Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Forward (+)

428227 .. 428863

Gene Structure 637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g00300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCTAAATATCCGCTGGCTTCCCCGCCGTCAACATCTCAGCCTCTCTTACACTCTAAACACCAAGCTCAACTTCCACTCCTTGTCCCAACCCAAGGTCGACGAATTCGACGACTTCTTGCCGTGGCTGGAGCGGAAGGCCGGCGCAGATATTTCGTCAGCGCTTTCGATTGGGAAATCGGCGTACGGAACGTCTCTGTTTTCTTCAAAGAGTATAACGGCTGGAGACTGCGTTTTGAAGGTTCCGTACAGCTTGCAACTAGCTTCGGATAATCTCGTTCCAGAACTGAAAGATTTGTTGAGTGATGAAGTTGGCGATGCTGGAAAGCTTGCCGCTGTCGTTTTGTTTGAGCAGAGAATGGGCAATGTAGATTGCTGTTCTAGTTTAATCTACTATGTTGTGGAAAGATTTTCTCTGTGGAGTTTGAGGTTTATGTTTATGCAGGATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

151

Amino Acids

16.88

Weight (kDa)

5.63

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	4 cut(s)	13, 25, 133, 333
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	2 cut(s)	185, 248
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	207, 238
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	4 cut(s)	67, 252, 263, 328
AluI	AGCT	4 cut(s)	67, 252, 263, 328
Alw26I	GTCTC	2 cut(s)	198, 219
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	146, 163
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BceAI	ACGGC	3 cut(s)	12, 106, 234
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BcoDI	GTCTC	2 cut(s)	198, 219
BfaI	CTAG	3 cut(s)	260, 381, 451
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	307
BpmI	CTGGAG	2 cut(s)	149, 243
BsaJI	CCNNGG	2 cut(s)	93, 122
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	93, 122
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	141
BsiWI	CGTACG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	198, 219
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	140
BspACI	CCGC	4 cut(s)	13, 25, 133, 333
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	93, 122
BssT1I	CCWWGG	1 cut(s)	93
BstC8I	GCNNGC	4 cut(s)	17, 142, 254, 330
BstDEI	CTNAG	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	146, 163
BstMAI	GTCTC	2 cut(s)	198, 219
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	330
Cac8I	GCNNGC	4 cut(s)	17, 142, 254, 330
CfoI	GCGC	2 cut(s)	146, 163
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	184, 247
CviJI	RGCY	9 cut(s)	19, 42, 67, 127, 140, 221, 252, 263, 328
CviKI_1	RGCY	9 cut(s)	19, 42, 67, 127, 140, 221, 252, 263, 328
CviQI	GTAC	2 cut(s)	184, 247
DdeI	CTNAG	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	93
Eco47III	AGCGCT	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	198
FaiI	YATR	4 cut(s)	215, 396, 434, 440
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	70
FauI	CCCGC	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	3 cut(s)	260, 381, 451
GlaI	GCGC	2 cut(s)	145, 162
GluI	GCNGC	1 cut(s)	333
GsuI	CTGGAG	2 cut(s)	149, 243
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	2 cut(s)	146, 163
Hin6I	GCGC	2 cut(s)	144, 161
HinP1I	GCGC	2 cut(s)	144, 161
HincII	GTYRAC	2 cut(s)	32, 100
HindII	GTYRAC	2 cut(s)	32, 100
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	2 cut(s)	32, 100
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	32, 100
Hpy99I	CGWCG	2 cut(s)	104, 113
HpyAV	CCTTC	2 cut(s)	130, 232
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	256, 442
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	191
HspAI	GCGC	2 cut(s)	144, 161
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	113, 154, 207, 294, 306, 428
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	3 cut(s)	260, 381, 451
MaeII	ACGT	1 cut(s)	191
MbiI	CCGCTC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	195
MluCI	AATT	1 cut(s)	104
MnlI	CCTC	2 cut(s)	53, 420
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	1 cut(s)	386
MspA1I	CMGCKG	2 cut(s)	15, 335
MspI	CCGG	1 cut(s)	141
NaeI	GCCGGC	1 cut(s)	142
NgoMIV	GCCGGC	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 108
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	446
Pfl23II	CGTACG	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	334
PspLI	CGTACG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	243
RsaI	GTAC	2 cut(s)	185, 248
RsaNI	GTAC	2 cut(s)	184, 247
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	1 cut(s)	333
SetI	ASST	8 cut(s)	69, 99, 194, 243, 254, 265, 330, 431
SfaNI	GCATC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	4 cut(s)	13, 25, 133, 333
SspMI	CTAG	3 cut(s)	260, 381, 451
StyI	CCWWGG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	3 cut(s)	99, 108, 167
TasI	AATT	1 cut(s)	104
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	2 cut(s)	201, 234
XapI	RAATTY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	3 cut(s)	260, 381, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.