Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010320.1

Orthogroup ID

OG0002177

Physical Location & Seq

Genomic Coordinates Forward (+)

387 .. 680

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010320.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgatcacgattttctcgctctccactcttcccaatactctggtcaagggaatcccactgctgatagccatgtactaccagcgaatcccagagtccggcaacctgatggtccaggtcgtcgtgctccagtgcatcatttggtacactctgttactcttcctcttcgagtaccgcggcgccaagctgctcgtaatggagcagttcccggagatcgccgcctccatcatctccttcaaggtcgactccgacgtcatgttcctcgacagccgcgacttcctcaaaaccgacgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

97

Amino Acids

11.11

Weight (kDa)

4.81

Isoelectric Point (pI)

18.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23080 AT1G23080 AT1G23080 AT1G23080 AT1G70940 AT2G01420 AT2G01420 AT2G01420
fragaria_vesca	FvH4_4g32450 FvH4_4g32450 FvH4_4g32450 FvH4_6g35590
malus_domestica	MD13G1025300.v1.1 MD16G1027900.v1.1
prunus_persica	Prupe.1G324900_v2.0.a1 Prupe.1G324900_v2.0.a1
pyrus_communis	pycom13g02370 pycom13g02380 pycom16g02380
rosa_chinensis	RchiOBHm_Chr4g0441311 RchiOBHm_Chr6g0249491
rosa_laevigata	RLG00000006103 RLG00000014076 RLG00000023177
rosa_multiflora	Rmu_co8277815.1_g000001 Rmu_co8310335.1_g000001 Rmu_sc0001891.1_g000054 Rmu_sc0003778.1_g000028 Rmu_sc0010320.1_g000001 Rmu_sc0012909.1_g000005 Rmu_sc0015560.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382190
rosa_rugosa	Rorug01G0483300 Rorug04G0332300
rosa_samantha	Rh3BG354500 Rh4AG384200 Rh4BG088700 Rh4BG167500 Rh4BG398300 Rh4CG413400 Rh4DG390900 Rh6AG118800
rosa_wichuraiana	Rw4G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AatII	GACGTC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	2 cut(s)	174, 270
AciI	CCGC	4 cut(s)	172, 174, 216, 268
AcyI	GRCGYC	3 cut(s)	177, 249, 288
AfaI	GTAC	3 cut(s)	74, 143, 170
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw21I	GWGCWC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	100, 230
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	206
BfaI	CTAG	1 cut(s)	292
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	4 cut(s)	175, 185, 216, 268
BlsI	GCNGC	4 cut(s)	176, 186, 217, 269
Bme1390I	CCNGG	2 cut(s)	113, 206
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	113, 206
BmsI	GCATC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	206
BsaHI	GRCGYC	3 cut(s)	177, 249, 288
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	171
Bsh1236I	CGCG	2 cut(s)	174, 270
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	96, 206
BslI	CCNNNNNNNGG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	3, 210
BspACI	CCGC	4 cut(s)	172, 174, 216, 268
BspFNI	CGCG	2 cut(s)	174, 270
BspLI	GGNNCC	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	2 cut(s)	3, 210
BssNI	GRCGYC	3 cut(s)	177, 249, 288
Bst2UI	CCWGG	1 cut(s)	113
Bst6I	CTCTTC	3 cut(s)	33, 161, 167
BstACI	GRCGYC	3 cut(s)	177, 249, 288
BstDSI	CCRYGG	1 cut(s)	172
BstFNI	CGCG	2 cut(s)	174, 270
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	6, 213
BstMBI	GATC	2 cut(s)	3, 210
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	111, 204
BstUI	CGCG	2 cut(s)	174, 270
BstV1I	GCAGC	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	2 cut(s)	56, 134
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	109
Cfr42I	CCGCGG	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	73, 142, 169
CviAII	CATG	2 cut(s)	70, 253
CviJI	RGCY	3 cut(s)	68, 184, 267
CviKI_1	RGCY	3 cut(s)	68, 184, 267
CviQI	GTAC	3 cut(s)	73, 142, 169
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	2 cut(s)	5, 212
DpnII	GATC	2 cut(s)	3, 210
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	3 cut(s)	33, 161, 167
EarI	CTCTTC	3 cut(s)	33, 161, 167
Eco47I	GGWCC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
FaeI	CATG	2 cut(s)	73, 256
FaiI	YATR	2 cut(s)	71, 254
FatI	CATG	2 cut(s)	69, 252
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	4 cut(s)	175, 185, 216, 268
Fsp4HI	GCNGC	4 cut(s)	175, 185, 216, 268
FspBI	CTAG	1 cut(s)	292
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	175, 185, 216, 268
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	180
HapII	CCGG	2 cut(s)	96, 206
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	3 cut(s)	177, 249, 288
Hin1II	CATG	2 cut(s)	73, 256
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	4 cut(s)	51, 84, 92, 242
HpaII	CCGG	2 cut(s)	96, 206
Hpy166II	GTNNAC	2 cut(s)	144, 241
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	2 cut(s)	144, 241
Hpy99I	CGWCG	3 cut(s)	122, 251, 290
HpyAV	CCTTC	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	3 cut(s)	177, 249, 288
Hsp92II	CATG	2 cut(s)	73, 256
HspAI	GCGC	1 cut(s)	177
KasI	GGCGCC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	3
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	3, 210
LmnI	GCTCC	2 cut(s)	129, 196
LpnPI	CCDG	9 cut(s)	26, 92, 98, 102, 109, 116, 125, 140, 219
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	292
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	2 cut(s)	5, 212
MboI	GATC	2 cut(s)	3, 210
MboII	GAAGA	3 cut(s)	20, 148, 154
MhlI	GDGCHC	1 cut(s)	126
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	2 cut(s)	101, 236
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	170, 229, 269, 287
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	2 cut(s)	96, 206
MspR9I	CCNGG	2 cut(s)	113, 206
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	174, 270
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	3, 210
NlaIII	CATG	2 cut(s)	73, 256
NlaIV	GGNNCC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 267
PfeI	GAWTC	2 cut(s)	51, 84
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	4 cut(s)	176, 186, 217, 269
PleI	GAGTC	2 cut(s)	100, 236
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	2 cut(s)	100, 236
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	3 cut(s)	74, 143, 170
RsaNI	GTAC	3 cut(s)	73, 142, 169
SacII	CCGCGG	1 cut(s)	175
SalI	GTCGAC	1 cut(s)	239
SatI	GCNGC	4 cut(s)	175, 185, 216, 268
Sau3AI	GATC	2 cut(s)	3, 210
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	101, 236
ScrFI	CCNGG	2 cut(s)	113, 206
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	105, 117, 186, 240, 252
SfaNI	GCATC	1 cut(s)	141
SfoI	GGCGCC	1 cut(s)	178
Sfr303I	CCGCGG	1 cut(s)	175
SgrBI	CCGCGG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	109
SsiI	CCGC	4 cut(s)	172, 174, 216, 268
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	111, 204
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	165, 240, 261
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	3 cut(s)	177, 218, 270
TfiI	GAWTC	2 cut(s)	51, 84
TscAI	CASTG	2 cut(s)	63, 134
TseI	GCWGC	1 cut(s)	184
TspRI	CASTG	2 cut(s)	63, 134
VpaK11BI	GGWCC	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	292
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.