Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Reverse (-)

43734944 .. 43741462

Gene Structure 6519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0318700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGATCCTACAAAGAAGATGAAGACACGAGTTACTCGGATCTGGATAGATCGGTGGTGAAGAGAAGAGCAGCTTGCTTTGGTTCGATTCTGGTGAGTGTTGCAGGAGGACTCTTATTAGGTTGGTGGGAGTATCAGTATCATCCTTCATATCGTCAACTGTGGATGGTGCCCTTTGGTCTTATTCTATTTGCTACACCAGTGATTGTTTGGTTCTCTTTGGTGGTCTCTCATATCTGTAATTCGAAAGATGGTGATAATGGCACAAGGGTGAGTCAACCCGTTTATCCACTGAGTAACTCGGTTTCTGCTAAGAAAGATGAGCAATGGAATAACCATATCGATCATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002244 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0030097 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033119 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0048024 GO:0048025 GO:0048513 GO:0048519 GO:0048523 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903312 GO:1990825

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

6.02

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_Z	PF16594	26 - 77	6.9e-27	Putative AtpZ or ATP-synthase-associated

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AclWI	GGATC	2 cut(s)	13, 48
AleI	CACNNNNGTG	1 cut(s)	269
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	13, 48
ApeKI	GCWGC	1 cut(s)	71
AsuHPI	GGTGA	4 cut(s)	70, 106, 266, 283
AsuII	TTCGAA	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	2 cut(s)	160, 245
BcoDI	GTCTC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmiI	GGNNCC	2 cut(s)	7, 171
BpiI	GAAGAC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	332
BseCI	ATCGAT	1 cut(s)	342
BseGI	GGATG	2 cut(s)	142, 171
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	169
BshVI	ATCGAT	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	5, 40, 50, 343
BspCNI	CTCAG	1 cut(s)	285
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	7, 171
BspPI	GGATC	2 cut(s)	13, 48
BspQI	GCTCTTC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	4 cut(s)	5, 40, 50, 343
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	2 cut(s)	56, 61
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	293, 312
BstF5I	GGATG	2 cut(s)	142, 171
BstKTI	GATC	4 cut(s)	8, 43, 53, 346
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	4 cut(s)	5, 40, 50, 343
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	2 cut(s)	5, 40
BstYI	RGATCY	2 cut(s)	5, 40
Bsu15I	ATCGAT	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	142, 171
BtsIMutI	CAGTG	2 cut(s)	207, 290
Cac8I	GCNNGC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	342
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	1 cut(s)	74
CviKI_1	RGCY	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	293, 312
DpnI	GATC	4 cut(s)	7, 42, 52, 345
DpnII	GATC	4 cut(s)	5, 40, 50, 343
Eam1104I	CTCTTC	2 cut(s)	56, 61
EarI	CTCTTC	2 cut(s)	56, 61
Eco31I	GGTCTC	1 cut(s)	232
FaeI	CATG	1 cut(s)	350
FaiI	YATR	5 cut(s)	151, 234, 339, 348, 352
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	2 cut(s)	129, 178
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	350
HincII	GTYRAC	2 cut(s)	158, 278
HindII	GTYRAC	2 cut(s)	158, 278
HinfI	GANTC	3 cut(s)	88, 111, 274
HphI	GGTGA	4 cut(s)	70, 106, 266, 283
Hpy166II	GTNNAC	2 cut(s)	158, 278
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	158, 278
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	293, 312
Hsp92II	CATG	1 cut(s)	350
Kzo9I	GATC	4 cut(s)	5, 40, 50, 343
LguI	GCTCTTC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	29, 77, 90, 213
Lsp1109I	GCAGC	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	32, 296
MalI	GATC	4 cut(s)	7, 42, 52, 345
MboI	GATC	4 cut(s)	5, 40, 50, 343
MboII	GAAGA	4 cut(s)	29, 35, 73, 78
MflI	RGATCY	2 cut(s)	5, 40
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	2 cut(s)	105, 283
MnlI	CCTC	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	269
NdeII	GATC	4 cut(s)	5, 40, 50, 343
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	2 cut(s)	7, 171
NspV	TTCGAA	1 cut(s)	245
OliI	CACNNNNGTG	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	105, 282
PpsI	GAGTC	2 cut(s)	105, 282
PspN4I	GGNNCC	2 cut(s)	7, 171
PsuI	RGATCY	2 cut(s)	5, 40
RseI	CAYNNNNRTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	61
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	5, 40, 50, 343
SchI	GAGTC	2 cut(s)	105, 283
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	2 cut(s)	76, 124
SfuI	TTCGAA	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	86, 245, 342
TasI	AATT	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	2 cut(s)	207, 297
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	36, 138
TspRI	CASTG	2 cut(s)	207, 297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.