Rh4BG088700

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002177
Physical Location & Seq
Forward (+)
15319531 .. 15320160
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG088700.1

Sequence Viewer

Length: 630 bp
ATGATCTTAGCTTACGGCTCCGTCCGGTGGTGGAAGATCTTCTCCCCGGATCAATGCTCCGGAATCAACCGCTTCGTCGTAGTTCCTCTTCTCTCCTTCCACTTCATCTCCACCAACAACCCATACACCATGAACTTCCGCTTCATCGCTGCCGACACTCTCCATAAGATCATCATGCTCTTCGACCTGGCCCTCTGGACCAACTTCACCGGAAACGGAAGCCTCGAGTGGATGATCACGATTTTCTCGTTCTCCACGCTTCCCAATACTCTGGTCATGGGAATCCCGCTGCTGATTGCCATGTACGGCCACCGAATCCCGGAGTCCGGCAGCCTGATGGTCCAGGTCGTCGTGCTCCAGTGCATCATTCGGTACACTCTGTTACTCTTCCTCTTCGAGTACCGCGGCGCCAAGCTGCTGATAATGGAGCAGTTCCCGGAGACCGCGGCCTCCATCGTCTCCTTCAAGGTCGACTCCGACGTCATGTCCCTCGACGGCCGCGACTTCCTAGAAACCGACGCCGAGTTCGGCGACGACGGCAAACTCCACATCAAGGTGAGGAAGTCCAACGCGTCCAGACGGTCGCTCCCGGCAATGATGCCTCGCCCGTCCAACCTCACCGGAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

209

Amino Acids

23.67

Weight (kDa)

7.81

Isoelectric Point (pI)

24.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 1 - 188 4.6e-51 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 479
AatII GACGTC 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 471
AccII CGCG 4 cut(s) 405, 446, 501, 572
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 8 cut(s) 70, 139, 287, 403, 405, 444, 446, 499
AclWI GGATC 1 cut(s) 57
AcoI YGGCCR 2 cut(s) 307, 496
AcyI GRCGYC 3 cut(s) 408, 480, 519
AfaI GTAC 3 cut(s) 305, 374, 401
AfiI CCNNNNNNNGG 4 cut(s) 27, 319, 326, 553
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 1 cut(s) 466
AhdI GACNNNNNGTC 1 cut(s) 484
AjnI CCWGG 2 cut(s) 186, 342
AluBI AGCT 2 cut(s) 11, 415
AluI AGCT 2 cut(s) 11, 415
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 434, 463
AlwI GGATC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 224
Aor13HI TCCGGA 1 cut(s) 59
AoxI GGCC 4 cut(s) 189, 307, 447, 496
ApeKI GCWGC 4 cut(s) 149, 289, 330, 415
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 3 cut(s) 190, 198, 340
AsuC2I CCSGG 4 cut(s) 47, 320, 437, 590
AsuHPI GGTGA 3 cut(s) 199, 568, 610
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 2 cut(s) 198, 340
BanI GGYRCC 1 cut(s) 407
BarI GAAGNNNNNNTAC 2 cut(s) 72, 104
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 4 cut(s) 136, 276, 342, 402
BccI CCATC 2 cut(s) 331, 461
BceAI ACGGC 4 cut(s) 31, 322, 511, 553
BciT130I CCWGG 2 cut(s) 188, 344
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 4 cut(s) 47, 320, 437, 590
BcoDI GTCTC 2 cut(s) 434, 463
BfaI CTAG 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 411
BglII AGATCT 1 cut(s) 36
BisI GCNGC 7 cut(s) 150, 290, 331, 406, 416, 447, 499
BlsI GCNGC 7 cut(s) 151, 291, 332, 407, 417, 448, 500
Bme1390I CCNGG 6 cut(s) 47, 188, 320, 344, 437, 590
Bme18I GGWCC 2 cut(s) 198, 340
BmeRI GACNNNNNGTC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 190, 198, 340
BmiI GGNNCC 2 cut(s) 19, 409
BmrFI CCNGG 6 cut(s) 47, 188, 320, 344, 437, 590
BmsI GCATC 2 cut(s) 372, 588
BpmI CTGGAG 1 cut(s) 341
BpuMI CCSGG 4 cut(s) 47, 320, 437, 590
BsaHI GRCGYC 3 cut(s) 408, 480, 519
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 45, 403, 444
BsaWI WCCGGW 4 cut(s) 24, 59, 209, 620
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 570, 600
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 319, 326, 553
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 1 cut(s) 600
BseAI TCCGGA 1 cut(s) 59
BseBI CCWGG 2 cut(s) 188, 344
BseDI CCNNGG 3 cut(s) 45, 403, 444
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 4 cut(s) 27, 319, 326, 553
BseMI GCAATG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 358
BseX3I CGGCCG 1 cut(s) 496
BseXI GCAGC 4 cut(s) 136, 276, 342, 402
Bsh1236I CGCG 4 cut(s) 405, 446, 501, 572
Bsh1285I CGRYCG 2 cut(s) 499, 584
BshFI GGCC 4 cut(s) 191, 309, 449, 498
BshNI GGYRCC 1 cut(s) 407
BsiEI CGRYCG 2 cut(s) 499, 584
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 9 cut(s) 25, 47, 60, 210, 320, 327, 437, 590, 621
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 4 cut(s) 27, 319, 326, 553
BsmAI GTCTC 2 cut(s) 434, 463
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 4 cut(s) 191, 309, 449, 498
Bso31I GGTCTC 1 cut(s) 434
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 357
Bsp13I TCCGGA 1 cut(s) 59
Bsp143I GATC 5 cut(s) 3, 36, 49, 168, 234
BspACI CCGC 8 cut(s) 70, 139, 287, 403, 405, 444, 446, 499
BspANI GGCC 4 cut(s) 191, 309, 449, 498
BspEI TCCGGA 1 cut(s) 59
BspFNI CGCG 4 cut(s) 405, 446, 501, 572
BspLI GGNNCC 2 cut(s) 19, 409
BspPI GGATC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 45, 403, 444
BssMI GATC 5 cut(s) 3, 36, 49, 168, 234
BssNI GRCGYC 3 cut(s) 408, 480, 519
Bst2UI CCWGG 2 cut(s) 188, 344
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 4 cut(s) 93, 185, 392, 398
BstACI GRCGYC 3 cut(s) 408, 480, 519
BstDEI CTNAG 1 cut(s) 7
BstDSI CCRYGG 2 cut(s) 403, 444
BstF5I GGATG 1 cut(s) 237
BstFNI CGCG 4 cut(s) 405, 446, 501, 572
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 5 cut(s) 6, 39, 52, 171, 237
BstMAI GTCTC 2 cut(s) 434, 463
BstMBI GATC 5 cut(s) 3, 36, 49, 168, 234
BstMCI CGRYCG 2 cut(s) 499, 584
BstMWI GCNNNNNNNGC 1 cut(s) 537
BstNI CCWGG 2 cut(s) 188, 344
BstSCI CCNGG 6 cut(s) 45, 186, 318, 342, 435, 588
BstUI CGCG 4 cut(s) 405, 446, 501, 572
BstV1I GCAGC 4 cut(s) 136, 276, 342, 402
BstX2I RGATCY 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 496
BsuRI GGCC 4 cut(s) 191, 309, 449, 498
BtgI CCRYGG 2 cut(s) 403, 444
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 365
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 190, 198, 340
Cfr42I CCGCGG 2 cut(s) 406, 447
CseI GACGC 2 cut(s) 527, 561
Csp6I GTAC 3 cut(s) 304, 373, 400
CviAII CATG 5 cut(s) 130, 175, 277, 301, 484
CviJI RGCY 9 cut(s) 11, 18, 191, 222, 309, 333, 415, 449, 498
CviKI_1 RGCY 9 cut(s) 11, 18, 191, 222, 309, 333, 415, 449, 498
CviQI GTAC 3 cut(s) 304, 373, 400
DdeI CTNAG 1 cut(s) 7
DinI GGCGCC 1 cut(s) 409
DpnI GATC 5 cut(s) 5, 38, 51, 170, 236
DpnII GATC 5 cut(s) 3, 36, 49, 168, 234
DrdI GACNNNNNNGTC 1 cut(s) 479
DriI GACNNNNNGTC 1 cut(s) 484
DseDI GACNNNNNNGTC 1 cut(s) 479
EaeI YGGCCR 2 cut(s) 307, 496
EagI CGGCCG 1 cut(s) 496
Eam1104I CTCTTC 4 cut(s) 93, 185, 392, 398
Eam1105I GACNNNNNGTC 1 cut(s) 484
EarI CTCTTC 4 cut(s) 93, 185, 392, 398
EclXI CGGCCG 1 cut(s) 496
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 198, 340
Eco52I CGGCCG 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 186, 342
EgeI GGCGCC 1 cut(s) 409
EheI GGCGCC 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 5 cut(s) 133, 178, 280, 304, 487
FaiI YATR 7 cut(s) 124, 131, 165, 176, 278, 302, 485
FaqI GGGAC 1 cut(s) 472
FatI CATG 5 cut(s) 129, 174, 276, 300, 483
FauI CCCGC 1 cut(s) 294
FbaI TGATCA 1 cut(s) 234
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 7 cut(s) 150, 290, 331, 406, 416, 447, 499
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 7 cut(s) 150, 290, 331, 406, 416, 447, 499
FspBI CTAG 1 cut(s) 509
GlaI GCGC 1 cut(s) 409
GluI GCNGC 7 cut(s) 150, 290, 331, 406, 416, 447, 499
GsuI CTGGAG 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 4 cut(s) 191, 309, 449, 498
HapII CCGG 9 cut(s) 25, 47, 60, 210, 320, 327, 437, 590, 621
HgaI GACGC 2 cut(s) 527, 561
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 3 cut(s) 408, 480, 519
Hin1II CATG 5 cut(s) 133, 178, 280, 304, 487
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 5 cut(s) 63, 282, 315, 323, 473
HpaII CCGG 9 cut(s) 25, 47, 60, 210, 320, 327, 437, 590, 621
HphI GGTGA 3 cut(s) 199, 568, 610
Hpy166II GTNNAC 2 cut(s) 375, 472
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 4 cut(s) 60, 196, 238, 576
Hpy8I GTNNAC 2 cut(s) 375, 472
Hpy99I CGWCG 7 cut(s) 80, 353, 482, 497, 521, 536, 539
HpyAV CCTTC 2 cut(s) 106, 472
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 537
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 1 cut(s) 480
Hsp92I GRCGYC 3 cut(s) 408, 480, 519
Hsp92II CATG 5 cut(s) 133, 178, 280, 304, 487
HspAI GCGC 1 cut(s) 408
KasI GGCGCC 1 cut(s) 407
Kpn2I TCCGGA 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 234
KspI CCGCGG 2 cut(s) 406, 447
Kzo9I GATC 5 cut(s) 3, 36, 49, 168, 234
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 6 cut(s) 23, 62, 360, 427, 591, 623
Lsp1109I GCAGC 4 cut(s) 136, 276, 342, 402
LweI GCATC 2 cut(s) 372, 588
MaeI CTAG 1 cut(s) 509
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 381
MalI GATC 5 cut(s) 5, 38, 51, 170, 236
MboI GATC 5 cut(s) 3, 36, 49, 168, 234
MboII GAAGA 6 cut(s) 31, 46, 80, 172, 379, 385
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 357
MluI ACGCGT 1 cut(s) 570
Mly113I GGCGCC 1 cut(s) 408
MlyI GAGTC 2 cut(s) 332, 467
MmeI TCCRAC 2 cut(s) 501, 591
MnlI CCTC 9 cut(s) 96, 203, 233, 401, 460, 500, 552, 612, 626
MroI TCCGGA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 554
MspA1I CMGCKG 3 cut(s) 289, 405, 446
MspI CCGG 9 cut(s) 25, 47, 60, 210, 320, 327, 437, 590, 621
MspR9I CCNGG 6 cut(s) 47, 188, 320, 344, 437, 590
MvaI CCWGG 2 cut(s) 188, 344
MvnI CGCG 4 cut(s) 405, 446, 501, 572
MwoI GCNNNNNNNGC 1 cut(s) 537
NarI GGCGCC 1 cut(s) 408
NciI CCSGG 4 cut(s) 47, 320, 437, 590
NdeII GATC 5 cut(s) 3, 36, 49, 168, 234
NlaIII CATG 5 cut(s) 133, 178, 280, 304, 487
NlaIV GGNNCC 2 cut(s) 19, 409
NmeAIII GCCGAG 1 cut(s) 547
PaeR7I CTCGAG 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 4 cut(s) 222, 245, 477, 498
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 3 cut(s) 63, 282, 315
PfoI TCCNGGA 2 cut(s) 318, 435
PkrI GCNGC 7 cut(s) 151, 291, 332, 407, 417, 448, 500
PleI GAGTC 2 cut(s) 331, 467
PluTI GGCGCC 1 cut(s) 411
PpsI GAGTC 2 cut(s) 331, 467
Psp6I CCWGG 2 cut(s) 186, 342
PspGI CCWGG 2 cut(s) 186, 342
PspN4I GGNNCC 2 cut(s) 19, 409
PspPI GGNCC 3 cut(s) 190, 198, 340
PspXI VCTCGAGB 1 cut(s) 224
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 3 cut(s) 305, 374, 401
RsaNI GTAC 3 cut(s) 304, 373, 400
RseI CAYNNNNRTG 1 cut(s) 554
SacII CCGCGG 2 cut(s) 406, 447
SalI GTCGAC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 185
SatI GCNGC 7 cut(s) 150, 290, 331, 406, 416, 447, 499
Sau3AI GATC 5 cut(s) 3, 36, 49, 168, 234
Sau96I GGNCC 3 cut(s) 190, 198, 340
SchI GAGTC 2 cut(s) 332, 467
ScrFI CCNGG 6 cut(s) 47, 188, 320, 344, 437, 590
SduI GDGCHC 1 cut(s) 357
SetI ASST 8 cut(s) 13, 189, 348, 417, 471, 483, 558, 618
SfaNI GCATC 2 cut(s) 372, 588
SfoI GGCGCC 1 cut(s) 409
Sfr274I CTCGAG 1 cut(s) 224
Sfr303I CCGCGG 2 cut(s) 406, 447
SgrBI CCGCGG 2 cut(s) 406, 447
SinI GGWCC 2 cut(s) 198, 340
SlaI CTCGAG 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SsiI CCGC 8 cut(s) 70, 139, 287, 403, 405, 444, 446, 499
SspDI GGCGCC 1 cut(s) 407
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 6 cut(s) 45, 186, 318, 342, 435, 588
TaaI ACNGT 1 cut(s) 582
TaiI ACGT 1 cut(s) 483
TaqI TCGA 5 cut(s) 183, 225, 396, 471, 492
TauI GCSGC 3 cut(s) 408, 449, 501
TfiI GAWTC 3 cut(s) 63, 282, 315
TscAI CASTG 1 cut(s) 365
TseI GCWGC 4 cut(s) 149, 289, 330, 415
TspDTI ATGAA 3 cut(s) 94, 133, 146
TspGWI ACGGA 2 cut(s) 10, 231
TspRI CASTG 1 cut(s) 365
VpaK11BI GGWCC 2 cut(s) 198, 340
XhoI CTCGAG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 471
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 509
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.