Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Forward (+)

12023138 .. 12024874

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCATGTGAAAACATCCGGTGGGGCAGCATGTAAGGCAGTGACTATAGTTATAGTTGGAGAATCATTTATTCAAGATCTGACTTGGGGTTTACTTGACATATTTGTGAAGGTGCTGATAAGATATGGCAAATTTTCAAACGCTACCCTGCTGTTGGACTTTGGGTTTACACTTCCATACAACATTCACGACCAGGTCCAGATCCAGGTAAACATACCTCATCATGATATTCTTCGTGATTTGAAGTTGGAACTTTTGAAGAGACATCATAGACCAATCAACAATGACGTCAATGGTTTCAACTCATCTGATTATGATAACCCATTACCACACAGGGAAGTGAAATCTGGTAGTGGAAAGGGGAAAGGAATTCCACAGTCACTTCGTGCATTTGCTCGTGTCCTATGTTGTACCTCGTGTGAAGAACTTAGTGACCTGGCCAATGAAGCAGTGGAACATGATGGTCGATTGGCTCGGCGTCCTTTAACAAATAGAAGCAGAGAGATTGAAGCACATCAGATGCTGATGGAAAAATTAACCCAATTAGCTGAGGATTGTGATGCATCTTTTAAGTCTCTGGGACCCGTAAGTTCTCCTGTTACGTGTGAAAGGCCCTCTCTCCGGAAGCAAATGGCTCGCGATCTCCTTAATGGAGAGCTTCGCATCCTCAAATCCGCGTGCGCATGGCTTAAAGACTACTGCACAACCTTGACTGCAACAGACTACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

243

Amino Acids

27.29

Weight (kDa)

8.1

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubis-subs-bind	PF09273	76 - 223	1.7e-06	Rubisco LSMT substrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
Acc16I	TGCGCA	1 cut(s)	682
AccII	CGCG	2 cut(s)	639, 677
AccIII	TCCGGA	1 cut(s)	621
AciI	CCGC	1 cut(s)	675
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	131, 369
AcyI	GRCGYC	2 cut(s)	288, 478
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	154, 205, 621
AflIII	ACRYGT	1 cut(s)	602
AgsI	TTSAA	6 cut(s)	74, 138, 244, 259, 301, 509
AjnI	CCWGG	3 cut(s)	192, 204, 435
AluBI	AGCT	2 cut(s)	548, 658
AluI	AGCT	2 cut(s)	548, 658
Alw26I	GTCTC	2 cut(s)	256, 579
AlwI	GGATC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	621
AoxI	GGCC	2 cut(s)	438, 611
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	131, 369
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	196, 581, 612
AvaII	GGWCC	2 cut(s)	196, 581
BalI	TGGCCA	1 cut(s)	440
BauI	CACGAG	2 cut(s)	396, 415
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	455, 520
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	3 cut(s)	194, 206, 437
BcoDI	GTCTC	2 cut(s)	256, 579
BfmI	CTRYAG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	3 cut(s)	194, 206, 437
Bme18I	GGWCC	2 cut(s)	196, 581
BmgT120I	GGNCC	3 cut(s)	196, 581, 612
BmiI	GGNNCC	2 cut(s)	582, 583
BmrFI	CCNGG	3 cut(s)	194, 206, 437
BmsI	GCATC	4 cut(s)	510, 550, 572, 672
Bpu10I	CCTNAGC	1 cut(s)	549
BsaAI	YACGTR	1 cut(s)	603
BsaHI	GRCGYC	2 cut(s)	288, 478
BsaWI	WCCGGW	2 cut(s)	17, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 205, 621
BseAI	TCCGGA	1 cut(s)	621
BseBI	CCWGG	3 cut(s)	194, 206, 437
BseGI	GGATG	2 cut(s)	14, 663
BseLI	CCNNNNNNNGG	3 cut(s)	154, 205, 621
BseMII	CTCAG	1 cut(s)	540
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	685
Bsh1236I	CGCG	2 cut(s)	639, 677
BshFI	GGCC	2 cut(s)	440, 613
BsiSI	CCGG	2 cut(s)	18, 622
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	3 cut(s)	154, 205, 621
BsmAI	GTCTC	2 cut(s)	256, 579
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	2 cut(s)	440, 613
Bsp13I	TCCGGA	1 cut(s)	621
Bsp143I	GATC	3 cut(s)	76, 201, 640
Bsp68I	TCGCGA	1 cut(s)	639
BspACI	CCGC	1 cut(s)	675
BspANI	GGCC	2 cut(s)	440, 613
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	621
BspFNI	CGCG	2 cut(s)	639, 677
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	582, 583
BspPI	GGATC	1 cut(s)	196
BssMI	GATC	3 cut(s)	76, 201, 640
BssNI	GRCGYC	2 cut(s)	288, 478
BssSI	CACGAG	2 cut(s)	396, 415
Bst2BI	CACGAG	2 cut(s)	396, 415
Bst2UI	CCWGG	3 cut(s)	194, 206, 437
Bst4CI	ACNGT	2 cut(s)	378, 728
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	288, 478
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	637, 679
BstDEI	CTNAG	2 cut(s)	428, 549
BstF5I	GGATG	2 cut(s)	14, 663
BstFNI	CGCG	2 cut(s)	639, 677
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	3 cut(s)	79, 204, 643
BstMAI	GTCTC	2 cut(s)	256, 579
BstMBI	GATC	3 cut(s)	76, 201, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 446
BstNI	CCWGG	3 cut(s)	194, 206, 437
BstNSI	RCATGY	2 cut(s)	8, 33
BstSCI	CCNGG	3 cut(s)	192, 204, 435
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	2 cut(s)	639, 677
BstV1I	GCAGC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	76, 201
BstYI	RGATCY	2 cut(s)	76, 201
BsuRI	GGCC	2 cut(s)	440, 613
BtsCI	GGATG	2 cut(s)	14, 663
BtsI	GCAGTG	2 cut(s)	45, 456
BtsIMutI	CAGTG	2 cut(s)	45, 456
BtuMI	TCGCGA	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	637, 679
CaiI	CAGNNNCTG	1 cut(s)	523
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	196, 581, 612
CseI	GACGC	1 cut(s)	467
CsiI	ACCWGGT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	5 cut(s)	5, 30, 224, 458, 684
CviJI	RGCY	7 cut(s)	440, 473, 548, 613, 635, 658, 688
CviKI_1	RGCY	7 cut(s)	440, 473, 548, 613, 635, 658, 688
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	2 cut(s)	428, 549
DpnI	GATC	3 cut(s)	78, 203, 642
DpnII	GATC	3 cut(s)	76, 201, 640
DraIII	CACNNNGTG	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	196, 581
EcoO109I	RGGNCCY	2 cut(s)	581, 612
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	3 cut(s)	192, 204, 435
EcoT22I	ATGCAT	2 cut(s)	6, 565
FaeI	CATG	5 cut(s)	8, 33, 227, 461, 687
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	5 cut(s)	4, 29, 223, 457, 683
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	650
Fsp4HI	GCNGC	1 cut(s)	27
FspAI	RTGCGCAY	1 cut(s)	682
FspI	TGCGCA	1 cut(s)	682
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	440, 613
HapII	CCGG	2 cut(s)	18, 622
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	1 cut(s)	683
Hin1I	GRCGYC	2 cut(s)	288, 478
Hin1II	CATG	5 cut(s)	8, 33, 227, 461, 687
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	18, 622
Hpy166II	GTNNAC	3 cut(s)	92, 168, 211
Hpy188I	TCNGA	3 cut(s)	81, 310, 519
Hpy188III	TCNNGA	7 cut(s)	74, 188, 199, 224, 236, 622, 638
Hpy8I	GTNNAC	3 cut(s)	92, 168, 211
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	378, 728
HpyCH4IV	ACGT	2 cut(s)	288, 602
HpyCH4V	TGCA	5 cut(s)	4, 389, 563, 702, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 446
HpyF3I	CTNAG	2 cut(s)	428, 549
HpySE526I	ACGT	2 cut(s)	288, 602
Hsp92I	GRCGYC	2 cut(s)	288, 478
Hsp92II	CATG	5 cut(s)	8, 33, 227, 461, 687
HspAI	GCGC	1 cut(s)	681
KflI	GGGWCCC	1 cut(s)	581
Kpn2I	TCCGGA	1 cut(s)	621
Kzo9I	GATC	3 cut(s)	76, 201, 640
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	4 cut(s)	510, 550, 572, 672
MabI	ACCWGGT	1 cut(s)	192
MaeII	ACGT	2 cut(s)	288, 602
MaeIII	GTNAC	4 cut(s)	40, 378, 431, 598
MalI	GATC	3 cut(s)	78, 203, 642
MboI	GATC	3 cut(s)	76, 201, 640
MboII	GAAGA	3 cut(s)	224, 271, 434
MflI	RGATCY	2 cut(s)	76, 201
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	4 cut(s)	131, 369, 533, 542
MluNI	TGGCCA	1 cut(s)	440
MmeI	TCCRAC	3 cut(s)	37, 135, 228
MnlI	CCTC	5 cut(s)	228, 424, 544, 625, 677
Mox20I	TGGCCA	1 cut(s)	440
Mph1103I	ATGCAT	2 cut(s)	6, 565
MroI	TCCGGA	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	6 cut(s)	485, 536, 570, 648, 690, 730
MslI	CAYNNNNRTG	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	2 cut(s)	18, 622
MspR9I	CCNGG	3 cut(s)	194, 206, 437
MvaI	CCWGG	3 cut(s)	194, 206, 437
MvnI	CGCG	2 cut(s)	639, 677
MwoI	GCNNNNNNNGC	2 cut(s)	35, 446
NdeII	GATC	3 cut(s)	76, 201, 640
NlaIII	CATG	5 cut(s)	8, 33, 227, 461, 687
NlaIV	GGNNCC	2 cut(s)	582, 583
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	3 cut(s)	40, 378, 431
NruI	TCGCGA	1 cut(s)	639
NsbI	TGCGCA	1 cut(s)	682
NsiI	ATGCAT	2 cut(s)	6, 565
NspI	RCATGY	2 cut(s)	8, 33
PagI	TCATGA	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	603
PpuMI	RGGWCCY	1 cut(s)	581
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	3 cut(s)	192, 204, 435
PspGI	CCWGG	3 cut(s)	192, 204, 435
PspN4I	GGNNCC	2 cut(s)	582, 583
PspPI	GGNCC	3 cut(s)	196, 581, 612
PspPPI	RGGWCCY	1 cut(s)	581
PstNI	CAGNNNCTG	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	76, 201
PsyI	GACNNNGTC	1 cut(s)	194
RruI	TCGCGA	1 cut(s)	639
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	6 cut(s)	485, 536, 570, 648, 690, 730
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	76, 201, 640
Sau96I	GGNCC	3 cut(s)	196, 581, 612
ScrFI	CCNGG	3 cut(s)	194, 206, 437
SexAI	ACCWGGT	1 cut(s)	192
SfaNI	GCATC	4 cut(s)	510, 550, 572, 672
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	2 cut(s)	196, 581
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	131, 369, 533, 542
SsiI	CCGC	1 cut(s)	675
StyD4I	CCNGG	3 cut(s)	192, 204, 435
TaaI	ACNGT	2 cut(s)	378, 728
TaiI	ACGT	2 cut(s)	291, 605
TaqI	TCGA	1 cut(s)	466
TasI	AATT	4 cut(s)	131, 369, 533, 542
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	6 cut(s)	485, 536, 570, 648, 690, 730
Tru9I	TTAA	6 cut(s)	485, 536, 570, 648, 690, 730
TscAI	CASTG	2 cut(s)	45, 456
TseFI	GTSAC	3 cut(s)	40, 378, 431
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	3 cut(s)	40, 378, 431
TspDTI	ATGAA	1 cut(s)	459
TspRI	CASTG	2 cut(s)	45, 456
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	196, 581
XapI	RAATTY	2 cut(s)	131, 369
XceI	RCATGY	2 cut(s)	8, 33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
ZraI	GACGTC	1 cut(s)	289
Zsp2I	ATGCAT	2 cut(s)	6, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.