Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Reverse (-)

54641492 .. 54649161

Gene Structure 7670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG320400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGCTACTGGTAGCTCGACAATTCAGCCATCGCTGGTGGCGCCGCCGCCGTCCACACATCGGCCTCTCCCACACTCCACTCACCAACCTCAACTTCCATTCCGAATCCGACGACTTCTTGCCGTGGCTGGAGCGCAAGTCCGGCACCGAAATCTCTTCCGCTCTTTCGATAGGGAAATGCACTCTCGGAACGGCTCTCTTTGCTTCCAAGAGCATAAGAGCCGGAGACTGCATATTGAAAGTTCCGTACAGCGTGCAACTAGCTCCGGATAATCTTGCTCCGGAATTGAGAGCTTTGTTAGGTGATCGAGTCGGTGATGTTGCGAAGGTCGCCATTGTCATTTTGCTCGAGCAGAAAATGGGCCAGGACTCTGAATGGGCTCCTTACATCAGCCGGCTTCCTCGCCCCGAGGAGATGCATAGCACAATATTTTGGAGCGAACATGAGTTGGAGATGATTTGTCAAAGCTCTCTGTTTCAGGAGACAATTAATCAAAGATCCCTTGTTGAAAAGGAATTTTTGGCAGTTAGGAGAGCTCTTGAGCACTTTCCTGAGATGTTCCAAAGTATCAGCTGTAAGGATTTCATGCATGCATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCAGAAAGGGTTATTCCCTGATTCCATTTGCAGATTTTTTGAACCATGATGGGACTTCAGAATCAGTTGTGCTGAGTGATGATGACAAACATTTCTCAGAGGTGATTGCTGATCGTAGTTATGCTCAAGGTGAACAGGTGCTGATAAGATATGGCAAATTTTCAAACGCTACCCTGCTGTTGGACTTTGGGTTTACACTTCCATACAACATTCACGACCAGGTCCAGATCCAGGTAAACATACCTCATCATGATATTCTTCGTGATTTGAAGTTGGAACTTTTGAAGAGACATCATAGACGAATCAACAATGACGTCAATGGTTTCAACTCTTCAGTGGATTGTTTCACAATCAAGGAAGTGAAATCTGGTAGTGGAAAGGGGAAAGGAATTCCACAGTCACTTCGTGCATTTGCTCGTGTCCTGTGTTGTACCTCTTGTGAAGAACTTAGTGACCTGGTCAATGAAGCAGTGGAACATGATGGTCGATTGGCTCGGCGTCCTTTAACAAATAGAAGCAGAGAGATTGAAGCACATCAGATGCTGATGGAAAAATTAACCCAATTAGCTGAGGATTGTGATGCATCTTTTAAGTCTCTGGGACCCCCTTCGTTTTCTTCAGATAAAATGCCTCGTCATGATGACCGCCATGGTGGTACACGGCTCTATGTTGGTCGCTTGTCGTCCCGGACAAGATCACGGGAACTGGAAGATGTATTCAGCCGATATGGAAGAGTACGTGATGTGGATATGAAGCGTGATTTTGCCTTTGTTGAATTTAATGATCCCCGTGATGCTGATGACGCAAGATATAGCCTGAATGGTCGGGATGTTGATGGGAGCCGTTTAATTGTGGAATTTGCCAGGGGGGCACCACGTGGTCCAGGTGGATCCCGTGAGTATCTTGGTAGAGGGCCTCCTCCTGGTTCAGGGCGCTGTTTCAATTGTGGACTTGATGGGCATTGGGCTCGAGATTGCAAAGCTGGGGACTGGAAGAATAAGTGTTATCGTTGTGGGGAACGAGGCCACATTGAAAGAAATTGTCAGAACAGCCCGAAGAAAACCTCCTCCAAACGTGGGCGGAGTCACTCACGCTCACCAAGTCCAAGGCGGGGCAGAAGTCGAAGCCGTAGTTACAGCAGGGGTCATAGTTACAGTCAATCAAGATCACCTGTGAGGAGAGAAAGGAGTCTAGAGAGAAGATCAAGAAGTCCTGCAGACAGCCGGAGCCCTAAGCGTCGCAGGGCTTCTCCACCACCTTCCAAGGGGAGGAAGCGTGACCAATCTCCCGATGGGAGAAGCCCACAAGAGCGGCGTAGTGTCTCCCCTCGGGATCGCCGATCTGACTACAGTAGGAGTCCCAGGGGAAAGAGTAGAAGCCCTATAGGTGATGCCGAAGAGAAAAGCAATGGTGATAAGATGCACAGAAGCCCTGTAGAAGAAAATGGCCATAGCGGCAGCCCAAGCCCCGTACGTAGGGGTGATAGGAGCCCCGCTGAAGAGGATGATGATAACCATGGTTCTCCAAGAGGCAGTGAATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

723

Amino Acids

81.95

Weight (kDa)

9.56

Isoelectric Point (pI)

74.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	430 - 491	1.1e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	942
AccB1I	GGYRCC	3 cut(s)	39, 143, 1495
AccBSI	CCGCTC	2 cut(s)	161, 1936
AccIII	TCCGGA	2 cut(s)	265, 280
AciI	CCGC	9 cut(s)	43, 46, 159, 1270, 1705, 1735, 1936, 2079, 2118
AclWI	GGATC	6 cut(s)	492, 847, 1403, 1509, 1522, 1965
AcoI	YGGCCR	1 cut(s)	2071
AcsI	RAATTY	5 cut(s)	515, 782, 1014, 1400, 1481
AcuI	CTGAAG	4 cut(s)	666, 942, 1227, 2142
AcvI	CACGTG	1 cut(s)	1502
AcyI	GRCGYC	3 cut(s)	40, 939, 1123
AdeI	CACNNNGTG	2 cut(s)	1031, 1502
AfaI	GTAC	5 cut(s)	248, 1057, 1282, 1362, 2097
AjnI	CCWGG	8 cut(s)	363, 843, 855, 1080, 1487, 1507, 1546, 1985
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	9 cut(s)	14, 263, 293, 468, 536, 573, 1193, 1607, 2168
AluI	AGCT	9 cut(s)	14, 263, 293, 468, 536, 573, 1193, 1607, 2168
Alw21I	GWGCWC	2 cut(s)	538, 546
Alw26I	GTCTC	5 cut(s)	219, 476, 907, 1224, 1951
AlwI	GGATC	6 cut(s)	492, 847, 1403, 1509, 1522, 1965
AlwNI	CAGNNNCTG	2 cut(s)	766, 1168
Ama87I	CYCGRG	5 cut(s)	347, 407, 612, 1593, 1953
Aor13HI	TCCGGA	2 cut(s)	265, 280
AoxI	GGCC	5 cut(s)	61, 361, 1538, 1648, 2071
ApeKI	GCWGC	1 cut(s)	2082
ApoI	RAATTY	5 cut(s)	515, 782, 1014, 1400, 1481
AseI	ATTAAT	1 cut(s)	489
AspLEI	GCGC	3 cut(s)	42, 135, 1560
AspS9I	GGNCC	5 cut(s)	361, 847, 1226, 1505, 1538
AsuC2I	CCSGG	1 cut(s)	1312
AvaI	CYCGRG	5 cut(s)	347, 407, 612, 1593, 1953
AvaII	GGWCC	3 cut(s)	847, 1226, 1505
BaeGI	GKGCMC	1 cut(s)	1498
BalI	TGGCCA	1 cut(s)	2073
BamHI	GGATCC	1 cut(s)	1514
BanI	GGYRCC	3 cut(s)	39, 143, 1495
BanII	GRGCYC	5 cut(s)	382, 538, 1594, 1856, 2117
BauI	CACGAG	1 cut(s)	1041
BbrPI	CACGTG	1 cut(s)	1502
Bbv12I	GWGCWC	2 cut(s)	538, 546
BbvCI	CCTCAGC	1 cut(s)	1194
BbvI	GCAGC	1 cut(s)	2094
BccI	CCATC	7 cut(s)	36, 668, 1100, 1165, 1454, 1574, 1910
BceAI	ACGGC	6 cut(s)	33, 106, 207, 1301, 1452, 1737
BcgI	CGANNNNNNTGC	2 cut(s)	1574, 1608
BciT130I	CCWGG	8 cut(s)	365, 845, 857, 1082, 1489, 1509, 1548, 1987
BcnI	CCSGG	1 cut(s)	1312
BcoDI	GTCTC	5 cut(s)	219, 476, 907, 1224, 1951
BfaI	CTAG	2 cut(s)	260, 1817
BfmI	CTRYAG	4 cut(s)	1839, 1972, 2007, 2058
BfoI	RGCGCY	2 cut(s)	43, 1561
BglI	GCCNNNNNGGC	2 cut(s)	1493, 2079
BisI	GCNGC	5 cut(s)	43, 46, 1937, 2080, 2083
BlsI	GCNGC	5 cut(s)	44, 47, 1938, 2081, 2084
Bme1390I	CCNGG	9 cut(s)	365, 845, 857, 1082, 1312, 1489, 1509, 1548, 1987
Bme18I	GGWCC	3 cut(s)	847, 1226, 1505
BmeT110I	CYCGRG	5 cut(s)	347, 407, 612, 1593, 1953
BmgT120I	GGNCC	5 cut(s)	361, 847, 1226, 1505, 1538
BmrFI	CCNGG	9 cut(s)	365, 845, 857, 1082, 1312, 1489, 1509, 1548, 1987
BmsI	GCATC	7 cut(s)	405, 1155, 1195, 1217, 1408, 2005, 2034
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	2 cut(s)	1194, 1857
BpuEI	CTTGAG	2 cut(s)	560, 735
BpuMI	CCSGG	1 cut(s)	1312
BsaAI	YACGTR	3 cut(s)	1364, 1502, 2099
BsaHI	GRCGYC	3 cut(s)	40, 939, 1123
BsaWI	WCCGGW	2 cut(s)	265, 280
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 1885, 1915
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	3 cut(s)	12, 1335, 1619
Bse3DI	GCAATG	1 cut(s)	2038
BseAI	TCCGGA	2 cut(s)	265, 280
BseBI	CCWGG	8 cut(s)	365, 845, 857, 1082, 1489, 1509, 1548, 1987
BseGI	GGATG	2 cut(s)	1459, 2134
BseMI	GCAATG	1 cut(s)	2038
BseMII	CTCAG	4 cut(s)	543, 689, 735, 1185
BseNI	ACTGG	3 cut(s)	12, 1335, 1619
BseRI	GAGGAG	4 cut(s)	425, 1533, 1681, 1816
BseSI	GKGCMC	1 cut(s)	1498
BseXI	GCAGC	1 cut(s)	2094
BseYI	CCCAGC	1 cut(s)	1607
BshFI	GGCC	5 cut(s)	63, 363, 1540, 1650, 2073
BshNI	GGYRCC	3 cut(s)	39, 143, 1495
BsiHKAI	GWGCWC	2 cut(s)	538, 546
BsiHKCI	CYCGRG	5 cut(s)	347, 407, 612, 1593, 1953
BsiSI	CCGG	7 cut(s)	141, 222, 266, 281, 394, 1312, 1849
BsiWI	CGTACG	1 cut(s)	2095
BslFI	GGGAC	5 cut(s)	691, 1239, 1294, 1625, 1968
BsmAI	GTCTC	5 cut(s)	219, 476, 907, 1224, 1951
BsmFI	GGGAC	5 cut(s)	691, 1239, 1294, 1625, 1968
BsnI	GGCC	5 cut(s)	63, 363, 1540, 1650, 2073
BsoBI	CYCGRG	5 cut(s)	347, 407, 612, 1593, 1953
Bsp1286I	GDGCHC	7 cut(s)	382, 538, 546, 1498, 1594, 1856, 2117
Bsp13I	TCCGGA	2 cut(s)	265, 280
Bsp19I	CCATGG	2 cut(s)	1273, 2140
BspACI	CCGC	9 cut(s)	43, 46, 159, 1270, 1705, 1735, 1936, 2079, 2118
BspANI	GGCC	5 cut(s)	63, 363, 1540, 1650, 2073
BspCNI	CTCAG	4 cut(s)	544, 690, 734, 1186
BspEI	TCCGGA	2 cut(s)	265, 280
BspHI	TCATGA	2 cut(s)	874, 1261
BspMAI	CTGCAG	1 cut(s)	1843
BspPI	GGATC	6 cut(s)	492, 847, 1403, 1509, 1522, 1965
BspT107I	GGYRCC	3 cut(s)	39, 143, 1495
BsrBI	CCGCTC	2 cut(s)	161, 1936
BsrDI	GCAATG	1 cut(s)	2038
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	3 cut(s)	12, 1335, 1619
BssAI	RCCGGY	1 cut(s)	393
BssNI	GRCGYC	3 cut(s)	40, 939, 1123
BssSI	CACGAG	1 cut(s)	1041
BssT1I	CCWWGG	4 cut(s)	1273, 1730, 1887, 2140
Bst2BI	CACGAG	1 cut(s)	1041
Bst2UI	CCWGG	8 cut(s)	365, 845, 857, 1082, 1489, 1509, 1548, 1987
Bst4CI	ACNGT	3 cut(s)	1023, 1781, 1976
Bst6I	CTCTTC	6 cut(s)	160, 905, 961, 1351, 2016, 2118
BstACI	GRCGYC	3 cut(s)	40, 939, 1123
BstBAI	YACGTR	3 cut(s)	1364, 1502, 2099
BstC8I	GCNNGC	3 cut(s)	254, 395, 591
BstDEI	CTNAG	6 cut(s)	552, 698, 721, 1073, 1194, 1857
BstDSI	CCRYGG	3 cut(s)	122, 1273, 2140
BstENI	CCTNNNNNAGG	1 cut(s)	1551
BstF5I	GGATG	2 cut(s)	1459, 2134
BstH2I	RGCGCY	2 cut(s)	43, 1561
BstHHI	GCGC	3 cut(s)	42, 135, 1560
BstMAI	GTCTC	5 cut(s)	219, 476, 907, 1224, 1951
BstMWI	GCNNNNNNNGC	8 cut(s)	39, 141, 200, 329, 1427, 1493, 2079, 2088
BstNI	CCWGG	8 cut(s)	365, 845, 857, 1082, 1489, 1509, 1548, 1987
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	9 cut(s)	363, 843, 855, 1080, 1310, 1487, 1507, 1546, 1985
BstSFI	CTRYAG	4 cut(s)	1839, 1972, 2007, 2058
BstSLI	GKGCMC	1 cut(s)	1498
BstSNI	TACGTA	1 cut(s)	2099
BstV1I	GCAGC	1 cut(s)	2094
BstX2I	RGATCY	3 cut(s)	497, 852, 1514
BstYI	RGATCY	3 cut(s)	497, 852, 1514
BsuRI	GGCC	5 cut(s)	63, 363, 1540, 1650, 2073
BtgI	CCRYGG	3 cut(s)	122, 1273, 2140
BtgZI	GCGATG	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	1459, 2134
BtsI	GCAGTG	2 cut(s)	1101, 2164
BtsIMutI	CAGTG	3 cut(s)	966, 1101, 2164
Cac8I	GCNNGC	3 cut(s)	254, 395, 591
CaiI	CAGNNNCTG	2 cut(s)	766, 1168
CciI	TCATGA	2 cut(s)	874, 1261
CfoI	GCGC	3 cut(s)	42, 135, 1560
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	5 cut(s)	361, 847, 1226, 1505, 1538
CseI	GACGC	3 cut(s)	1112, 1436, 1850
CsiI	ACCWGGT	2 cut(s)	843, 1080
Csp6I	GTAC	5 cut(s)	247, 1056, 1281, 1361, 2096
CviQI	GTAC	5 cut(s)	247, 1056, 1281, 1361, 2096
DdeI	CTNAG	6 cut(s)	552, 698, 721, 1073, 1194, 1857
DinI	GGCGCC	1 cut(s)	41
DraIII	CACNNNGTG	2 cut(s)	1031, 1502
EaeI	YGGCCR	1 cut(s)	2071
Eam1104I	CTCTTC	6 cut(s)	160, 905, 961, 1351, 2016, 2118
EarI	CTCTTC	6 cut(s)	160, 905, 961, 1351, 2016, 2118
EciI	GGCGGA	1 cut(s)	1720
Ecl136II	GAGCTC	1 cut(s)	536
Eco105I	TACGTA	1 cut(s)	2099
Eco130I	CCWWGG	4 cut(s)	1273, 1730, 1887, 2140
Eco24I	GRGCYC	5 cut(s)	382, 538, 1594, 1856, 2117
Eco47I	GGWCC	3 cut(s)	847, 1226, 1505
Eco53kI	GAGCTC	1 cut(s)	536
Eco57I	CTGAAG	4 cut(s)	666, 942, 1227, 2142
Eco72I	CACGTG	1 cut(s)	1502
Eco88I	CYCGRG	5 cut(s)	347, 407, 612, 1593, 1953
EcoICRI	GAGCTC	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	1551
EcoO109I	RGGNCCY	2 cut(s)	1226, 1538
EcoRI	GAATTC	1 cut(s)	1014
EcoRII	CCWGG	8 cut(s)	363, 843, 855, 1080, 1487, 1507, 1546, 1985
EcoT14I	CCWWGG	4 cut(s)	1273, 1730, 1887, 2140
EcoT22I	ATGCAT	4 cut(s)	420, 591, 595, 1210
EcoT38I	GRGCYC	5 cut(s)	382, 538, 1594, 1856, 2117
EgeI	GGCGCC	1 cut(s)	41
EheI	GGCGCC	1 cut(s)	41
ErhI	CCWWGG	4 cut(s)	1273, 1730, 1887, 2140
FaqI	GGGAC	5 cut(s)	691, 1239, 1294, 1625, 1968
FauI	CCCGC	2 cut(s)	1728, 2125
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	5 cut(s)	43, 46, 1937, 2080, 2083
FokI	GGATG	2 cut(s)	1466, 2141
FriOI	GRGCYC	5 cut(s)	382, 538, 1594, 1856, 2117
Fsp4HI	GCNGC	5 cut(s)	43, 46, 1937, 2080, 2083
FspBI	CTAG	2 cut(s)	260, 1817
GlaI	GCGC	3 cut(s)	41, 134, 1559
GluI	GCNGC	5 cut(s)	43, 46, 1937, 2080, 2083
GsaI	CCCAGC	1 cut(s)	1611
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	2 cut(s)	43, 1561
HaeIII	GGCC	5 cut(s)	63, 363, 1540, 1650, 2073
HapII	CCGG	7 cut(s)	141, 222, 266, 281, 394, 1312, 1849
HgaI	GACGC	3 cut(s)	1112, 1436, 1850
HhaI	GCGC	3 cut(s)	42, 135, 1560
Hin1I	GRCGYC	3 cut(s)	40, 939, 1123
Hin6I	GCGC	3 cut(s)	40, 133, 1558
HinP1I	GCGC	3 cut(s)	40, 133, 1558
HpaII	CCGG	7 cut(s)	141, 222, 266, 281, 394, 1312, 1849
Hpy166II	GTNNAC	6 cut(s)	53, 758, 819, 862, 1283, 1574
Hpy8I	GTNNAC	6 cut(s)	53, 758, 819, 862, 1283, 1574
Hpy99I	CGWCG	2 cut(s)	113, 1866
HpyAV	CCTTC	3 cut(s)	319, 1242, 1893
HpyCH4III	ACNGT	3 cut(s)	1023, 1781, 1976
HpyCH4IV	ACGT	5 cut(s)	939, 1363, 1501, 1699, 2098
HpyF10VI	GCNNNNNNNGC	8 cut(s)	39, 141, 200, 329, 1427, 1493, 2079, 2088
HpyF3I	CTNAG	6 cut(s)	552, 698, 721, 1073, 1194, 1857
HpySE526I	ACGT	5 cut(s)	939, 1363, 1501, 1699, 2098
Hsp92I	GRCGYC	3 cut(s)	40, 939, 1123
HspAI	GCGC	3 cut(s)	40, 133, 1558
KasI	GGCGCC	1 cut(s)	39
KflI	GGGWCCC	1 cut(s)	1226
Kpn2I	TCCGGA	2 cut(s)	265, 280
KroI	GCCGGC	1 cut(s)	393
KroNI	GCCGGC	1 cut(s)	395
LmnI	GCTCC	8 cut(s)	130, 268, 283, 385, 435, 1464, 1851, 2112
Lsp1109I	GCAGC	1 cut(s)	2094
LweI	GCATC	7 cut(s)	405, 1155, 1195, 1217, 1408, 2005, 2034
MabI	ACCWGGT	2 cut(s)	843, 1080
MaeI	CTAG	2 cut(s)	260, 1817
MaeII	ACGT	5 cut(s)	939, 1363, 1501, 1699, 2098
MaeIII	GTNAC	7 cut(s)	604, 1023, 1076, 1709, 1757, 1775, 1901
MbiI	CCGCTC	2 cut(s)	161, 1936
MfeI	CAATTG	1 cut(s)	1567
MflI	RGATCY	3 cut(s)	497, 852, 1514
MhlI	GDGCHC	7 cut(s)	382, 538, 546, 1498, 1594, 1856, 2117
MlsI	TGGCCA	1 cut(s)	2073
MluNI	TGGCCA	1 cut(s)	2073
Mly113I	GGCGCC	1 cut(s)	40
MlyI	GAGTC	5 cut(s)	318, 362, 1717, 1822, 1990
MmeI	TCCRAC	4 cut(s)	132, 429, 786, 879
Mox20I	TGGCCA	1 cut(s)	2073
Mph1103I	ATGCAT	4 cut(s)	420, 591, 595, 1210
MroI	TCCGGA	2 cut(s)	265, 280
MroNI	GCCGGC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	2073
MseI	TTAA	7 cut(s)	489, 1130, 1181, 1215, 1404, 1472, 2170
MslI	CAYNNNNRTG	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	2073
MspA1I	CMGCKG	2 cut(s)	573, 2120
MspI	CCGG	7 cut(s)	141, 222, 266, 281, 394, 1312, 1849
MspR9I	CCNGG	9 cut(s)	365, 845, 857, 1082, 1312, 1489, 1509, 1548, 1987
MunI	CAATTG	1 cut(s)	1567
MvaI	CCWGG	8 cut(s)	365, 845, 857, 1082, 1489, 1509, 1548, 1987
MwoI	GCNNNNNNNGC	8 cut(s)	39, 141, 200, 329, 1427, 1493, 2079, 2088
NaeI	GCCGGC	1 cut(s)	395
NarI	GGCGCC	1 cut(s)	40
NciI	CCSGG	1 cut(s)	1312
NcoI	CCATGG	2 cut(s)	1273, 2140
NdeI	CATATG	1 cut(s)	595
NgoMIV	GCCGGC	1 cut(s)	393
NmeAIII	GCCGAG	1 cut(s)	1099
NmuCI	GTSAC	4 cut(s)	1023, 1076, 1709, 1901
NsiI	ATGCAT	4 cut(s)	420, 591, 595, 1210
NspI	RCATGY	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	593
PaeR7I	CTCGAG	3 cut(s)	347, 612, 1593
PagI	TCATGA	2 cut(s)	874, 1261
PasI	CCCWGGG	1 cut(s)	1986
PcsI	WCGNNNNNNNCGW	1 cut(s)	1960
PdiI	GCCGGC	1 cut(s)	395
PfeI	GAWTC	5 cut(s)	104, 646, 686, 927, 2162
Pfl23II	CGTACG	1 cut(s)	2095
PflFI	GACNNNGTC	2 cut(s)	845, 1082
PfoI	TCCNGGA	1 cut(s)	1310
PkrI	GCNGC	5 cut(s)	44, 47, 1938, 2081, 2084
PleI	GAGTC	5 cut(s)	317, 362, 1716, 1821, 1989
PluTI	GGCGCC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	1502
PmlI	CACGTG	1 cut(s)	1502
PpsI	GAGTC	5 cut(s)	317, 362, 1716, 1821, 1989
Ppu21I	YACGTR	3 cut(s)	1364, 1502, 2099
PpuMI	RGGWCCY	1 cut(s)	1226
PshBI	ATTAAT	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	1226
Psp6I	CCWGG	8 cut(s)	363, 843, 855, 1080, 1487, 1507, 1546, 1985
PspCI	CACGTG	1 cut(s)	1502
PspFI	CCCAGC	1 cut(s)	1607
PspGI	CCWGG	8 cut(s)	363, 843, 855, 1080, 1487, 1507, 1546, 1985
PspLI	CGTACG	1 cut(s)	2095
PspPI	GGNCC	5 cut(s)	361, 847, 1226, 1505, 1538
PspPPI	RGGWCCY	1 cut(s)	1226
PspXI	VCTCGAGB	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	1843
PstNI	CAGNNNCTG	2 cut(s)	766, 1168
PsuI	RGATCY	3 cut(s)	497, 852, 1514
PsyI	GACNNNGTC	2 cut(s)	845, 1082
PvuII	CAGCTG	1 cut(s)	573
RsaI	GTAC	5 cut(s)	248, 1057, 1282, 1362, 2097
RsaNI	GTAC	5 cut(s)	247, 1056, 1281, 1361, 2096
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	538
SaqAI	TTAA	7 cut(s)	489, 1130, 1181, 1215, 1404, 1472, 2170
SatI	GCNGC	5 cut(s)	43, 46, 1937, 2080, 2083
Sau96I	GGNCC	5 cut(s)	361, 847, 1226, 1505, 1538
SchI	GAGTC	5 cut(s)	318, 362, 1717, 1822, 1990
ScrFI	CCNGG	9 cut(s)	365, 845, 857, 1082, 1312, 1489, 1509, 1548, 1987
SduI	GDGCHC	7 cut(s)	382, 538, 546, 1498, 1594, 1856, 2117
SexAI	ACCWGGT	2 cut(s)	843, 1080
SfaNI	GCATC	7 cut(s)	405, 1155, 1195, 1217, 1408, 2005, 2034
SfcI	CTRYAG	4 cut(s)	1839, 1972, 2007, 2058
SfoI	GGCGCC	1 cut(s)	41
Sfr274I	CTCGAG	3 cut(s)	347, 612, 1593
SinI	GGWCC	3 cut(s)	847, 1226, 1505
SlaI	CTCGAG	3 cut(s)	347, 612, 1593
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	5 cut(s)	347, 539, 612, 750, 1593
SmoI	CTYRAG	5 cut(s)	347, 539, 612, 750, 1593
SnaBI	TACGTA	1 cut(s)	2099
SphI	GCATGC	1 cut(s)	593
SsiI	CCGC	9 cut(s)	43, 46, 159, 1270, 1705, 1735, 1936, 2079, 2118
SspDI	GGCGCC	1 cut(s)	39
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	2 cut(s)	260, 1817
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	9 cut(s)	363, 843, 855, 1080, 1310, 1487, 1507, 1546, 1985
StyI	CCWWGG	4 cut(s)	1273, 1730, 1887, 2140
TaaI	ACNGT	3 cut(s)	1023, 1781, 1976
TaiI	ACGT	5 cut(s)	942, 1366, 1504, 1702, 2101
TaqI	TCGA	8 cut(s)	16, 167, 307, 348, 613, 1111, 1594, 1747
TauI	GCSGC	4 cut(s)	45, 48, 1939, 2082
TfiI	GAWTC	5 cut(s)	104, 646, 686, 927, 2162
Tru1I	TTAA	7 cut(s)	489, 1130, 1181, 1215, 1404, 1472, 2170
Tru9I	TTAA	7 cut(s)	489, 1130, 1181, 1215, 1404, 1472, 2170
TscAI	CASTG	3 cut(s)	966, 1101, 2164
TseFI	GTSAC	4 cut(s)	1023, 1076, 1709, 1901
TseI	GCWGC	1 cut(s)	2082
Tsp45I	GTSAC	4 cut(s)	1023, 1076, 1709, 1901
TspDTI	ATGAA	3 cut(s)	574, 1104, 1391
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	3 cut(s)	966, 1101, 2164
Tth111I	GACNNNGTC	2 cut(s)	845, 1082
VpaK11BI	GGWCC	3 cut(s)	847, 1226, 1505
VspI	ATTAAT	1 cut(s)	489
XagI	CCTNNNNNAGG	1 cut(s)	1551
XapI	RAATTY	5 cut(s)	515, 782, 1014, 1400, 1481
XbaI	TCTAGA	1 cut(s)	1816
XceI	RCATGY	1 cut(s)	593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1913
XhoI	CTCGAG	3 cut(s)	347, 612, 1593
XspI	CTAG	2 cut(s)	260, 1817
ZraI	GACGTC	1 cut(s)	940
Zsp2I	ATGCAT	4 cut(s)	420, 591, 595, 1210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.