Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Reverse (-)

25155505 .. 25159254

Gene Structure 3750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G224200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCCTCGACATGATGACCGCCATGGTGGTTCACGGCTCTATGTTGGTCGCTTGTCATCACGGACAAGATCACGCGAACTTGAAGATGTATTTAGCAGATATGGAAGAGTACGTGATGTGGATATGAAGCGCGACTTTGCCTTTGTTGAATTTAGTGACCCTCGGGATGCTGATGATGCAAGATATAGCCTGAACGGTCGGGATGTTGATGGGAGCCGTCTAATTGTGGAATTTGCAAGGGGGGCACCACGGGGTCCTGGCGGATCTCGTGAGTATCTTGGGAGAGGGCCTCCCCCTGGATCAGGACGCTGTTTCAATTGTGGACTTGATGGGCACTGGGCTCGAGATTGCAAAGCTGGGGACTGGAAGAATAAGTGTTATCGATGTGGAGAACGAGGGCACATTGAAAGAAACTGTCAGAATAGTCCAAAGAAAACCAAAGGGCGTAGTCATTCACGTTCACCAAGTCCAAGGCGGGGCAGAAGTCGAAGCCGTAGTTACAGCAGGGGTCATAGTTACAGTCGATCCAGATCACCTGTGAGGAGAGAAAGGAGTTTGGAGAGAAGATCAAGGAGTCCTCAAGACAGCCGGAGCCCTAAGAGGCGTAGGGCTTCACCACCACCATCCAAGGGGAGGAAGCACGATCGTACACCCGAAGGGAGGAGCCCACGAGTGAGGGGTAGCCTCTCCCCCCAGGATCGCAGATCCGATTACAGTAGGAGTCCCAGGGGAAAGAGTAGAAGCCCTATTAACGATGTTGAAGGAGACAAGAACGGGGATAGGAGGCATAGAAGCCCTGCTGAAGAAAATGGTCACAGCCGCAGTCGCAGTCGCAGCCCAAGCCCCATCCGCAGGGGTGATAGGAGCCCTGTTGAAGATGATGAAGATAACCATGGTTCTCCAAGAGGCAGTGAATCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002244 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0030097 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0033119 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0048024 GO:0048025 GO:0048513 GO:0048519 GO:0048523 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1903312 GO:1990825

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

308

Amino Acids

34.94

Weight (kDa)

11.17

Isoelectric Point (pI)

101.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AccII	CGCG	2 cut(s)	75, 132
AciI	CCGC	5 cut(s)	19, 261, 475, 820, 850
AclWI	GGATC	5 cut(s)	271, 307, 519, 699, 705
AcsI	RAATTY	2 cut(s)	149, 230
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	2 cut(s)	111, 649
AfiI	CCNNNNNNNGG	7 cut(s)	296, 302, 476, 629, 633, 660, 852
AgsI	TTSAA	6 cut(s)	83, 149, 316, 407, 761, 875
AjnI	CCWGG	4 cut(s)	256, 295, 693, 725
AluBI	AGCT	2 cut(s)	356, 920
AluI	AGCT	2 cut(s)	356, 920
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	5 cut(s)	271, 307, 519, 699, 705
Ama87I	CYCGRG	2 cut(s)	162, 342
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	834
ApoI	RAATTY	2 cut(s)	149, 230
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	254, 287
AsuHPI	GGTGA	4 cut(s)	453, 525, 606, 869
AvaI	CYCGRG	2 cut(s)	162, 342
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	3 cut(s)	247, 336, 402
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	4 cut(s)	343, 596, 668, 869
BauI	CACGAG	2 cut(s)	267, 669
BbvI	GCAGC	1 cut(s)	846
BccI	CCATC	4 cut(s)	203, 323, 631, 854
BceAI	ACGGC	3 cut(s)	50, 201, 477
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	4 cut(s)	258, 297, 695, 727
BcoDI	GTCTC	1 cut(s)	759
BisI	GCNGC	2 cut(s)	820, 835
BlsI	GCNGC	2 cut(s)	821, 836
Bme1390I	CCNGG	4 cut(s)	258, 297, 695, 727
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	2 cut(s)	162, 342
BmgT120I	GGNCC	2 cut(s)	254, 287
BmiI	GGNNCC	6 cut(s)	215, 246, 255, 593, 665, 866
BmrFI	CCNGG	4 cut(s)	258, 297, 695, 727
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	2 cut(s)	157, 166
BmuI	ACTGGG	1 cut(s)	346
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpuEI	CTTGAG	1 cut(s)	564
Bsa29I	ATCGAT	1 cut(s)	382
BsaAI	YACGTR	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	7 cut(s)	296, 302, 476, 629, 633, 660, 852
Bse1I	ACTGG	2 cut(s)	341, 368
Bse8I	GATNNNNATC	1 cut(s)	529
BseBI	CCWGG	4 cut(s)	258, 297, 695, 727
BseCI	ATCGAT	1 cut(s)	382
BseGI	GGATG	4 cut(s)	172, 208, 623, 846
BseJI	GATNNNNATC	1 cut(s)	529
BseLI	CCNNNNNNNGG	7 cut(s)	296, 302, 476, 629, 633, 660, 852
BseNI	ACTGG	2 cut(s)	341, 368
BseRI	GAGGAG	2 cut(s)	556, 676
BseSI	GKGCMC	3 cut(s)	247, 336, 402
BseXI	GCAGC	1 cut(s)	846
BseYI	CCCAGC	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	75, 132
Bsh1285I	CGRYCG	2 cut(s)	199, 646
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	244
BshVI	ATCGAT	1 cut(s)	382
BsiEI	CGRYCG	2 cut(s)	199, 646
BsiHKCI	CYCGRG	2 cut(s)	162, 342
BsiSI	CCGG	1 cut(s)	589
BslFI	GGGAC	2 cut(s)	374, 708
BslI	CCNNNNNNNGG	7 cut(s)	296, 302, 476, 629, 633, 660, 852
BsmAI	GTCTC	1 cut(s)	759
BsmFI	GGGAC	2 cut(s)	374, 708
BsnI	GGCC	1 cut(s)	289
BsoBI	CYCGRG	2 cut(s)	162, 342
Bsp1286I	GDGCHC	7 cut(s)	247, 336, 343, 402, 596, 668, 869
Bsp143I	GATC	9 cut(s)	68, 263, 299, 524, 530, 566, 643, 697, 704
Bsp19I	CCATGG	2 cut(s)	22, 892
BspACI	CCGC	5 cut(s)	19, 261, 475, 820, 850
BspANI	GGCC	1 cut(s)	289
BspDI	ATCGAT	1 cut(s)	382
BspFNI	CGCG	2 cut(s)	75, 132
BspLI	GGNNCC	6 cut(s)	215, 246, 255, 593, 665, 866
BspPI	GGATC	5 cut(s)	271, 307, 519, 699, 705
BspT107I	GGYRCC	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	341, 368
BssMI	GATC	9 cut(s)	68, 263, 299, 524, 530, 566, 643, 697, 704
BssSI	CACGAG	2 cut(s)	267, 669
BssT1I	CCWWGG	4 cut(s)	22, 470, 627, 892
Bst2BI	CACGAG	2 cut(s)	267, 669
Bst2UI	CCWGG	4 cut(s)	258, 297, 695, 727
Bst4CI	ACNGT	4 cut(s)	197, 416, 521, 716
Bst6I	CTCTTC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	3 cut(s)	22, 248, 892
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	4 cut(s)	172, 208, 623, 846
BstFNI	CGCG	2 cut(s)	75, 132
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	9 cut(s)	71, 266, 302, 527, 533, 569, 646, 700, 707
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	9 cut(s)	68, 263, 299, 524, 530, 566, 643, 697, 704
BstMCI	CGRYCG	2 cut(s)	199, 646
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 242, 825, 834, 840, 849
BstNI	CCWGG	4 cut(s)	258, 297, 695, 727
BstSCI	CCNGG	4 cut(s)	256, 295, 693, 725
BstSLI	GKGCMC	3 cut(s)	247, 336, 402
BstUI	CGCG	2 cut(s)	75, 132
BstV1I	GCAGC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	263, 704
BstYI	RGATCY	2 cut(s)	263, 704
Bsu15I	ATCGAT	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	382
BtgI	CCRYGG	3 cut(s)	22, 248, 892
BtsCI	GGATG	4 cut(s)	172, 208, 623, 846
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	2 cut(s)	334, 916
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	254, 287
ClaI	ATCGAT	1 cut(s)	382
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	110, 648
CviAII	CATG	3 cut(s)	11, 23, 893
CviQI	GTAC	2 cut(s)	110, 648
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	9 cut(s)	70, 265, 301, 526, 532, 568, 645, 699, 706
DpnII	GATC	9 cut(s)	68, 263, 299, 524, 530, 566, 643, 697, 704
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	276
Eco130I	CCWWGG	4 cut(s)	22, 470, 627, 892
Eco24I	GRGCYC	4 cut(s)	343, 596, 668, 869
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	822
Eco88I	CYCGRG	2 cut(s)	162, 342
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoO109I	RGGNCCY	2 cut(s)	254, 287
EcoRII	CCWGG	4 cut(s)	256, 295, 693, 725
EcoT14I	CCWWGG	4 cut(s)	22, 470, 627, 892
EcoT38I	GRGCYC	4 cut(s)	343, 596, 668, 869
ErhI	CCWWGG	4 cut(s)	22, 470, 627, 892
FaeI	CATG	3 cut(s)	14, 26, 896
FaiI	YATR	9 cut(s)	12, 24, 42, 102, 125, 186, 513, 789, 894
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	2 cut(s)	374, 708
FatI	CATG	3 cut(s)	10, 22, 892
FauI	CCCGC	1 cut(s)	468
Fnu4HI	GCNGC	2 cut(s)	820, 835
FokI	GGATG	4 cut(s)	179, 215, 610, 833
FriOI	GRGCYC	4 cut(s)	343, 596, 668, 869
Fsp4HI	GCNGC	2 cut(s)	820, 835
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	820, 835
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	589
HgaI	GACGC	1 cut(s)	315
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	14, 26, 896
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	574, 721, 914
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	4 cut(s)	453, 525, 606, 869
Hpy166II	GTNNAC	4 cut(s)	32, 323, 461, 650
Hpy188I	TCNGA	2 cut(s)	420, 709
Hpy188III	TCNNGA	7 cut(s)	164, 200, 269, 303, 344, 528, 581
Hpy8I	GTNNAC	4 cut(s)	32, 323, 461, 650
HpyAV	CCTTC	2 cut(s)	650, 755
HpyCH4III	ACNGT	4 cut(s)	197, 416, 521, 716
HpyCH4IV	ACGT	2 cut(s)	112, 457
HpyCH4V	TGCA	3 cut(s)	179, 236, 351
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 242, 825, 834, 840, 849
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	2 cut(s)	112, 457
Hsp92II	CATG	3 cut(s)	14, 26, 896
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	9 cut(s)	68, 263, 299, 524, 530, 566, 643, 697, 704
LmnI	GCTCC	4 cut(s)	213, 591, 663, 864
Lsp1109I	GCAGC	1 cut(s)	846
LweI	GCATC	2 cut(s)	157, 166
MaeII	ACGT	2 cut(s)	112, 457
MaeIII	GTNAC	4 cut(s)	155, 497, 515, 812
MalI	GATC	9 cut(s)	70, 265, 301, 526, 532, 568, 645, 699, 706
MboI	GATC	9 cut(s)	68, 263, 299, 524, 530, 566, 643, 697, 704
MboII	GAAGA	7 cut(s)	95, 117, 379, 576, 815, 887, 896
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	2 cut(s)	263, 704
MhlI	GDGCHC	7 cut(s)	247, 336, 343, 402, 596, 668, 869
MluCI	AATT	4 cut(s)	149, 222, 230, 316
MlyI	GAGTC	2 cut(s)	583, 730
MseI	TTAA	1 cut(s)	750
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	4 cut(s)	258, 297, 695, 727
MunI	CAATTG	1 cut(s)	316
MvaI	CCWGG	4 cut(s)	258, 297, 695, 727
MvnI	CGCG	2 cut(s)	75, 132
MwoI	GCNNNNNNNGC	6 cut(s)	176, 242, 825, 834, 840, 849
NcoI	CCATGG	2 cut(s)	22, 892
NdeII	GATC	9 cut(s)	68, 263, 299, 524, 530, 566, 643, 697, 704
NlaIII	CATG	3 cut(s)	14, 26, 896
NlaIV	GGNNCC	6 cut(s)	215, 246, 255, 593, 665, 866
NmuCI	GTSAC	2 cut(s)	155, 812
PaeR7I	CTCGAG	1 cut(s)	342
PasI	CCCWGGG	1 cut(s)	726
PfeI	GAWTC	1 cut(s)	914
PkrI	GCNGC	2 cut(s)	821, 836
Ple19I	CGATCG	1 cut(s)	646
PleI	GAGTC	2 cut(s)	582, 729
PpsI	GAGTC	2 cut(s)	582, 729
Ppu21I	YACGTR	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	4 cut(s)	256, 295, 693, 725
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	4 cut(s)	256, 295, 693, 725
PspN4I	GGNNCC	6 cut(s)	215, 246, 255, 593, 665, 866
PspPI	GGNCC	2 cut(s)	254, 287
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	263, 704
PvuI	CGATCG	1 cut(s)	646
RsaI	GTAC	2 cut(s)	111, 649
RsaNI	GTAC	2 cut(s)	110, 648
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	2 cut(s)	820, 835
Sau3AI	GATC	9 cut(s)	68, 263, 299, 524, 530, 566, 643, 697, 704
Sau96I	GGNCC	2 cut(s)	254, 287
SchI	GAGTC	2 cut(s)	583, 730
ScrFI	CCNGG	4 cut(s)	258, 297, 695, 727
SduI	GDGCHC	7 cut(s)	247, 336, 343, 402, 596, 668, 869
SetI	ASST	5 cut(s)	115, 358, 460, 538, 922
SfaNI	GCATC	2 cut(s)	157, 166
Sfr274I	CTCGAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	342, 579
SmoI	CTYRAG	2 cut(s)	342, 579
Sse9I	AATT	4 cut(s)	149, 222, 230, 316
SsiI	CCGC	5 cut(s)	19, 261, 475, 820, 850
StyD4I	CCNGG	4 cut(s)	256, 295, 693, 725
StyI	CCWWGG	4 cut(s)	22, 470, 627, 892
TaaI	ACNGT	4 cut(s)	197, 416, 521, 716
TaiI	ACGT	2 cut(s)	115, 460
TaqI	TCGA	5 cut(s)	7, 343, 382, 487, 523
TasI	AATT	4 cut(s)	149, 222, 230, 316
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	1 cut(s)	914
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	2 cut(s)	341, 916
TseFI	GTSAC	2 cut(s)	155, 812
TseI	GCWGC	1 cut(s)	834
Tsp45I	GTSAC	2 cut(s)	155, 812
TspDTI	ATGAA	2 cut(s)	140, 897
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	2 cut(s)	341, 916
VpaK11BI	GGWCC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	2 cut(s)	149, 230
XhoI	CTCGAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.