Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Reverse (-)

16785907 .. 16789204

Gene Structure 3298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20711.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCCTCGTCATGATGACCGCAGTGGTGGTTCACGGCTCTATGTTGGCCGCTTGTCGTCCCGGACAAGATCACGGGAACTCGAAGATGTATTCAGCAGATATGGAAGAGTACGTGATGTGGATATGAAGCGTGATTTTGCCTTTGTTGAATTCAATGATCCCCGTGATGCTGATGACGCAAGATACAGCCTGAACGGTCGGGATGTTGATGGGAGCCGTTTAATTGTGGAATTTGCCAGGGGGGCACCACGTGGTCCTGGTGGATCCCGTGAGTATCTTGGTAGAGGGCCTCCTCCTGGTTCAGGTCGCTGTTTCAATTGCGGACTTGATGGGCACTGGGCTCGAGATTGCAAAGCTGGGGACTGGAAGAATAAGTGTTATCGCTGTGGAGATCGAGGCCACATTGAAAGAAATTGTCAGAACAGCCCAAAAAAAACTTCCTCCAAACGTGGGCGGAGTCACTCACGCTCACCAAGTCCAAGGCGGGACAGAAGTCGAAGCCGTAGTTACAGCAGGGGTCATAGTTACAGTCGATCAAGATCACCTGTGAGGAGAGAAAGGAGTCTAGAGAGAAGGTCGAGGAGTCCTGCAGACAGCCGGAGCCCAAAGCGTCGCAGGGCTTCTCCACCACCTTCCAAGGGGAGGAAGCATGACCAATCACCTGATGGAAGAAGCCCACAAGAGAGGCGTAGCGTCTCCCCGCAGGATGGCCGATCTGATTACAGTAGGAGTCCCAGGGGAAAGAGTAGAAGCCCTATGGGTGATGCCGAAGAGAAAAGCAATGGTGATAAGAGGCAAAGAACCCCTGTGGAAGAAAATGGCCATAGCCGCAGCCCAAGCCCCGTGCGTAGGGGTGGCAGGAGCCCTGTTGAAGAGGATGATGATAACCATGGTTCTCCAAGAGGCAGTGAATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002244 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0030097 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033119 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0048024 GO:0048025 GO:0048513 GO:0048519 GO:0048523 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903312 GO:1990825

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

307

Amino Acids

34.59

Weight (kDa)

10.9

Isoelectric Point (pI)

104.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	19 - 53	1.1e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AciI	CCGC	7 cut(s)	19, 49, 321, 454, 484, 701, 829
AclWI	GGATC	3 cut(s)	152, 258, 271
AcoI	YGGCCR	3 cut(s)	46, 709, 820
AcsI	RAATTY	2 cut(s)	149, 230
AcvI	CACGTG	1 cut(s)	251
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	7 cut(s)	296, 302, 450, 638, 642, 707, 849
AgsI	TTSAA	5 cut(s)	149, 154, 316, 407, 872
AjnI	CCWGG	4 cut(s)	236, 256, 295, 734
AjuI	GAANNNNNNNTTGG	2 cut(s)	421, 453
AluBI	AGCT	2 cut(s)	356, 917
AluI	AGCT	2 cut(s)	356, 917
Alw26I	GTCTC	1 cut(s)	700
AlwI	GGATC	3 cut(s)	152, 258, 271
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	5 cut(s)	46, 287, 397, 709, 820
ApeKI	GCWGC	1 cut(s)	831
ApoI	RAATTY	2 cut(s)	149, 230
AspS9I	GGNCC	2 cut(s)	254, 287
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	5 cut(s)	462, 534, 651, 773, 797
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	2 cut(s)	247, 336
BalI	TGGCCA	1 cut(s)	822
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	3 cut(s)	343, 605, 866
BbrPI	CACGTG	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	843
BccI	CCATC	4 cut(s)	203, 323, 659, 701
BceAI	ACGGC	3 cut(s)	50, 201, 486
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	4 cut(s)	238, 258, 297, 736
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	588
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	3 cut(s)	49, 829, 832
BlsI	GCNGC	3 cut(s)	50, 830, 833
Bme1390I	CCNGG	5 cut(s)	61, 238, 258, 297, 736
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	254, 287
BmiI	GGNNCC	5 cut(s)	215, 246, 265, 602, 863
BmrFI	CCNGG	5 cut(s)	61, 238, 258, 297, 736
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	2 cut(s)	157, 754
BmuI	ACTGGG	1 cut(s)	346
BoxI	GACNNNNGTC	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	61
BsaAI	YACGTR	2 cut(s)	113, 251
BsaBI	GATNNNNATC	1 cut(s)	538
BsaJI	CCNNGG	6 cut(s)	237, 479, 636, 734, 735, 889
Bsc4I	CCNNNNNNNGG	7 cut(s)	296, 302, 450, 638, 642, 707, 849
Bse1I	ACTGG	2 cut(s)	341, 368
Bse3DI	GCAATG	1 cut(s)	787
Bse8I	GATNNNNATC	1 cut(s)	538
BseBI	CCWGG	4 cut(s)	238, 258, 297, 736
BseDI	CCNNGG	6 cut(s)	237, 479, 636, 734, 735, 889
BseGI	GGATG	3 cut(s)	208, 712, 883
BseJI	GATNNNNATC	1 cut(s)	538
BseLI	CCNNNNNNNGG	7 cut(s)	296, 302, 450, 638, 642, 707, 849
BseMI	GCAATG	1 cut(s)	787
BseNI	ACTGG	2 cut(s)	341, 368
BseRI	GAGGAG	3 cut(s)	282, 565, 595
BseSI	GKGCMC	2 cut(s)	247, 336
BseXI	GCAGC	1 cut(s)	843
BseYI	CCCAGC	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	5 cut(s)	48, 289, 399, 711, 822
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	61, 598
BslFI	GGGAC	4 cut(s)	43, 374, 500, 717
BslI	CCNNNNNNNGG	7 cut(s)	296, 302, 450, 638, 642, 707, 849
BsmAI	GTCTC	1 cut(s)	700
BsmBI	CGTCTC	1 cut(s)	700
BsmFI	GGGAC	4 cut(s)	43, 374, 500, 717
BsnI	GGCC	5 cut(s)	48, 289, 399, 711, 822
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	5 cut(s)	247, 336, 343, 605, 866
Bsp143I	GATC	7 cut(s)	68, 157, 263, 391, 533, 539, 713
Bsp19I	CCATGG	1 cut(s)	889
BspACI	CCGC	7 cut(s)	19, 49, 321, 454, 484, 701, 829
BspANI	GGCC	5 cut(s)	48, 289, 399, 711, 822
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	5 cut(s)	215, 246, 265, 602, 863
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	3 cut(s)	152, 258, 271
BspT107I	GGYRCC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	341, 368
BssECI	CCNNGG	6 cut(s)	237, 479, 636, 734, 735, 889
BssMI	GATC	7 cut(s)	68, 157, 263, 391, 533, 539, 713
BssT1I	CCWWGG	3 cut(s)	479, 636, 889
Bst2UI	CCWGG	4 cut(s)	238, 258, 297, 736
Bst4CI	ACNGT	3 cut(s)	197, 530, 725
Bst6I	CTCTTC	3 cut(s)	100, 765, 867
BstBAI	YACGTR	2 cut(s)	113, 251
BstDSI	CCRYGG	1 cut(s)	889
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	208, 712, 883
BstKTI	GATC	7 cut(s)	71, 160, 266, 394, 536, 542, 716
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	7 cut(s)	68, 157, 263, 391, 533, 539, 713
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 242, 828, 837
BstNI	CCWGG	4 cut(s)	238, 258, 297, 736
BstPAI	GACNNNNGTC	1 cut(s)	492
BstSCI	CCNGG	5 cut(s)	59, 236, 256, 295, 734
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	2 cut(s)	247, 336
BstV1I	GCAGC	1 cut(s)	843
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	5 cut(s)	48, 289, 399, 711, 822
BtgI	CCRYGG	1 cut(s)	889
BtsCI	GGATG	3 cut(s)	208, 712, 883
BtsI	GCAGTG	2 cut(s)	28, 913
BtsIMutI	CAGTG	3 cut(s)	28, 334, 913
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	254, 287
CseI	GACGC	3 cut(s)	185, 599, 682
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	3 cut(s)	11, 650, 890
CviQI	GTAC	1 cut(s)	110
DpnI	GATC	7 cut(s)	70, 159, 265, 393, 535, 541, 715
DpnII	GATC	7 cut(s)	68, 157, 263, 391, 533, 539, 713
DraIII	CACNNNGTG	1 cut(s)	251
EaeI	YGGCCR	3 cut(s)	46, 709, 820
Eam1104I	CTCTTC	3 cut(s)	100, 765, 867
EarI	CTCTTC	3 cut(s)	100, 765, 867
EciI	GGCGGA	1 cut(s)	469
Eco130I	CCWWGG	3 cut(s)	479, 636, 889
Eco24I	GRGCYC	3 cut(s)	343, 605, 866
Eco47I	GGWCC	1 cut(s)	254
Eco72I	CACGTG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	342
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	4 cut(s)	236, 256, 295, 734
EcoT14I	CCWWGG	3 cut(s)	479, 636, 889
EcoT38I	GRGCYC	3 cut(s)	343, 605, 866
ErhI	CCWWGG	3 cut(s)	479, 636, 889
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	3 cut(s)	14, 653, 893
FaiI	YATR	9 cut(s)	12, 42, 102, 125, 522, 651, 758, 825, 891
FaqI	GGGAC	4 cut(s)	43, 374, 500, 717
FatI	CATG	3 cut(s)	10, 649, 889
FauI	CCCGC	2 cut(s)	477, 708
Fnu4HI	GCNGC	3 cut(s)	49, 829, 832
FokI	GGATG	3 cut(s)	215, 719, 890
FriOI	GRGCYC	3 cut(s)	343, 605, 866
Fsp4HI	GCNGC	3 cut(s)	49, 829, 832
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	3 cut(s)	49, 829, 832
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	5 cut(s)	48, 289, 399, 711, 822
HapII	CCGG	2 cut(s)	61, 598
HgaI	GACGC	3 cut(s)	185, 599, 682
Hin1II	CATG	3 cut(s)	14, 653, 893
HinfI	GANTC	5 cut(s)	457, 562, 583, 730, 911
HpaII	CCGG	2 cut(s)	61, 598
HphI	GGTGA	5 cut(s)	462, 534, 651, 773, 797
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	420, 718
Hpy188III	TCNNGA	5 cut(s)	11, 200, 344, 537, 566
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	2 cut(s)	567, 642
HpyCH4III	ACNGT	3 cut(s)	197, 530, 725
HpyCH4IV	ACGT	3 cut(s)	112, 250, 448
HpyCH4V	TGCA	2 cut(s)	351, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 242, 828, 837
HpySE526I	ACGT	3 cut(s)	112, 250, 448
Hsp92II	CATG	3 cut(s)	14, 653, 893
Kzo9I	GATC	7 cut(s)	68, 157, 263, 391, 533, 539, 713
LmnI	GCTCC	3 cut(s)	213, 600, 861
Lsp1109I	GCAGC	1 cut(s)	843
LweI	GCATC	2 cut(s)	157, 754
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	3 cut(s)	112, 250, 448
MaeIII	GTNAC	3 cut(s)	458, 506, 524
MalI	GATC	7 cut(s)	70, 159, 265, 393, 535, 541, 715
MboI	GATC	7 cut(s)	68, 157, 263, 391, 533, 539, 713
MboII	GAAGA	7 cut(s)	95, 117, 379, 681, 782, 824, 884
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	1 cut(s)	263
MhlI	GDGCHC	5 cut(s)	247, 336, 343, 605, 866
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	5 cut(s)	149, 222, 230, 316, 412
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	4 cut(s)	466, 571, 592, 739
Mox20I	TGGCCA	1 cut(s)	822
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	2 cut(s)	221, 919
Msp20I	TGGCCA	1 cut(s)	822
MspI	CCGG	2 cut(s)	61, 598
MspR9I	CCNGG	5 cut(s)	61, 238, 258, 297, 736
MunI	CAATTG	1 cut(s)	316
MvaI	CCWGG	4 cut(s)	238, 258, 297, 736
MwoI	GCNNNNNNNGC	4 cut(s)	176, 242, 828, 837
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	889
NdeII	GATC	7 cut(s)	68, 157, 263, 391, 533, 539, 713
NlaIII	CATG	3 cut(s)	14, 653, 893
NlaIV	GGNNCC	5 cut(s)	215, 246, 265, 602, 863
NmuCI	GTSAC	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	342
PagI	TCATGA	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	911
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	50, 830, 833
PleI	GAGTC	4 cut(s)	465, 570, 591, 738
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
PpsI	GAGTC	4 cut(s)	465, 570, 591, 738
Ppu21I	YACGTR	2 cut(s)	113, 251
PshAI	GACNNNNGTC	1 cut(s)	492
Psp6I	CCWGG	4 cut(s)	236, 256, 295, 734
PspCI	CACGTG	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	4 cut(s)	236, 256, 295, 734
PspN4I	GGNNCC	5 cut(s)	215, 246, 265, 602, 863
PspPI	GGNCC	2 cut(s)	254, 287
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	221, 919
SatI	GCNGC	3 cut(s)	49, 829, 832
Sau3AI	GATC	7 cut(s)	68, 157, 263, 391, 533, 539, 713
Sau96I	GGNCC	2 cut(s)	254, 287
SchI	GAGTC	4 cut(s)	466, 571, 592, 739
ScrFI	CCNGG	5 cut(s)	61, 238, 258, 297, 736
SduI	GDGCHC	5 cut(s)	247, 336, 343, 605, 866
SfaNI	GCATC	2 cut(s)	157, 754
SfcI	CTRYAG	1 cut(s)	588
Sfr274I	CTCGAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	5 cut(s)	149, 222, 230, 316, 412
SsiI	CCGC	7 cut(s)	19, 49, 321, 454, 484, 701, 829
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	5 cut(s)	59, 236, 256, 295, 734
StyI	CCWWGG	3 cut(s)	479, 636, 889
TaaI	ACNGT	3 cut(s)	197, 530, 725
TaiI	ACGT	3 cut(s)	115, 253, 451
TaqI	TCGA	6 cut(s)	81, 343, 394, 496, 532, 578
TasI	AATT	5 cut(s)	149, 222, 230, 316, 412
TauI	GCSGC	2 cut(s)	51, 831
TfiI	GAWTC	1 cut(s)	911
Tru1I	TTAA	2 cut(s)	221, 919
Tru9I	TTAA	2 cut(s)	221, 919
TscAI	CASTG	3 cut(s)	28, 341, 913
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	1 cut(s)	831
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	3 cut(s)	28, 341, 913
VpaK11BI	GGWCC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	2 cut(s)	149, 230
XbaI	TCTAGA	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XhoI	CTCGAG	1 cut(s)	342
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.