a1
pyrus_communis	pycom13g02370 pycom13g02380 pycom16g02380
rosa_chinensis	RchiOBHm_Chr4g0441311 RchiOBHm_Chr6g0249491
rosa_laevigata	RLG00000006103 RLG00000014076 RLG00000023177
rosa_multiflora	Rmu_co8277815.1_g000001 Rmu_co8310335.1_g000001 Rmu_sc0001891.1_g000054 Rmu_sc0003778.1_g000028 Rmu_sc0010320.1_g000001 Rmu_sc0012909.1_g000005 Rmu_sc0015560.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382190
rosa_rugosa	Rorug01G0483300 Rorug04G0332300
rosa_samantha	Rh3BG354500 Rh4AG384200 Rh4BG088700 Rh4BG167500 Rh4BG398300 Rh4CG413400 Rh4DG390900 Rh6AG118800
rosa_wichuraiana	Rw4G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	3 cut(s)	108, 123, 254
AcuI	CTGAAG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	3 cut(s)	15, 167, 278
AluI	AGCT	3 cut(s)	15, 167, 278
AoxI	GGCC	2 cut(s)	103, 139
ApeKI	GCWGC	2 cut(s)	119, 179
AspS9I	GGNCC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	106, 166
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	176
BglI	GCCNNNNNGGC	2 cut(s)	116, 147
BisI	GCNGC	3 cut(s)	120, 123, 180
BlsI	GCNGC	3 cut(s)	121, 124, 181
Bme1390I	CCNGG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	95, 106, 151
BmrFI	CCNGG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	145, 216
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	2 cut(s)	87, 129
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	145, 216
BseGI	GGATG	1 cut(s)	232
BseMI	GCAATG	2 cut(s)	87, 129
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	106, 166
BshFI	GGCC	2 cut(s)	105, 141
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	72
BsnI	GGCC	2 cut(s)	105, 141
BspACI	CCGC	3 cut(s)	108, 123, 254
BspANI	GGCC	2 cut(s)	105, 141
BspCNI	CTCAG	1 cut(s)	77
BspLI	GGNNCC	3 cut(s)	95, 106, 151
BspQI	GCTCTTC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	87, 129
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	145, 216
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	189
BstDEI	CTNAG	4 cut(s)	16, 64, 163, 245
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 116, 131, 147
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	106, 166
BsuRI	GGCC	2 cut(s)	105, 141
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	99, 249
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	28, 115
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	4 cut(s)	16, 64, 163, 245
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	31, 118
FaiI	YATR	3 cut(s)	8, 29, 116
FatI	CATG	2 cut(s)	27, 114
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	120, 123, 180
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	3 cut(s)	120, 123, 180
GluI	GCNGC	3 cut(s)	120, 123, 180
HaeIII	GGCC	2 cut(s)	105, 141
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	31, 118
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	298
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 116, 131, 147
HpyF3I	CTNAG	4 cut(s)	16, 64, 163, 245
Hsp92II	CATG	2 cut(s)	31, 118
LguI	GCTCTTC	1 cut(s)	189
LpnPI	CCDG	7 cut(s)	67, 85, 87, 161, 188, 249, 296
Lsp1109I	GCAGC	2 cut(s)	106, 166
MboII	GAAGA	2 cut(s)	176, 299
MluCI	AATT	2 cut(s)	195, 285
MnlI	CCTC	6 cut(s)	107, 136, 152, 164, 167, 198
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	4 cut(s)	77, 116, 131, 147
NlaIII	CATG	2 cut(s)	31, 118
NlaIV	GGNNCC	3 cut(s)	95, 106, 151
PciSI	GCTCTTC	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	121, 124, 181
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	95, 106, 151
PspPI	GGNCC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	189
SatI	GCNGC	3 cut(s)	120, 123, 180
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	5 cut(s)	17, 22, 95, 169, 280
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	2 cut(s)	195, 285
SsiI	CCGC	3 cut(s)	108, 123, 254
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	216
TasI	AATT	2 cut(s)	195, 285
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	125
TscAI	CASTG	2 cut(s)	106, 256
TseI	GCWGC	2 cut(s)	119, 179
TspDTI	ATGAA	2 cut(s)	16, 221
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	106, 256
XmiI	GTMKAC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.