Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003778.1

Orthogroup ID

OG0002177

Physical Location & Seq

Genomic Coordinates Forward (+)

69898 .. 70191

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003778.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggtccaggtcgtcgtgctccggtgcatcatttggtacactctgttactcttcctcttcgagtaccgcgacgccaagctgctaataatagagcagttcccggagaccggcacttccatcgtctcctttaaggtcgactccgacgtcatgttcctcgacggccacgacttcatcaaaaccaaggccaagatcggcaacgatggcaagctccacgtcaaggtgaggaagtccaacgcgtccagacggtcgctctcggcaatgacgcctcgcacgtccaacctcacaagagcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

97

Amino Acids

11.09

Weight (kDa)

9.84

Isoelectric Point (pI)

17.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23080 AT1G23080 AT1G23080 AT1G23080 AT1G70940 AT2G01420 AT2G01420 AT2G01420
fragaria_vesca	FvH4_4g32450 FvH4_4g32450 FvH4_4g32450 FvH4_6g35590
malus_domestica	MD13G1025300.v1.1 MD16G1027900.v1.1
prunus_persica	Prupe.1G324900_v2.0.a1 Prupe.1G324900_v2.0.a1
pyrus_communis	pycom13g02370 pycom13g02380 pycom16g02380
rosa_chinensis	RchiOBHm_Chr4g0441311 RchiOBHm_Chr6g0249491
rosa_laevigata	RLG00000006103 RLG00000014076 RLG00000023177
rosa_multiflora	Rmu_co8277815.1_g000001 Rmu_co8310335.1_g000001 Rmu_sc0001891.1_g000054 Rmu_sc0003778.1_g000028 Rmu_sc0010320.1_g000001 Rmu_sc0012909.1_g000005 Rmu_sc0015560.1_g000005
rosa_roxburghii	Rroxscaffold_5G00382190
rosa_rugosa	Rorug01G0483300 Rorug04G0332300
rosa_samantha	Rh3BG354500 Rh4AG384200 Rh4BG088700 Rh4BG167500 Rh4BG398300 Rh4CG413400 Rh4DG390900 Rh6AG118800
rosa_wichuraiana	Rw4G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	2 cut(s)	69, 236
AciI	CCGC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	160
AcyI	GRCGYC	3 cut(s)	72, 144, 263
AfaI	GTAC	2 cut(s)	38, 65
AfiI	CCNNNNNNNGG	2 cut(s)	107, 217
AflIII	ACRYGT	1 cut(s)	234
AjiI	CACGTC	2 cut(s)	214, 273
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	2 cut(s)	79, 208
AluI	AGCT	2 cut(s)	79, 208
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	2 cut(s)	98, 127
AoxI	GGCC	2 cut(s)	160, 183
ApeKI	GCWGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	2 cut(s)	125, 194
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	98, 127
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	2 cut(s)	8, 101
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	2 cut(s)	214, 273
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	8, 101
BmsI	GCATC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	101
BsaHI	GRCGYC	3 cut(s)	72, 144, 263
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 217
Bse118I	RCCGGY	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	107, 217
BseMI	GCAATG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	2 cut(s)	69, 236
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	162, 185
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	3 cut(s)	22, 101, 108
BslI	CCNNNNNNNGG	2 cut(s)	107, 217
BsmAI	GTCTC	2 cut(s)	98, 127
BsmBI	CGTCTC	1 cut(s)	127
BsnI	GGCC	2 cut(s)	162, 185
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	2 cut(s)	162, 185
BspFNI	CGCG	2 cut(s)	69, 236
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	189
BssNI	GRCGYC	3 cut(s)	72, 144, 263
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	56, 62
BstACI	GRCGYC	3 cut(s)	72, 144, 263
BstC8I	GCNNGC	1 cut(s)	206
BstFNI	CGCG	2 cut(s)	69, 236
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	2 cut(s)	98, 127
BstMBI	GATC	1 cut(s)	189
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	6, 99
BstUI	CGCG	2 cut(s)	69, 236
BstV1I	GCAGC	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	162, 185
BtrI	CACGTC	2 cut(s)	214, 273
Cac8I	GCNNGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	3 cut(s)	80, 225, 271
Csp6I	GTAC	2 cut(s)	37, 64
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	4 cut(s)	79, 162, 185, 208
CviKI_1	RGCY	4 cut(s)	79, 162, 185, 208
CviQI	GTAC	2 cut(s)	37, 64
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	56, 62
EarI	CTCTTC	2 cut(s)	56, 62
Eco130I	CCWWGG	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	151
FaiI	YATR	1 cut(s)	149
FatI	CATG	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	162, 185
HapII	CCGG	3 cut(s)	22, 101, 108
HgaI	GACGC	3 cut(s)	80, 225, 271
Hin1I	GRCGYC	3 cut(s)	72, 144, 263
Hin1II	CATG	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	3 cut(s)	22, 101, 108
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	39, 136
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	2 cut(s)	39, 136
Hpy99I	CGWCG	4 cut(s)	17, 74, 146, 161
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	3 cut(s)	144, 213, 272
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpySE526I	ACGT	3 cut(s)	144, 213, 272
Hsp92I	GRCGYC	3 cut(s)	72, 144, 263
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	24, 213
LpnPI	CCDG	5 cut(s)	20, 35, 114, 121, 253
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	3 cut(s)	144, 213, 272
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	2 cut(s)	43, 49
MhlI	GDGCHC	1 cut(s)	21
MluI	ACGCGT	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	165, 255
MnlI	CCTC	5 cut(s)	65, 164, 216, 276, 290
MseI	TTAA	1 cut(s)	129
MspI	CCGG	3 cut(s)	22, 101, 108
MspR9I	CCNGG	2 cut(s)	8, 101
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	2 cut(s)	69, 236
MwoI	GCNNNNNNNGC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	151
NmeAIII	GCCGAG	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	4 cut(s)	66, 141, 162, 269
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	38, 65
RsaNI	GTAC	2 cut(s)	37, 64
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	8, 101
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	9 cut(s)	12, 81, 135, 147, 210, 216, 222, 275, 282
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	4
SsiI	CCGC	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	6, 99
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	3 cut(s)	147, 216, 275
TaqI	TCGA	3 cut(s)	60, 135, 156
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.