Rmu_co8277815.1_g000001

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8277815.1
OG0002177
Physical Location & Seq
Forward (+)
1 .. 533
533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8277815.1_g000001.1.cds

Sequence Viewer

Length: 450 bp
aataaatgtgcagtggcggttgcggagagtgacggcgatcactaccaccacggcggagaagccttcacgttcaccggaaaggttgatcagggagaggaggagagagaaaaggaggggccaaccggacttaacaagcaggggtcaagctcgactgccgagctacacgggaaaggaggagcaggagtactgggggttgatcacgagtcaagcggcggaaaacaaatgcctccggcgagcgttatgacgcgtctgatcttgatcatggtttggcggaagcttatccgcaatcccaacacgtactctagcctcatcggtctcatctggtcgctcatcgctttccggtggggtattgctatgccaaaaataatagagaagtcgatctccattctgtccgatgctgggctaggaatggctatgttcagtttaggtaagttgcatttcctccgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

149

Amino Acids

16.04

Weight (kDa)

8.09

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 247
AciI CCGC 7 cut(s) 17, 23, 54, 210, 213, 271, 283
AfaI GTAC 2 cut(s) 186, 299
AfiI CCNNNNNNNGG 1 cut(s) 399
AflIII ACRYGT 2 cut(s) 245, 294
AluBI AGCT 3 cut(s) 147, 160, 277
AluI AGCT 3 cut(s) 147, 160, 277
Alw26I GTCTC 1 cut(s) 320
AoxI GGCC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 64
BauI CACGAG 1 cut(s) 200
BceAI ACGGC 2 cut(s) 49, 67
BclI TGATCA 3 cut(s) 85, 196, 258
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 2 cut(s) 303, 404
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
BmcAI AGTACT 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 3 cut(s) 74, 122, 339
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 49
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 3 cut(s) 110, 113, 189
BseYI CCCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 118
BsiSI CCGG 4 cut(s) 75, 123, 230, 340
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 320
Bsp143I GATC 6 cut(s) 37, 85, 196, 252, 258, 378
BspACI CCGC 7 cut(s) 17, 23, 54, 210, 213, 271, 283
BspANI GGCC 1 cut(s) 118
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 320
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 6 cut(s) 37, 85, 196, 252, 258, 378
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 247
BstKTI GATC 6 cut(s) 40, 88, 199, 255, 261, 381
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 6 cut(s) 37, 85, 196, 252, 258, 378
BstUI CGCG 1 cut(s) 247
BsuRI GGCC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 2 cut(s) 236, 253
Csp6I GTAC 2 cut(s) 185, 298
CviAII CATG 1 cut(s) 262
CviJI RGCY 8 cut(s) 62, 118, 147, 160, 277, 306, 403, 413
CviKI_1 RGCY 8 cut(s) 62, 118, 147, 160, 277, 306, 403, 413
CviQI GTAC 2 cut(s) 185, 298
DpnI GATC 6 cut(s) 39, 87, 198, 254, 260, 380
DpnII GATC 6 cut(s) 37, 85, 196, 252, 258, 378
EciI GGCGGA 3 cut(s) 69, 228, 286
Eco31I GGTCTC 1 cut(s) 320
FaeI CATG 1 cut(s) 265
FaiI YATR 4 cut(s) 242, 263, 356, 416
FatI CATG 1 cut(s) 261
FbaI TGATCA 3 cut(s) 85, 196, 258
Fnu4HI GCNGC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 2 cut(s) 303, 404
GluI GCNGC 1 cut(s) 211
GsaI CCCAGC 1 cut(s) 402
HaeIII GGCC 1 cut(s) 118
HapII CCGG 4 cut(s) 75, 123, 230, 340
HgaI GACGC 2 cut(s) 236, 253
Hin1II CATG 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 203
HpaII CCGG 4 cut(s) 75, 123, 230, 340
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 252, 394
Hpy188III TCNNGA 2 cut(s) 200, 256
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 73
HpyCH4IV ACGT 2 cut(s) 68, 296
HpyCH4V TGCA 2 cut(s) 11, 436
HpySE526I ACGT 2 cut(s) 68, 296
Hsp92II CATG 1 cut(s) 265
Ksp22I TGATCA 3 cut(s) 85, 196, 258
Kzo9I GATC 6 cut(s) 37, 85, 196, 252, 258, 378
LmnI GCTCC 1 cut(s) 176
LweI GCATC 1 cut(s) 385
MaeI CTAG 2 cut(s) 303, 404
MaeII ACGT 2 cut(s) 68, 296
MaeIII GTNAC 1 cut(s) 29
MalI GATC 6 cut(s) 39, 87, 198, 254, 260, 380
MboI GATC 6 cut(s) 37, 85, 196, 252, 258, 378
MluI ACGCGT 1 cut(s) 245
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 6 cut(s) 88, 91, 106, 167, 237, 317
MseI TTAA 2 cut(s) 129, 448
MspI CCGG 4 cut(s) 75, 123, 230, 340
MvnI CGCG 1 cut(s) 247
NdeII GATC 6 cut(s) 37, 85, 196, 252, 258, 378
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 212
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 116
RsaI GTAC 2 cut(s) 186, 299
RsaNI GTAC 2 cut(s) 185, 298
SaqAI TTAA 2 cut(s) 129, 448
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 6 cut(s) 37, 85, 196, 252, 258, 378
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 1 cut(s) 212
SetI ASST 7 cut(s) 71, 84, 149, 162, 279, 299, 430
SfaNI GCATC 1 cut(s) 385
SsiI CCGC 7 cut(s) 17, 23, 54, 210, 213, 271, 283
SspMI CTAG 2 cut(s) 303, 404
TaiI ACGT 2 cut(s) 71, 299
TaqI TCGA 2 cut(s) 149, 377
TaqII GACCGA 1 cut(s) 302
TatI WGTACW 1 cut(s) 184
TauI GCSGC 1 cut(s) 213
Tru1I TTAA 2 cut(s) 129, 448
Tru9I TTAA 2 cut(s) 129, 448
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 18
XspI CTAG 2 cut(s) 303, 404
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.