Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Reverse (-)

14604613 .. 14608338

Gene Structure 3726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14450.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCATTGCACGATATTTTGGAGTGATGATGCGCTGGAGCTGATTCGCCAAAGCTCTGTATATCAGGAAACAATTAATCAAAGATCTCAAATCAAAAAGGAATTTTTGGCAATTAGGACGGCTCTCAAGAACTTCCCTGAAATGTCCAAAAGTATCACCTTTAAGGATTTCATGCACGTATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCATGAAGGGTTATTCCCTGATCCCATTTGCTGATTTTTTGAATCATGACGGCACTTCAGAATCAATAGTGTTGAGTGACAACGACAAACATATCTCAGAGGTCATTGCTGACCGCAATTATGCTCCTGGTGAACAGGTACTGATAAGATATGGAAATTTTTCAAATGCTACCCTGCTTCTTGACTTTGGGTTTACACTTTCATACAACGTCCACGACCAGGTCGAGATCCAGGTCAATATACCTCACCATGACGTCCTTCGTGAAATGAAGTGGGAACTTTTGAAGAGACATCACAGACCAATCAGTAATGATGTCAATGGTTTCGACTCTTCAATGGATTCTTTCACTATCAAGGAAGTTAGGTCTGGTAGTGGAAAAGGGAAAAGAATTCCTCAGTCACTTCGTGCTTTTGCTCGTGTTCTATGTTGCGCCTCTCCTCAAGAACTTAATGACCTGGCCAAAGAAGCTGCAGAACATGATGGTCGATTGGCTCGACGTCCTTTAACAAACAGCATCAGAGAGATTGAAGCACATCAGATGTTGTTATCAAAATTAACCCGATTAGCTGAGGATTGTGATGCATCTATCAAGGTAAAGATGCTAACTTTTTACTCCCTTCGTTTACAGAACTTGTCTATGCTAATCTTTGGGACCCGTAAGTTCTCCAGTTACATGCGAAAGACTTTCGATCCGGAGGCAAATGGCTCAGGATCTCCTCAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

313

Amino Acids

35.7

Weight (kDa)

8.27

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	468, 712
AccIII	TCCGGA	1 cut(s)	904
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	4 cut(s)	226, 433, 896, 931
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	3 cut(s)	101, 367, 600
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	2 cut(s)	465, 709
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	5 cut(s)	253, 375, 496, 546, 740
AjnI	CCWGG	4 cut(s)	337, 429, 441, 666
AluBI	AGCT	4 cut(s)	40, 54, 680, 779
AluI	AGCT	4 cut(s)	40, 54, 680, 779
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	4 cut(s)	226, 433, 896, 931
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	198
Aor13HI	TCCGGA	1 cut(s)	904
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	3 cut(s)	101, 367, 600
AseI	ATTAAT	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	34, 644
AspS9I	GGNCC	1 cut(s)	864
AsuHPI	GGTGA	3 cut(s)	148, 353, 449
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	864
BalI	TGGCCA	1 cut(s)	671
BauI	CACGAG	1 cut(s)	627
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	2 cut(s)	135, 277
BciT130I	CCWGG	4 cut(s)	339, 431, 443, 668
BcoDI	GTCTC	1 cut(s)	493
BfmI	CTRYAG	1 cut(s)	681
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	4 cut(s)	339, 431, 443, 668
Bme18I	GGWCC	1 cut(s)	864
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	864
BmiI	GGNNCC	2 cut(s)	865, 866
BmrFI	CCNGG	4 cut(s)	339, 431, 443, 668
BmsI	GCATC	5 cut(s)	19, 735, 781, 801, 803
BpmI	CTGGAG	2 cut(s)	56, 862
Bpu10I	CCTNAGC	2 cut(s)	780, 919
BpuEI	CTTGAG	2 cut(s)	110, 636
BsaAI	YACGTR	1 cut(s)	178
BsaHI	GRCGYC	2 cut(s)	465, 709
BsaWI	WCCGGW	1 cut(s)	904
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	879
Bse3DI	GCAATG	2 cut(s)	4, 315
BseAI	TCCGGA	1 cut(s)	904
BseBI	CCWGG	4 cut(s)	339, 431, 443, 668
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	2 cut(s)	4, 315
BseMII	CTCAG	4 cut(s)	321, 620, 771, 933
BseNI	ACTGG	1 cut(s)	879
BseRI	GAGGAG	2 cut(s)	639, 918
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	1 cut(s)	671
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	905
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	877
BsnI	GGCC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	904
Bsp143I	GATC	5 cut(s)	83, 231, 438, 901, 923
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	4 cut(s)	320, 619, 772, 932
BspEI	TCCGGA	1 cut(s)	904
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	865, 866
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	4 cut(s)	226, 433, 896, 931
BsrDI	GCAATG	2 cut(s)	4, 315
BsrI	ACTGG	1 cut(s)	879
BssMI	GATC	5 cut(s)	83, 231, 438, 901, 923
BssNI	GRCGYC	2 cut(s)	465, 709
BssSI	CACGAG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	4 cut(s)	339, 431, 443, 668
Bst6I	CTCTTC	2 cut(s)	491, 547
BstACI	GRCGYC	2 cut(s)	465, 709
BstBAI	YACGTR	1 cut(s)	178
BstDEI	CTNAG	4 cut(s)	307, 606, 780, 919
BstHHI	GCGC	2 cut(s)	34, 644
BstKTI	GATC	5 cut(s)	86, 234, 441, 904, 926
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	5 cut(s)	83, 231, 438, 901, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	4 cut(s)	339, 431, 443, 668
BstNSI	RCATGY	1 cut(s)	889
BstSCI	CCNGG	4 cut(s)	337, 429, 441, 666
BstSFI	CTRYAG	1 cut(s)	681
BstV1I	GCAGC	1 cut(s)	667
BstX2I	RGATCY	3 cut(s)	83, 438, 923
BstYI	RGATCY	3 cut(s)	83, 438, 923
BsuRI	GGCC	1 cut(s)	671
CaiI	CAGNNNCTG	1 cut(s)	352
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	2 cut(s)	34, 644
Cfr13I	GGNCC	1 cut(s)	864
CsiI	ACCWGGT	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	7 cut(s)	172, 204, 214, 257, 461, 689, 886
CviJI	RGCY	8 cut(s)	40, 54, 122, 671, 680, 704, 779, 918
CviKI_1	RGCY	8 cut(s)	40, 54, 122, 671, 680, 704, 779, 918
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	4 cut(s)	307, 606, 780, 919
DpnI	GATC	5 cut(s)	85, 233, 440, 903, 925
DpnII	GATC	5 cut(s)	83, 231, 438, 901, 923
DraIII	CACNNNGTG	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	2 cut(s)	491, 547
EarI	CTCTTC	2 cut(s)	491, 547
Eco47I	GGWCC	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	4 cut(s)	337, 429, 441, 666
EcoT22I	ATGCAT	2 cut(s)	6, 796
FaeI	CATG	7 cut(s)	175, 207, 217, 260, 464, 692, 889
FaqI	GGGAC	1 cut(s)	877
FatI	CATG	7 cut(s)	171, 203, 213, 256, 460, 688, 885
Fnu4HI	GCNGC	1 cut(s)	681
Fsp4HI	GCNGC	1 cut(s)	681
GlaI	GCGC	2 cut(s)	33, 643
GluI	GCNGC	1 cut(s)	681
GsuI	CTGGAG	2 cut(s)	56, 862
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	1 cut(s)	905
HhaI	GCGC	2 cut(s)	34, 644
Hin1I	GRCGYC	2 cut(s)	465, 709
Hin1II	CATG	7 cut(s)	175, 207, 217, 260, 464, 692, 889
Hin6I	GCGC	2 cut(s)	32, 642
HinP1I	GCGC	2 cut(s)	32, 642
HinfI	GANTC	5 cut(s)	43, 253, 272, 539, 551
HpaII	CCGG	1 cut(s)	905
HphI	GGTGA	3 cut(s)	148, 353, 449
Hpy166II	GTNNAC	4 cut(s)	344, 405, 424, 836
Hpy188I	TCNGA	4 cut(s)	271, 310, 731, 750
Hpy8I	GTNNAC	4 cut(s)	344, 405, 424, 836
Hpy99I	CGWCG	1 cut(s)	711
HpyAV	CCTTC	3 cut(s)	211, 479, 839
HpyCH4IV	ACGT	4 cut(s)	177, 420, 465, 709
HpyCH4V	TGCA	5 cut(s)	4, 9, 175, 683, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	4 cut(s)	307, 606, 780, 919
HpySE526I	ACGT	4 cut(s)	177, 420, 465, 709
Hsp92I	GRCGYC	2 cut(s)	465, 709
Hsp92II	CATG	7 cut(s)	175, 207, 217, 260, 464, 692, 889
HspAI	GCGC	2 cut(s)	32, 642
KflI	GGGWCCC	1 cut(s)	864
Kpn2I	TCCGGA	1 cut(s)	904
Kzo9I	GATC	5 cut(s)	83, 231, 438, 901, 923
LmnI	GCTCC	2 cut(s)	37, 340
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	5 cut(s)	19, 735, 781, 801, 803
MabI	ACCWGGT	1 cut(s)	429
MaeII	ACGT	4 cut(s)	177, 420, 465, 709
MaeIII	GTNAC	4 cut(s)	190, 287, 609, 881
MalI	GATC	5 cut(s)	85, 233, 440, 903, 925
MboI	GATC	5 cut(s)	83, 231, 438, 901, 923
MboII	GAAGA	2 cut(s)	508, 534
MflI	RGATCY	3 cut(s)	83, 438, 923
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	7 cut(s)	72, 101, 111, 328, 367, 600, 764
MluNI	TGGCCA	1 cut(s)	671
MlyI	GAGTC	1 cut(s)	533
MnlI	CCTC	8 cut(s)	304, 465, 615, 655, 660, 775, 901, 939
Mox20I	TGGCCA	1 cut(s)	671
Mph1103I	ATGCAT	2 cut(s)	6, 796
MroI	TCCGGA	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	5 cut(s)	75, 162, 660, 716, 767
MslI	CAYNNNNRTG	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	671
MspI	CCGG	1 cut(s)	905
MspR9I	CCNGG	4 cut(s)	339, 431, 443, 668
MvaI	CCWGG	4 cut(s)	339, 431, 443, 668
MwoI	GCNNNNNNNGC	1 cut(s)	677
NdeII	GATC	5 cut(s)	83, 231, 438, 901, 923
NlaIII	CATG	7 cut(s)	175, 207, 217, 260, 464, 692, 889
NlaIV	GGNNCC	2 cut(s)	865, 866
NmuCI	GTSAC	2 cut(s)	287, 609
NsiI	ATGCAT	2 cut(s)	6, 796
NspI	RCATGY	1 cut(s)	889
PaeR7I	CTCGAG	1 cut(s)	198
PagI	TCATGA	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	2 cut(s)	432, 703
PdmI	GAANNNNTTC	1 cut(s)	370
PfeI	GAWTC	4 cut(s)	43, 253, 272, 551
PflFI	GACNNNGTC	1 cut(s)	431
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	864
PshBI	ATTAAT	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	864
Psp6I	CCWGG	4 cut(s)	337, 429, 441, 666
PspGI	CCWGG	4 cut(s)	337, 429, 441, 666
PspN4I	GGNNCC	2 cut(s)	865, 866
PspPI	GGNCC	1 cut(s)	864
PspPPI	RGGWCCY	1 cut(s)	864
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	3 cut(s)	83, 438, 923
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	5 cut(s)	75, 162, 660, 716, 767
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	5 cut(s)	83, 231, 438, 901, 923
Sau96I	GGNCC	1 cut(s)	864
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	4 cut(s)	339, 431, 443, 668
SexAI	ACCWGGT	1 cut(s)	429
SfaNI	GCATC	5 cut(s)	19, 735, 781, 801, 803
SfcI	CTRYAG	1 cut(s)	681
Sfr274I	CTCGAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	864
SlaI	CTCGAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	3 cut(s)	125, 198, 651
SmoI	CTYRAG	3 cut(s)	125, 198, 651
Sse9I	AATT	7 cut(s)	72, 101, 111, 328, 367, 600, 764
SsiI	CCGC	1 cut(s)	325
StyD4I	CCNGG	4 cut(s)	337, 429, 441, 666
TaiI	ACGT	4 cut(s)	180, 423, 468, 712
TaqI	TCGA	6 cut(s)	199, 435, 537, 697, 706, 900
TasI	AATT	7 cut(s)	72, 101, 111, 328, 367, 600, 764
TfiI	GAWTC	4 cut(s)	43, 253, 272, 551
Tru1I	TTAA	5 cut(s)	75, 162, 660, 716, 767
Tru9I	TTAA	5 cut(s)	75, 162, 660, 716, 767
TseFI	GTSAC	2 cut(s)	287, 609
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	2 cut(s)	287, 609
TspDTI	ATGAA	4 cut(s)	160, 230, 402, 494
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	864
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	3 cut(s)	101, 367, 600
XceI	RCATGY	1 cut(s)	889
XhoI	CTCGAG	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	370
ZraI	GACGTC	2 cut(s)	466, 710
Zsp2I	ATGCAT	2 cut(s)	6, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.