Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8310335.1

Orthogroup ID

OG0002177

Physical Location & Seq

Genomic Coordinates Forward (+)

447 .. 918

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8310335.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 472 bp

atgatcagcggaaaggacatttacgaggtccttgcaagtattgtgccgctttacgtggccatgatcttggcctacggctcggtccggtggtggaagatcttcaccccggaccagtgctccggcatcaaccgcttcgtggcggtttttgcagttcctttgctttcatttcacttcatttcttccaacgatccctacgccatggactaccagttcatcgcggcggactcgttgcagaaagtggtgattcttgtggctctattcctctggcagaccttctccaagcgtggcaacctcgagtggatgatcacgctcttctccctctccactctccccaacactctcgtcatggggattcctctcttgaaagccatgtacggcgacttttcaggcgctctcatggttcaaatcgtggtgctgcagagcgtcatctggtacactctcatgctcttcatgttcgagtacagaggagcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001666 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0006810 GO:0006950 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009743 GO:0009746 GO:0009749 GO:0009914 GO:0009921 GO:0009925 GO:0009926 GO:0009958 GO:0009966 GO:0010033 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0016323 GO:0022857 GO:0023051 GO:0032991 GO:0034284 GO:0036293 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045178 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0070482 GO:0071944 GO:0080161 GO:0098590 GO:0098796 GO:0098797 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

157

Amino Acids

17.86

Weight (kDa)

6.53

Isoelectric Point (pI)

23.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23080 AT1G23080 AT1G23080 AT1G23080 AT1G70940 AT2G01420 AT2G01420 AT2G01420
fragaria_vesca	FvH4_4g32450 FvH4_4g32450 FvH4_4g32450 FvH4_6g35590
malus_domestica	MD13G1025300.v1.1 MD16G1027900.v1.1
prunus_persica	Prupe.1G324900_v2.0.a1 Prupe.1G324900_v2.0.a1
pyrus_communis	pycom13g02370 pycom13g02380 pycom16g02380
rosa_chinensis	RchiOBHm_Chr4g0441311 RchiOBHm_Chr6g0249491
rosa_laevigata	RLG00000006103 RLG00000014076 RLG00000023177
rosa_multiflora	Rmu_co8277815.1_g000001 Rmu_co8310335.1_g000001 Rmu_sc0001891.1_g000054 Rmu_sc0003778.1_g000028 Rmu_sc0010320.1_g000001 Rmu_sc0012909.1_g000005 Rmu_sc0015560.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382190
rosa_rugosa	Rorug01G0483300 Rorug04G0332300
rosa_samantha	Rh3BG354500 Rh4AG384200 Rh4BG088700 Rh4BG167500 Rh4BG398300 Rh4CG413400 Rh4DG390900 Rh6AG118800
rosa_wichuraiana	Rw4G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	218
AciI	CCGC	6 cut(s)	9, 47, 130, 140, 218, 221
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	57
AfaI	GTAC	3 cut(s)	374, 434, 461
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	364, 404
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	57, 69
ApeKI	GCWGC	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	3 cut(s)	28, 82, 109
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	94, 253
AvaI	CYCGRG	1 cut(s)	293
AvaII	GGWCC	3 cut(s)	28, 82, 109
BalI	TGGCCA	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	402
BceAI	ACGGC	2 cut(s)	91, 391
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BclI	TGATCA	2 cut(s)	3, 303
BcnI	CCSGG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	393
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	3 cut(s)	47, 219, 416
BlsI	GCNGC	3 cut(s)	48, 220, 417
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	3 cut(s)	28, 82, 109
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	28, 82, 109
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	105, 198
BsaWI	WCCGGW	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	112, 208
BseDI	CCNNGG	2 cut(s)	105, 198
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	2 cut(s)	112, 208
BseXI	GCAGC	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	2 cut(s)	59, 71
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	85, 107, 120
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	2 cut(s)	59, 71
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	5 cut(s)	3, 63, 96, 187, 303
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	6 cut(s)	9, 47, 130, 140, 218, 221
BspANI	GGCC	2 cut(s)	59, 71
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	469
BspMAI	CTGCAG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	2 cut(s)	317, 452
BsrI	ACTGG	2 cut(s)	112, 208
BssECI	CCNNGG	2 cut(s)	105, 198
BssMI	GATC	5 cut(s)	3, 63, 96, 187, 303
BssT1I	CCWWGG	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	317, 452
BstBAI	YACGTR	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	306
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	5 cut(s)	6, 66, 99, 190, 306
BstMBI	GATC	5 cut(s)	3, 63, 96, 187, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 146
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	59, 71
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	3 cut(s)	28, 82, 109
CpoI	CGGWCCG	1 cut(s)	82
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	373, 433, 460
CspI	CGGWCCG	1 cut(s)	82
CviAII	CATG	7 cut(s)	61, 199, 346, 370, 397, 442, 451
CviJI	RGCY	6 cut(s)	59, 71, 78, 254, 368, 470
CviKI_1	RGCY	6 cut(s)	59, 71, 78, 254, 368, 470
CviQI	GTAC	3 cut(s)	373, 433, 460
DpnI	GATC	5 cut(s)	5, 65, 98, 189, 305
DpnII	GATC	5 cut(s)	3, 63, 96, 187, 303
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	317, 452
EarI	CTCTTC	2 cut(s)	317, 452
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	28, 82, 109
Eco88I	CYCGRG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	7 cut(s)	64, 202, 349, 373, 400, 445, 454
FaiI	YATR	7 cut(s)	62, 200, 347, 371, 398, 443, 452
FatI	CATG	7 cut(s)	60, 198, 345, 369, 396, 441, 450
FbaI	TGATCA	2 cut(s)	3, 303
Fnu4HI	GCNGC	3 cut(s)	47, 219, 416
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	3 cut(s)	47, 219, 416
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	3 cut(s)	47, 219, 416
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	59, 71
HapII	CCGG	3 cut(s)	85, 107, 120
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	7 cut(s)	64, 202, 349, 373, 400, 445, 454
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HinfI	GANTC	3 cut(s)	224, 244, 352
HpaII	CCGG	3 cut(s)	85, 107, 120
HphI	GGTGA	2 cut(s)	94, 253
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	35, 149, 232, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 146
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	7 cut(s)	64, 202, 349, 373, 400, 445, 454
HspAI	GCGC	1 cut(s)	390
Ksp22I	TGATCA	2 cut(s)	3, 303
Kzo9I	GATC	5 cut(s)	3, 63, 96, 187, 303
LguI	GCTCTTC	2 cut(s)	317, 452
LmnI	GCTCC	2 cut(s)	122, 467
LpnPI	CCDG	8 cut(s)	98, 120, 125, 133, 221, 250, 372, 415
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	132
MaeII	ACGT	1 cut(s)	54
MalI	GATC	5 cut(s)	5, 65, 98, 189, 305
MboI	GATC	5 cut(s)	3, 63, 96, 187, 303
MboII	GAAGA	5 cut(s)	91, 106, 171, 304, 439
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	6 cut(s)	19, 272, 302, 329, 366, 458
Mox20I	TGGCCA	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	3 cut(s)	85, 107, 120
MspR9I	CCNGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	129, 146
NciI	CCSGG	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	5 cut(s)	3, 63, 96, 187, 303
NlaIII	CATG	7 cut(s)	64, 202, 349, 373, 400, 445, 454
NlaIV	GGNNCC	1 cut(s)	469
PaeR7I	CTCGAG	1 cut(s)	293
PciSI	GCTCTTC	2 cut(s)	317, 452
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	244, 352
PkrI	GCNGC	3 cut(s)	48, 220, 417
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	3 cut(s)	28, 82, 109
PspPPI	RGGWCCY	1 cut(s)	28
PspXI	VCTCGAGB	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	3 cut(s)	374, 434, 461
RsaNI	GTAC	3 cut(s)	373, 433, 460
RseI	CAYNNNNRTG	1 cut(s)	440
Rsr2I	CGGWCCG	1 cut(s)	82
RsrII	CGGWCCG	1 cut(s)	82
SapI	GCTCTTC	2 cut(s)	317, 452
SatI	GCNGC	3 cut(s)	47, 219, 416
Sau3AI	GATC	5 cut(s)	3, 63, 96, 187, 303
Sau96I	GGNCC	3 cut(s)	28, 82, 109
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	4 cut(s)	30, 57, 275, 294
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	293
SinI	GGWCC	3 cut(s)	28, 82, 109
SlaI	CTCGAG	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	6 cut(s)	9, 47, 130, 140, 218, 221
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	294, 456
TaqII	GACCGA	1 cut(s)	70
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	2 cut(s)	49, 221
TfiI	GAWTC	2 cut(s)	244, 352
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	153, 163, 202, 439
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	3 cut(s)	28, 82, 109
XhoI	CTCGAG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.