FvH4_7g20720

isoform X1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
16789322 .. 16793910
4589 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20720.t11

Sequence Viewer

Length: 1128 bp
ATGCAACTAGCTCCGGATAATCTTGCTCCGGAGTTGAGGGATTTGATTGGTGATAGCGTCGGCGATGTTGCTAAGGTCGCCGTTGTGATTTTGTGTGAGCAGAAAATGGGCCAGGGCTCTGAATGGGCTCCTTACATCAGCCGGCTTCCTCGCCTTGAGGAGATGCATAGCACAATATTTTGGAGCGAAGATGAGTTGGAGATGATTCGACAGAGCTCTCTGTATCAGGAGACTATTAATCAAAGATCCTTTGTTGAAAAGGAATATTCGGCAATTAGGACAGTTCTTGAGTGCTTTCCTGAAATGTTCCAAAGTATCACCTGCAAGGAATTCATGCATGCATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCAAAAAGGGTTATTCCCTGATTCCTGTTGCAGATTTTTTGAACCATGATGGGACTTCAGAGTCAATTGTGCTGAGTGATGATGACAAACATTTCTCAGAGGTGATTGCTGATCGTAATTATACTCAAGGTGAACAGGTGCTGATAAGATATGGCAAATTTTCAAATGCTACCCTACTGTTGGACTTTGGGTTTACACTTCCATACAACATTCACGACCAGGTCCGGATCCAGGTAAACAGACCTCATCATGATGCTCTTTGTGATTTGAAGTTGGAACTTTTGAAGAGACATCACAGACCAATCAACAATGACGTCAACGGTTTCAACTCTTCAGTGGATTGTTTCACAATCAAGGAAGTGAGATCTGGTAGTGAAAAAGGGAAAGGAATTCCACATTCACTTCGTGCATTTGCTCGTGTCCTACGTTGTACCTCTTGTGAAGAGCTTAGTGACCTGGCCAATGAAGCAGCAGAACATGATGGTCGATTGGCTCGGCGTCCTTTAACTAACAGAAGCAGAGAGATTGAAGCACATCAGATGTTGATGGAAGTATTAACCCAATTGGCTGAGGATTGTGATGCATCTATTAAGTCTCTAGGACCCGTAAGTTCTCCTGCCATGTGTGAAAGGCTCTCTCTCCGGACACAAATGGCTCGCGATCTCCTTAATGGTGAGATTCGTATCCTCAATTCCGCGCGTGCATGGCTTTTACACTACTGCACAACCTTGATTGCGACAAACTGCCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

376

Amino Acids

42.56

Weight (kDa)

5.72

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 329
AasI GACNNNNNNGTC 1 cut(s) 433
AatII GACGTC 1 cut(s) 690
Acc36I ACCTGC 1 cut(s) 329
AccII CGCG 3 cut(s) 1032, 1070, 1072
AccIII TCCGGA 4 cut(s) 13, 28, 597, 1014
AciI CCGC 1 cut(s) 1068
AclWI GGATC 3 cut(s) 240, 595, 608
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 3 cut(s) 329, 530, 762
AcuI CTGAAG 2 cut(s) 414, 690
AcyI GRCGYC 2 cut(s) 687, 871
AdeI CACNNNGTG 1 cut(s) 779
AfaI GTAC 1 cut(s) 805
AfiI CCNNNNNNNGG 2 cut(s) 553, 604
AgsI TTSAA 7 cut(s) 257, 415, 537, 643, 658, 700, 902
AjnI CCWGG 4 cut(s) 111, 591, 603, 828
AluBI AGCT 3 cut(s) 11, 216, 820
AluI AGCT 3 cut(s) 11, 216, 820
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 3 cut(s) 224, 655, 972
AlwI GGATC 3 cut(s) 240, 595, 608
AlwNI CAGNNNCTG 1 cut(s) 514
Ama87I CYCGRG 1 cut(s) 360
Aor13HI TCCGGA 4 cut(s) 13, 28, 597, 1014
AoxI GGCC 2 cut(s) 109, 831
ApeKI GCWGC 1 cut(s) 842
ApoI RAATTY 3 cut(s) 329, 530, 762
AseI ATTAAT 1 cut(s) 237
AspLEI GCGC 1 cut(s) 1072
AspS9I GGNCC 3 cut(s) 109, 595, 974
AsuHPI GGTGA 5 cut(s) 62, 310, 487, 515, 1058
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 2 cut(s) 595, 974
BalI TGGCCA 1 cut(s) 833
BamHI GGATCC 1 cut(s) 600
BanII GRGCYC 3 cut(s) 119, 130, 218
BauI CACGAG 1 cut(s) 789
Bbv12I GWGCWC 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 942
BbvI GCAGC 1 cut(s) 854
BccI CCATC 3 cut(s) 416, 848, 913
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 4 cut(s) 113, 593, 605, 830
BciVI GTATCC 1 cut(s) 1067
BcoDI GTCTC 3 cut(s) 224, 655, 972
BfaI CTAG 2 cut(s) 8, 971
BfuAI ACCTGC 1 cut(s) 329
BfuI GTATCC 1 cut(s) 1067
BglII AGATCT 1 cut(s) 737
BisI GCNGC 1 cut(s) 843
BlsI GCNGC 1 cut(s) 844
Bme1390I CCNGG 4 cut(s) 113, 593, 605, 830
Bme18I GGWCC 2 cut(s) 595, 974
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 3 cut(s) 109, 595, 974
BmiI GGNNCC 3 cut(s) 129, 602, 976
BmrFI CCNGG 4 cut(s) 113, 593, 605, 830
BmsI GCATC 4 cut(s) 153, 616, 943, 965
Bpu10I CCTNAGC 2 cut(s) 72, 942
BpuEI CTTGAG 3 cut(s) 176, 308, 483
BsaBI GATNNNNATC 1 cut(s) 1055
BsaHI GRCGYC 2 cut(s) 687, 871
BsaJI CCNNGG 1 cut(s) 112
BsaWI WCCGGW 4 cut(s) 13, 28, 597, 1014
Bsc4I CCNNNNNNNGG 2 cut(s) 553, 604
Bse118I RCCGGY 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 1055
BseAI TCCGGA 4 cut(s) 13, 28, 597, 1014
BseBI CCWGG 4 cut(s) 113, 593, 605, 830
BseDI CCNNGG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 1055
BseLI CCNNNNNNNGG 2 cut(s) 553, 604
BseMII CTCAG 3 cut(s) 437, 483, 933
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 854
BsgI GTGCAG 1 cut(s) 1078
Bsh1236I CGCG 3 cut(s) 1032, 1070, 1072
BshFI GGCC 2 cut(s) 111, 833
BsiHKAI GWGCWC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 5 cut(s) 14, 29, 142, 598, 1015
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 2 cut(s) 553, 604
BsmAI GTCTC 3 cut(s) 224, 655, 972
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 2 cut(s) 111, 833
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 3 cut(s) 119, 130, 218
Bsp13I TCCGGA 4 cut(s) 13, 28, 597, 1014
Bsp143I GATC 5 cut(s) 245, 484, 600, 737, 1033
Bsp68I TCGCGA 1 cut(s) 1032
BspACI CCGC 1 cut(s) 1068
BspANI GGCC 2 cut(s) 111, 833
BspCNI CTCAG 3 cut(s) 438, 482, 934
BspEI TCCGGA 4 cut(s) 13, 28, 597, 1014
BspFNI CGCG 3 cut(s) 1032, 1070, 1072
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 3 cut(s) 129, 602, 976
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 3 cut(s) 240, 595, 608
BspQI GCTCTTC 1 cut(s) 810
BsrFI RCCGGY 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 5 cut(s) 245, 484, 600, 737, 1033
BssNI GRCGYC 2 cut(s) 687, 871
BssSI CACGAG 1 cut(s) 789
Bst2BI CACGAG 1 cut(s) 789
Bst2UI CCWGG 4 cut(s) 113, 593, 605, 830
Bst4CI ACNGT 3 cut(s) 283, 552, 695
Bst6I CTCTTC 3 cut(s) 653, 709, 810
BstACI GRCGYC 2 cut(s) 687, 871
BstC8I GCNNGC 4 cut(s) 143, 339, 1030, 1074
BstDEI CTNAG 5 cut(s) 72, 446, 469, 821, 942
BstFNI CGCG 3 cut(s) 1032, 1070, 1072
BstHHI GCGC 1 cut(s) 1072
BstKTI GATC 5 cut(s) 248, 487, 603, 740, 1036
BstMAI GTCTC 3 cut(s) 224, 655, 972
BstMBI GATC 5 cut(s) 245, 484, 600, 737, 1033
BstMWI GCNNNNNNNGC 3 cut(s) 77, 839, 1078
BstNI CCWGG 4 cut(s) 113, 593, 605, 830
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 4 cut(s) 111, 591, 603, 828
BstUI CGCG 3 cut(s) 1032, 1070, 1072
BstV1I GCAGC 1 cut(s) 854
BstX2I RGATCY 3 cut(s) 245, 600, 737
BstYI RGATCY 3 cut(s) 245, 600, 737
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 2 cut(s) 111, 833
BtgZI GCGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 714
BtuMI TCGCGA 1 cut(s) 1032
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 4 cut(s) 143, 339, 1030, 1074
CaiI CAGNNNCTG 1 cut(s) 514
CciI TCATGA 1 cut(s) 622
CfoI GCGC 1 cut(s) 1072
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 3 cut(s) 109, 595, 974
CseI GACGC 2 cut(s) 46, 860
CsiI ACCWGGT 1 cut(s) 591
Csp6I GTAC 1 cut(s) 804
CviAII CATG 8 cut(s) 334, 338, 366, 419, 623, 851, 994, 1077
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 5 cut(s) 72, 446, 469, 821, 942
DpnI GATC 5 cut(s) 247, 486, 602, 739, 1035
DpnII GATC 5 cut(s) 245, 484, 600, 737, 1033
DraIII CACNNNGTG 1 cut(s) 779
DrdI GACNNNNNNGTC 1 cut(s) 433
DseDI GACNNNNNNGTC 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 3 cut(s) 653, 709, 810
EarI CTCTTC 3 cut(s) 653, 709, 810
Ecl136II GAGCTC 1 cut(s) 216
Eco24I GRGCYC 3 cut(s) 119, 130, 218
Eco47I GGWCC 2 cut(s) 595, 974
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 414, 690
Eco88I CYCGRG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 974
EcoRI GAATTC 2 cut(s) 329, 762
EcoRII CCWGG 4 cut(s) 111, 591, 603, 828
EcoT22I ATGCAT 4 cut(s) 168, 339, 343, 958
EcoT38I GRGCYC 3 cut(s) 119, 130, 218
FaeI CATG 8 cut(s) 337, 341, 369, 422, 626, 854, 997, 1080
FaqI GGGAC 1 cut(s) 439
FatI CATG 8 cut(s) 333, 337, 365, 418, 622, 850, 993, 1076
FauNDI CATATG 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 843
FriOI GRGCYC 3 cut(s) 119, 130, 218
Fsp4HI GCNGC 1 cut(s) 843
FspBI CTAG 2 cut(s) 8, 971
GlaI GCGC 1 cut(s) 1071
GluI GCNGC 1 cut(s) 843
HaeIII GGCC 2 cut(s) 111, 833
HapII CCGG 5 cut(s) 14, 29, 142, 598, 1015
HgaI GACGC 2 cut(s) 46, 860
HhaI GCGC 1 cut(s) 1072
Hin1I GRCGYC 2 cut(s) 687, 871
Hin1II CATG 8 cut(s) 337, 341, 369, 422, 626, 854, 997, 1080
Hin6I GCGC 1 cut(s) 1070
HinP1I GCGC 1 cut(s) 1070
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HinfI GANTC 4 cut(s) 205, 394, 434, 1051
HpaII CCGG 5 cut(s) 14, 29, 142, 598, 1015
HphI GGTGA 5 cut(s) 62, 310, 487, 515, 1058
Hpy166II GTNNAC 4 cut(s) 506, 567, 610, 691
Hpy188I TCNGA 4 cut(s) 121, 433, 472, 912
Hpy8I GTNNAC 4 cut(s) 506, 567, 610, 691
Hpy99I CGWCG 1 cut(s) 62
HpyCH4III ACNGT 3 cut(s) 283, 552, 695
HpyCH4IV ACGT 2 cut(s) 687, 799
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 839, 1078
HpyF3I CTNAG 5 cut(s) 72, 446, 469, 821, 942
HpySE526I ACGT 2 cut(s) 687, 799
Hsp92I GRCGYC 2 cut(s) 687, 871
Hsp92II CATG 8 cut(s) 337, 341, 369, 422, 626, 854, 997, 1080
HspAI GCGC 1 cut(s) 1070
Kpn2I TCCGGA 4 cut(s) 13, 28, 597, 1014
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
Kzo9I GATC 5 cut(s) 245, 484, 600, 737, 1033
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 4 cut(s) 16, 31, 133, 183
Lsp1109I GCAGC 1 cut(s) 854
LweI GCATC 4 cut(s) 153, 616, 943, 965
MabI ACCWGGT 1 cut(s) 591
MaeI CTAG 2 cut(s) 8, 971
MaeII ACGT 2 cut(s) 687, 799
MaeIII GTNAC 2 cut(s) 352, 824
MalI GATC 5 cut(s) 247, 486, 602, 739, 1035
MboI GATC 5 cut(s) 245, 484, 600, 737, 1033
MboII GAAGA 4 cut(s) 200, 670, 696, 827
MfeI CAATTG 2 cut(s) 438, 935
MflI RGATCY 3 cut(s) 245, 600, 737
MhlI GDGCHC 3 cut(s) 119, 130, 218
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 8 cut(s) 273, 329, 438, 490, 530, 762, 935, 1063
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 3 cut(s) 177, 534, 627
MnlI CCTC 8 cut(s) 30, 151, 159, 466, 627, 817, 937, 1070
Mox20I TGGCCA 1 cut(s) 833
Mph1103I ATGCAT 4 cut(s) 168, 339, 343, 958
MroI TCCGGA 4 cut(s) 13, 28, 597, 1014
MroNI GCCGGC 1 cut(s) 141
MscI TGGCCA 1 cut(s) 833
MseI TTAA 5 cut(s) 237, 878, 929, 963, 1041
MslI CAYNNNNRTG 2 cut(s) 342, 624
Msp20I TGGCCA 1 cut(s) 833
MspI CCGG 5 cut(s) 14, 29, 142, 598, 1015
MspR9I CCNGG 4 cut(s) 113, 593, 605, 830
MunI CAATTG 2 cut(s) 438, 935
MvaI CCWGG 4 cut(s) 113, 593, 605, 830
MvnI CGCG 3 cut(s) 1032, 1070, 1072
MwoI GCNNNNNNNGC 3 cut(s) 77, 839, 1078
NaeI GCCGGC 1 cut(s) 143
NdeI CATATG 1 cut(s) 343
NdeII GATC 5 cut(s) 245, 484, 600, 737, 1033
NgoMIV GCCGGC 1 cut(s) 141
NlaIII CATG 8 cut(s) 337, 341, 369, 422, 626, 854, 997, 1080
NlaIV GGNNCC 3 cut(s) 129, 602, 976
NmeAIII GCCGAG 1 cut(s) 847
NmuCI GTSAC 1 cut(s) 824
NruI TCGCGA 1 cut(s) 1032
NsiI ATGCAT 4 cut(s) 168, 339, 343, 958
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PaeR7I CTCGAG 1 cut(s) 360
PagI TCATGA 1 cut(s) 622
PaqCI CACCTGC 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 796
PdiI GCCGGC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 205, 394, 1051
PflFI GACNNNGTC 1 cut(s) 593
PkrI GCNGC 1 cut(s) 844
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 974
PshBI ATTAAT 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 974
Psp6I CCWGG 4 cut(s) 111, 591, 603, 828
PspGI CCWGG 4 cut(s) 111, 591, 603, 828
PspN4I GGNNCC 3 cut(s) 129, 602, 976
PspPI GGNCC 3 cut(s) 109, 595, 974
PspPPI RGGWCCY 1 cut(s) 974
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 3 cut(s) 245, 600, 737
PsyI GACNNNGTC 1 cut(s) 593
RruI TCGCGA 1 cut(s) 1032
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 2 cut(s) 342, 624
SacI GAGCTC 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 5 cut(s) 237, 878, 929, 963, 1041
SatI GCNGC 1 cut(s) 843
Sau3AI GATC 5 cut(s) 245, 484, 600, 737, 1033
Sau96I GGNCC 3 cut(s) 109, 595, 974
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 4 cut(s) 113, 593, 605, 830
SduI GDGCHC 3 cut(s) 119, 130, 218
SexAI ACCWGGT 1 cut(s) 591
SfaNI GCATC 4 cut(s) 153, 616, 943, 965
Sfr274I CTCGAG 1 cut(s) 360
SinI GGWCC 2 cut(s) 595, 974
SlaI CTCGAG 1 cut(s) 360
SmiMI CAYNNNNRTG 2 cut(s) 342, 624
SmlI CTYRAG 4 cut(s) 155, 287, 360, 498
SmoI CTYRAG 4 cut(s) 155, 287, 360, 498
SphI GCATGC 1 cut(s) 341
Sse9I AATT 8 cut(s) 273, 329, 438, 490, 530, 762, 935, 1063
SsiI CCGC 1 cut(s) 1068
SspI AATATT 2 cut(s) 177, 266
SspMI CTAG 2 cut(s) 8, 971
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 4 cut(s) 111, 591, 603, 828
TaaI ACNGT 3 cut(s) 283, 552, 695
TaiI ACGT 2 cut(s) 690, 802
TaqI TCGA 3 cut(s) 208, 361, 859
TasI AATT 8 cut(s) 273, 329, 438, 490, 530, 762, 935, 1063
TfiI GAWTC 3 cut(s) 205, 394, 1051
Tru1I TTAA 5 cut(s) 237, 878, 929, 963, 1041
Tru9I TTAA 5 cut(s) 237, 878, 929, 963, 1041
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 1 cut(s) 842
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 2 cut(s) 322, 852
TspRI CASTG 1 cut(s) 714
Tth111I GACNNNGTC 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 595, 974
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 3 cut(s) 329, 530, 762
XceI RCATGY 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 360
XspI CTAG 2 cut(s) 8, 971
ZraI GACGTC 1 cut(s) 688
Zsp2I ATGCAT 4 cut(s) 168, 339, 343, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.