Rh6AG118800

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002177
Physical Location & Seq
Forward (+)
17855569 .. 17855793
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG118800.1

Sequence Viewer

Length: 225 bp
ATGTACTACCAACGAATCCCAGAGTCCGGCAACCTGATGGTCCAGGTCGTCGTGCTCCAGTGCATCATTTGGTACACTCTGTTACTCTTCCTCTTCGAGTACCATGGCGCCAAGCGGCTCGTAATGGAGCAGTTCCCGGAGATCGCCGCCTCCATCGTCTCCTTCAAGGTCGACTCCGACGTCATGTTCCTCGACAGCCGCGACTTCCTCAAAACCGACGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

74

Amino Acids

8.68

Weight (kDa)

4.79

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 8 - 68 2.4e-13 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AatII GACGTC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 201
AciI CCGC 3 cut(s) 115, 147, 199
AcyI GRCGYC 3 cut(s) 108, 180, 219
AfaI GTAC 3 cut(s) 5, 74, 101
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 42
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 2 cut(s) 31, 161
BciT130I CCWGG 1 cut(s) 44
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 223
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 3 cut(s) 116, 147, 199
BlsI GCNGC 3 cut(s) 117, 148, 200
Bme1390I CCNGG 2 cut(s) 44, 137
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 44, 137
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 137
BsaHI GRCGYC 3 cut(s) 108, 180, 219
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 27, 137
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 141
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 3 cut(s) 115, 147, 199
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 3 cut(s) 108, 180, 219
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 92, 98
BstACI GRCGYC 3 cut(s) 108, 180, 219
BstDSI CCRYGG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 42, 135
BstUI CGCG 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 4, 73, 100
CviAII CATG 2 cut(s) 104, 184
CviJI RGCY 2 cut(s) 118, 198
CviKI_1 RGCY 2 cut(s) 118, 198
CviQI GTAC 3 cut(s) 4, 73, 100
DinI GGCGCC 1 cut(s) 109
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 92, 98
EarI CTCTTC 2 cut(s) 92, 98
Eco130I CCWWGG 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 2 cut(s) 107, 187
FaiI YATR 2 cut(s) 105, 185
FatI CATG 2 cut(s) 103, 183
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 116, 147, 199
Fsp4HI GCNGC 3 cut(s) 116, 147, 199
FspBI CTAG 1 cut(s) 223
GlaI GCGC 1 cut(s) 109
GluI GCNGC 3 cut(s) 116, 147, 199
GsuI CTGGAG 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 111
HapII CCGG 2 cut(s) 27, 137
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 3 cut(s) 108, 180, 219
Hin1II CATG 2 cut(s) 107, 187
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 15, 23, 173
HpaII CCGG 2 cut(s) 27, 137
Hpy166II GTNNAC 2 cut(s) 75, 172
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 2 cut(s) 75, 172
Hpy99I CGWCG 3 cut(s) 53, 182, 221
HpyAV CCTTC 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 3 cut(s) 108, 180, 219
Hsp92II CATG 2 cut(s) 107, 187
HspAI GCGC 1 cut(s) 108
KasI GGCGCC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 2 cut(s) 60, 127
LpnPI CCDG 7 cut(s) 29, 33, 40, 47, 56, 71, 150
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 223
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 81
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 2 cut(s) 79, 85
MhlI GDGCHC 1 cut(s) 57
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 2 cut(s) 32, 167
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 4 cut(s) 101, 160, 200, 218
MspI CCGG 2 cut(s) 27, 137
MspR9I CCNGG 2 cut(s) 44, 137
MvaI CCWGG 1 cut(s) 44
MvnI CGCG 1 cut(s) 201
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 103
NdeII GATC 1 cut(s) 141
NlaIII CATG 2 cut(s) 107, 187
NlaIV GGNNCC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 198
PfeI GAWTC 1 cut(s) 15
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 3 cut(s) 117, 148, 200
PleI GAGTC 2 cut(s) 31, 167
PluTI GGCGCC 1 cut(s) 111
PpsI GAGTC 2 cut(s) 31, 167
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 40
RsaI GTAC 3 cut(s) 5, 74, 101
RsaNI GTAC 3 cut(s) 4, 73, 100
SalI GTCGAC 1 cut(s) 170
SatI GCNGC 3 cut(s) 116, 147, 199
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 32, 167
ScrFI CCNGG 2 cut(s) 44, 137
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 36, 48, 171, 183
SfaNI GCATC 1 cut(s) 72
SfoI GGCGCC 1 cut(s) 109
SinI GGWCC 1 cut(s) 40
SsiI CCGC 3 cut(s) 115, 147, 199
SspDI GGCGCC 1 cut(s) 107
SspMI CTAG 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 42, 135
StyI CCWWGG 1 cut(s) 103
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 96, 171, 192
TatI WGTACW 1 cut(s) 3
TauI GCSGC 3 cut(s) 118, 149, 201
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 1 cut(s) 65
TspRI CASTG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 223
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.