Rh1AG327600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000846
Physical Location & Seq
Reverse (-)
56042392 .. 56050192
7801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG327600.1

Sequence Viewer

Length: 2169 bp
ATGCTACTGGTAGCTCGACAATTCAGCCATTGCTGGTGGCGCCGCCGCCGTCCACATATCGGCCTCTCCCACACTCCACTCACCAACCTCAACTTCCACTCCGAATCCGACGACTTCTTGCCGTGGCTGGAGCGCAAGTCCGGCACCGCAATCTCTTCCGCGCTTTCGATAGGGAAATCCACTCTCGGAACGGCTCTCTTTGCTTCCAAGACCATAAGAGCCGGAGACTGCATATTGAAAGTTCCGTACAGCGTGCAACTAGCTCCGGATAATCTTGCTCCGGAATTGAGAGCTCTGTTAGGTGATCGAGTCGGTGATGTTGCGAAGGTCGTCATTGTCATTTTGCTTGAGCAGAAAATGGGCCAGGACTCTGAATGGGCTCCTTACATCAGCCGGCTTCCTCGCCCCGAGGAGATGCATAGCACAATATTTTGGAGCGAAGATGAGTTGGAGATGATTTGTCGAAGCTCTCTGTATCAGGAGACAATTAATCAAAGATCCCTTGTTGAGAAGGAATTTTTGGCAGTTAGGAGAGCTCTTGAGCACTTTCCTGAGATGTTCCAAAGTATCAGCTGTAACTCCTGTAAGGATTTCATGCATGCATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCAGAAAGGGTTATTCCCTGATTCCATTTGCAGATTTTTTGAACCATGATGGGACTTCAGAATCAGTTGTGCTGAGTGATGATGACAAACATTTCTCTGAGGTGATTGCTGATCGTAATTATGCTCAAGGTGAACAGGTGCTGATAAGATATGGCAAATTTTCAAACGCTACCCTGCTGTTGGACTTTGGGTTTACACTTCCATACAACATTCACGACCAGGTCCAGATCCAGGTAAACATACCTCATCATGATATTCTTCGTGATTTGAAGTTGGAACTTTTGAAGAGACATCATAGACCAATCAACAATGACGTCAATGGTTTCAACTCTTCAGTGGATTGTTTCACAATCAAGGAAGTGAAATCTGGTAGTGGAAAGGGGAAAGGAATTCCACAGTCACTTCGTGCATTTGCTCGTGTCCTATGTTGTACCTCGTGTGAAGAACTTAGTGACCTGGCCAATGAAGCAGTGGAACATGATGGTCGATTGGCTCGGCGTCCTTTAACAAATAGAAGCAGAGAGATTGAAGCACATCAGATGCTGATGGAAAAATTAACCCAATTAGCTGAGGATTGTGAGTCTCTGGGACCCCCTTCGTCTTCTTCAGATAAAATGCCTCGTCATGATGACCGCCACGGTGGTACACGGCTCTATGTTGGTCGCTTGTCGTCCCGGACAAGATCACGGGAACTGGAAGATGTATTCAGCAGATATGGAAGAGTACGTGATGTGGATATGAAGCGTGATTTCGCCTTTGTTGAATTTAATGATCCCCGTGATGCTGATGACGCAAGATATAGCCTGAATGGTCGGGATGTTGATGGGAGCCGTTTAATTGTGGAATTTGCCAGGGGGGCACCACGTGGTCCAGGTGGATCCCGTGAGTATCTGGGTAGAGGACCTCCTCCTGGTTCAGGGCGCTGTTTCAATTGTGGACTTGATGGGCACTGGGCTCGAGATTGCAAAGCTGGGGACTGGAAGAATAAGTGTTATCGCTGTGGGGAACGAGGCCACATTGAAAGAAATTGTCAGAACAGCCCGAAGAAAACCTCCTCCAAACGTGGGCGGAGTCACTCACGCTCACCAAGTCCAAGGCGGGGCAGAAGTCGAAGCCGTAGTTACAGCAGGGGTCATAGTTACAGTCAATCAAGATCACCTGTGAGGAGAGAAAGGAGTCTAGAGAGAAGATCAAGAAGTCCTGCAGACAGCCGGAGCCCTAAGCGTCGCAGGGCTTCTCCACCACCTTCCAAGGGGAGGAAGCGTGACCAATCTCCCGATGGGAGAAGCCCACAAGAGCGGCGTAGTCTCTCCCCTCAGGATCGCCGATCTGACTACAGTAGGAGTCCCAGGGGAAAGAGTAGAAGCCCTACAGGTGATGCCGAAGAGAAAAGCAATGGTGATAAGATGCACAGAAGTCCTGTAGAAGAAAATGGCCATAGCCGCAGCCCAAGCCCCGTACGTAGAGGTGACAGGAGCCCCGTTGAAGAGGATGATGATAACCACGGTTCTCCAAGAGGCAGTGAATCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

722

Amino Acids

81.75

Weight (kDa)

9.46

Isoelectric Point (pI)

74.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 429 - 490 1.1e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 951
AccB1I GGYRCC 3 cut(s) 39, 143, 1492
AccBSI CCGCTC 1 cut(s) 1933
AccII CGCG 1 cut(s) 161
AccIII TCCGGA 2 cut(s) 265, 280
AciI CCGC 9 cut(s) 43, 46, 147, 159, 1267, 1702, 1732, 1933, 2077
AclWI GGATC 6 cut(s) 492, 856, 1400, 1506, 1519, 1962
AcoI YGGCCR 2 cut(s) 1092, 2068
AcsI RAATTY 5 cut(s) 515, 791, 1023, 1397, 1478
AcuI CTGAAG 3 cut(s) 675, 951, 1224
AcvI CACGTG 1 cut(s) 1499
AcyI GRCGYC 3 cut(s) 40, 948, 1132
AdeI CACNNNGTG 2 cut(s) 1040, 1499
AfaI GTAC 5 cut(s) 248, 1066, 1279, 1359, 2094
AfiI CCNNNNNNNGG 9 cut(s) 59, 814, 865, 1544, 1550, 1698, 1733, 1886, 1890
AjnI CCWGG 8 cut(s) 363, 852, 864, 1089, 1484, 1504, 1543, 1982
AjuI GAANNNNNNNTTGG 4 cut(s) 77, 109, 503, 535
AluBI AGCT 9 cut(s) 14, 263, 293, 468, 536, 573, 1202, 1604, 2165
AluI AGCT 9 cut(s) 14, 263, 293, 468, 536, 573, 1202, 1604, 2165
Alw21I GWGCWC 3 cut(s) 295, 538, 546
Alw26I GTCTC 5 cut(s) 219, 476, 916, 1221, 1946
AlwI GGATC 6 cut(s) 492, 856, 1400, 1506, 1519, 1962
AlwNI CAGNNNCTG 2 cut(s) 775, 1177
Ama87I CYCGRG 3 cut(s) 407, 621, 1590
Aor13HI TCCGGA 2 cut(s) 265, 280
AoxI GGCC 5 cut(s) 61, 361, 1092, 1645, 2068
ApeKI GCWGC 1 cut(s) 2079
ApoI RAATTY 5 cut(s) 515, 791, 1023, 1397, 1478
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 4 cut(s) 42, 135, 163, 1557
AspS9I GGNCC 5 cut(s) 361, 856, 1223, 1502, 1535
AsuC2I CCSGG 1 cut(s) 1309
AvaI CYCGRG 3 cut(s) 407, 621, 1590
AvaII GGWCC 4 cut(s) 856, 1223, 1502, 1535
AxyI CCTNAGG 1 cut(s) 1950
BaeGI GKGCMC 2 cut(s) 1495, 1584
BalI TGGCCA 2 cut(s) 1094, 2070
BamHI GGATCC 1 cut(s) 1511
BanI GGYRCC 3 cut(s) 39, 143, 1492
BanII GRGCYC 6 cut(s) 295, 382, 538, 1591, 1853, 2114
BauI CACGAG 2 cut(s) 1050, 1069
BbrPI CACGTG 1 cut(s) 1499
BbsI GAAGAC 1 cut(s) 1227
Bbv12I GWGCWC 3 cut(s) 295, 538, 546
BbvCI CCTCAGC 1 cut(s) 1203
BbvI GCAGC 1 cut(s) 2091
BccI CCATC 6 cut(s) 677, 1109, 1174, 1451, 1571, 1907
BceAI ACGGC 6 cut(s) 33, 106, 207, 1298, 1449, 1734
BcgI CGANNNNNNTGC 2 cut(s) 1571, 1605
BciT130I CCWGG 8 cut(s) 365, 854, 866, 1091, 1486, 1506, 1545, 1984
BcnI CCSGG 1 cut(s) 1309
BcoDI GTCTC 5 cut(s) 219, 476, 916, 1221, 1946
BfaI CTAG 2 cut(s) 260, 1814
BfmI CTRYAG 4 cut(s) 1836, 1969, 2004, 2055
BfoI RGCGCY 2 cut(s) 43, 1558
BglI GCCNNNNNGGC 1 cut(s) 1490
BisI GCNGC 5 cut(s) 43, 46, 1934, 2077, 2080
BlsI GCNGC 5 cut(s) 44, 47, 1935, 2078, 2081
Bme1390I CCNGG 9 cut(s) 365, 854, 866, 1091, 1309, 1486, 1506, 1545, 1984
Bme18I GGWCC 4 cut(s) 856, 1223, 1502, 1535
BmeT110I CYCGRG 3 cut(s) 407, 621, 1590
BmgT120I GGNCC 5 cut(s) 361, 856, 1223, 1502, 1535
BmrFI CCNGG 9 cut(s) 365, 854, 866, 1091, 1309, 1486, 1506, 1545, 1984
BmrI ACTGGG 1 cut(s) 1594
BmsI GCATC 5 cut(s) 405, 1164, 1405, 2002, 2031
BmuI ACTGGG 1 cut(s) 1594
BpiI GAAGAC 1 cut(s) 1227
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 2 cut(s) 1203, 1854
BpuEI CTTGAG 3 cut(s) 368, 560, 744
BpuMI CCSGG 1 cut(s) 1309
BsaAI YACGTR 3 cut(s) 1361, 1499, 2096
BsaHI GRCGYC 3 cut(s) 40, 948, 1132
BsaJI CCNNGG 9 cut(s) 122, 408, 1270, 1485, 1727, 1884, 1982, 1983, 2137
BsaWI WCCGGW 2 cut(s) 265, 280
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 122, 152, 1882, 1912
Bsc4I CCNNNNNNNGG 9 cut(s) 59, 814, 865, 1544, 1550, 1698, 1733, 1886, 1890
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 4 cut(s) 12, 1332, 1589, 1616
Bse21I CCTNAGG 1 cut(s) 1950
Bse3DI GCAATG 2 cut(s) 28, 2035
BseAI TCCGGA 2 cut(s) 265, 280
BseBI CCWGG 8 cut(s) 365, 854, 866, 1091, 1486, 1506, 1545, 1984
BseDI CCNNGG 9 cut(s) 122, 408, 1270, 1485, 1727, 1884, 1982, 1983, 2137
BseGI GGATG 2 cut(s) 1456, 2131
BseLI CCNNNNNNNGG 9 cut(s) 59, 814, 865, 1544, 1550, 1698, 1733, 1886, 1890
BseMI GCAATG 2 cut(s) 28, 2035
BseMII CTCAG 5 cut(s) 543, 698, 723, 1194, 1964
BseNI ACTGG 4 cut(s) 12, 1332, 1589, 1616
BseRI GAGGAG 4 cut(s) 425, 1530, 1678, 1813
BseSI GKGCMC 2 cut(s) 1495, 1584
BseXI GCAGC 1 cut(s) 2091
BseYI CCCAGC 1 cut(s) 1604
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 5 cut(s) 63, 363, 1094, 1647, 2070
BshNI GGYRCC 3 cut(s) 39, 143, 1492
BsiHKAI GWGCWC 3 cut(s) 295, 538, 546
BsiHKCI CYCGRG 3 cut(s) 407, 621, 1590
BsiSI CCGG 7 cut(s) 141, 222, 266, 281, 394, 1309, 1846
BsiWI CGTACG 1 cut(s) 2092
BslFI GGGAC 5 cut(s) 700, 1236, 1291, 1622, 1965
BslI CCNNNNNNNGG 9 cut(s) 59, 814, 865, 1544, 1550, 1698, 1733, 1886, 1890
BsmAI GTCTC 5 cut(s) 219, 476, 916, 1221, 1946
BsmFI GGGAC 5 cut(s) 700, 1236, 1291, 1622, 1965
BsnI GGCC 5 cut(s) 63, 363, 1094, 1647, 2070
BsoBI CYCGRG 3 cut(s) 407, 621, 1590
Bsp1286I GDGCHC 9 cut(s) 295, 382, 538, 546, 1495, 1584, 1591, 1853, 2114
Bsp13I TCCGGA 2 cut(s) 265, 280
BspACI CCGC 9 cut(s) 43, 46, 147, 159, 1267, 1702, 1732, 1933, 2077
BspANI GGCC 5 cut(s) 63, 363, 1094, 1647, 2070
BspCNI CTCAG 5 cut(s) 544, 699, 724, 1195, 1963
BspEI TCCGGA 2 cut(s) 265, 280
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 2 cut(s) 883, 1258
BspMAI CTGCAG 1 cut(s) 1840
BspPI GGATC 6 cut(s) 492, 856, 1400, 1506, 1519, 1962
BspT107I GGYRCC 3 cut(s) 39, 143, 1492
BsrBI CCGCTC 1 cut(s) 1933
BsrDI GCAATG 2 cut(s) 28, 2035
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 4 cut(s) 12, 1332, 1589, 1616
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 9 cut(s) 122, 408, 1270, 1485, 1727, 1884, 1982, 1983, 2137
BssNI GRCGYC 3 cut(s) 40, 948, 1132
BssSI CACGAG 2 cut(s) 1050, 1069
BssT1I CCWWGG 2 cut(s) 1727, 1884
Bst2BI CACGAG 2 cut(s) 1050, 1069
Bst2UI CCWGG 8 cut(s) 365, 854, 866, 1091, 1486, 1506, 1545, 1984
Bst4CI ACNGT 5 cut(s) 1032, 1274, 1778, 1973, 2141
Bst6I CTCTTC 6 cut(s) 160, 914, 970, 1348, 2013, 2115
BstACI GRCGYC 3 cut(s) 40, 948, 1132
BstBAI YACGTR 3 cut(s) 1361, 1499, 2096
BstC8I GCNNGC 3 cut(s) 254, 395, 600
BstDEI CTNAG 7 cut(s) 552, 707, 732, 1082, 1203, 1854, 1950
BstDSI CCRYGG 3 cut(s) 122, 1270, 2137
BstENI CCTNNNNNAGG 1 cut(s) 1548
BstF5I GGATG 2 cut(s) 1456, 2131
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 2 cut(s) 43, 1558
BstHHI GCGC 4 cut(s) 42, 135, 163, 1557
BstMAI GTCTC 5 cut(s) 219, 476, 916, 1221, 1946
BstMWI GCNNNNNNNGC 8 cut(s) 39, 141, 200, 1100, 1424, 1490, 2076, 2085
BstNI CCWGG 8 cut(s) 365, 854, 866, 1091, 1486, 1506, 1545, 1984
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 9 cut(s) 363, 852, 864, 1089, 1307, 1484, 1504, 1543, 1982
BstSFI CTRYAG 4 cut(s) 1836, 1969, 2004, 2055
BstSLI GKGCMC 2 cut(s) 1495, 1584
BstSNI TACGTA 1 cut(s) 2096
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 2091
BstV2I GAAGAC 1 cut(s) 1227
BstX2I RGATCY 3 cut(s) 497, 861, 1511
BstYI RGATCY 3 cut(s) 497, 861, 1511
Bsu36I CCTNAGG 1 cut(s) 1950
BsuRI GGCC 5 cut(s) 63, 363, 1094, 1647, 2070
BtgI CCRYGG 3 cut(s) 122, 1270, 2137
BtsCI GGATG 2 cut(s) 1456, 2131
BtsI GCAGTG 2 cut(s) 1110, 2161
BtsIMutI CAGTG 4 cut(s) 975, 1110, 1582, 2161
Cac8I GCNNGC 3 cut(s) 254, 395, 600
CaiI CAGNNNCTG 2 cut(s) 775, 1177
CciI TCATGA 2 cut(s) 883, 1258
CfoI GCGC 4 cut(s) 42, 135, 163, 1557
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 5 cut(s) 361, 856, 1223, 1502, 1535
CseI GACGC 3 cut(s) 1121, 1433, 1847
CsiI ACCWGGT 1 cut(s) 852
Csp6I GTAC 5 cut(s) 247, 1065, 1278, 1358, 2093
CviAII CATG 7 cut(s) 595, 599, 627, 680, 884, 1112, 1259
CviQI GTAC 5 cut(s) 247, 1065, 1278, 1358, 2093
DdeI CTNAG 7 cut(s) 552, 707, 732, 1082, 1203, 1854, 1950
DinI GGCGCC 1 cut(s) 41
DraIII CACNNNGTG 2 cut(s) 1040, 1499
EaeI YGGCCR 2 cut(s) 1092, 2068
Eam1104I CTCTTC 6 cut(s) 160, 914, 970, 1348, 2013, 2115
EarI CTCTTC 6 cut(s) 160, 914, 970, 1348, 2013, 2115
EciI GGCGGA 1 cut(s) 1717
Ecl136II GAGCTC 2 cut(s) 293, 536
Eco105I TACGTA 1 cut(s) 2096
Eco130I CCWWGG 2 cut(s) 1727, 1884
Eco24I GRGCYC 6 cut(s) 295, 382, 538, 1591, 1853, 2114
Eco47I GGWCC 4 cut(s) 856, 1223, 1502, 1535
Eco53kI GAGCTC 2 cut(s) 293, 536
Eco57I CTGAAG 3 cut(s) 675, 951, 1224
Eco72I CACGTG 1 cut(s) 1499
Eco81I CCTNAGG 1 cut(s) 1950
Eco88I CYCGRG 3 cut(s) 407, 621, 1590
EcoICRI GAGCTC 2 cut(s) 293, 536
EcoNI CCTNNNNNAGG 1 cut(s) 1548
EcoO109I RGGNCCY 2 cut(s) 1223, 1535
EcoRI GAATTC 1 cut(s) 1023
EcoRII CCWGG 8 cut(s) 363, 852, 864, 1089, 1484, 1504, 1543, 1982
EcoT14I CCWWGG 2 cut(s) 1727, 1884
EcoT22I ATGCAT 3 cut(s) 420, 600, 604
EcoT38I GRGCYC 6 cut(s) 295, 382, 538, 1591, 1853, 2114
EgeI GGCGCC 1 cut(s) 41
EheI GGCGCC 1 cut(s) 41
ErhI CCWWGG 2 cut(s) 1727, 1884
FaeI CATG 7 cut(s) 598, 602, 630, 683, 887, 1115, 1262
FaqI GGGAC 5 cut(s) 700, 1236, 1291, 1622, 1965
FatI CATG 7 cut(s) 594, 598, 626, 679, 883, 1111, 1258
FauI CCCGC 1 cut(s) 1725
FauNDI CATATG 1 cut(s) 604
Fnu4HI GCNGC 5 cut(s) 43, 46, 1934, 2077, 2080
FokI GGATG 2 cut(s) 1463, 2138
FriOI GRGCYC 6 cut(s) 295, 382, 538, 1591, 1853, 2114
Fsp4HI GCNGC 5 cut(s) 43, 46, 1934, 2077, 2080
FspBI CTAG 2 cut(s) 260, 1814
GlaI GCGC 4 cut(s) 41, 134, 162, 1556
GluI GCNGC 5 cut(s) 43, 46, 1934, 2077, 2080
GsaI CCCAGC 1 cut(s) 1608
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 2 cut(s) 43, 1558
HaeIII GGCC 5 cut(s) 63, 363, 1094, 1647, 2070
HapII CCGG 7 cut(s) 141, 222, 266, 281, 394, 1309, 1846
HgaI GACGC 3 cut(s) 1121, 1433, 1847
HhaI GCGC 4 cut(s) 42, 135, 163, 1557
Hin1I GRCGYC 3 cut(s) 40, 948, 1132
Hin1II CATG 7 cut(s) 598, 602, 630, 683, 887, 1115, 1262
Hin6I GCGC 4 cut(s) 40, 133, 161, 1555
HinP1I GCGC 4 cut(s) 40, 133, 161, 1555
HpaII CCGG 7 cut(s) 141, 222, 266, 281, 394, 1309, 1846
Hpy166II GTNNAC 6 cut(s) 53, 767, 828, 871, 1280, 1571
Hpy8I GTNNAC 6 cut(s) 53, 767, 828, 871, 1280, 1571
Hpy99I CGWCG 2 cut(s) 113, 1863
HpyAV CCTTC 4 cut(s) 319, 505, 1239, 1890
HpyCH4III ACNGT 5 cut(s) 1032, 1274, 1778, 1973, 2141
HpyCH4IV ACGT 5 cut(s) 948, 1360, 1498, 1696, 2095
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 141, 200, 1100, 1424, 1490, 2076, 2085
HpyF3I CTNAG 7 cut(s) 552, 707, 732, 1082, 1203, 1854, 1950
HpySE526I ACGT 5 cut(s) 948, 1360, 1498, 1696, 2095
Hsp92I GRCGYC 3 cut(s) 40, 948, 1132
Hsp92II CATG 7 cut(s) 598, 602, 630, 683, 887, 1115, 1262
HspAI GCGC 4 cut(s) 40, 133, 161, 1555
KasI GGCGCC 1 cut(s) 39
KflI GGGWCCC 1 cut(s) 1223
Kpn2I TCCGGA 2 cut(s) 265, 280
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
LmnI GCTCC 8 cut(s) 130, 268, 283, 385, 435, 1461, 1848, 2109
Lsp1109I GCAGC 1 cut(s) 2091
LweI GCATC 5 cut(s) 405, 1164, 1405, 2002, 2031
MabI ACCWGGT 1 cut(s) 852
MaeI CTAG 2 cut(s) 260, 1814
MaeII ACGT 5 cut(s) 948, 1360, 1498, 1696, 2095
MaeIII GTNAC 9 cut(s) 575, 613, 1032, 1085, 1706, 1754, 1772, 1898, 2102
MbiI CCGCTC 1 cut(s) 1933
MfeI CAATTG 1 cut(s) 1564
MflI RGATCY 3 cut(s) 497, 861, 1511
MhlI GDGCHC 9 cut(s) 295, 382, 538, 546, 1495, 1584, 1591, 1853, 2114
MlsI TGGCCA 2 cut(s) 1094, 2070
MluNI TGGCCA 2 cut(s) 1094, 2070
Mly113I GGCGCC 1 cut(s) 40
MlyI GAGTC 6 cut(s) 318, 362, 1223, 1714, 1819, 1987
MmeI TCCRAC 4 cut(s) 132, 429, 795, 888
Mox20I TGGCCA 2 cut(s) 1094, 2070
Mph1103I ATGCAT 3 cut(s) 420, 600, 604
MroI TCCGGA 2 cut(s) 265, 280
MroNI GCCGGC 1 cut(s) 393
MscI TGGCCA 2 cut(s) 1094, 2070
MseI TTAA 6 cut(s) 489, 1139, 1190, 1401, 1469, 2167
MslI CAYNNNNRTG 1 cut(s) 603
Msp20I TGGCCA 2 cut(s) 1094, 2070
MspA1I CMGCKG 1 cut(s) 573
MspI CCGG 7 cut(s) 141, 222, 266, 281, 394, 1309, 1846
MspR9I CCNGG 9 cut(s) 365, 854, 866, 1091, 1309, 1486, 1506, 1545, 1984
MunI CAATTG 1 cut(s) 1564
MvaI CCWGG 8 cut(s) 365, 854, 866, 1091, 1486, 1506, 1545, 1984
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 8 cut(s) 39, 141, 200, 1100, 1424, 1490, 2076, 2085
NaeI GCCGGC 1 cut(s) 395
NarI GGCGCC 1 cut(s) 40
NciI CCSGG 1 cut(s) 1309
NdeI CATATG 1 cut(s) 604
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 7 cut(s) 598, 602, 630, 683, 887, 1115, 1262
NmeAIII GCCGAG 1 cut(s) 1108
NmuCI GTSAC 5 cut(s) 1032, 1085, 1706, 1898, 2102
NsiI ATGCAT 3 cut(s) 420, 600, 604
NspI RCATGY 1 cut(s) 602
PaeI GCATGC 1 cut(s) 602
PaeR7I CTCGAG 2 cut(s) 621, 1590
PagI TCATGA 2 cut(s) 883, 1258
PasI CCCWGGG 1 cut(s) 1983
PdiI GCCGGC 1 cut(s) 395
PfeI GAWTC 4 cut(s) 104, 655, 695, 2159
Pfl23II CGTACG 1 cut(s) 2092
PflFI GACNNNGTC 1 cut(s) 854
PfoI TCCNGGA 1 cut(s) 1307
PkrI GCNGC 5 cut(s) 44, 47, 1935, 2078, 2081
PleI GAGTC 6 cut(s) 317, 362, 1222, 1713, 1818, 1986
PluTI GGCGCC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 1499
PmlI CACGTG 1 cut(s) 1499
PpsI GAGTC 6 cut(s) 317, 362, 1222, 1713, 1818, 1986
Ppu21I YACGTR 3 cut(s) 1361, 1499, 2096
PpuMI RGGWCCY 2 cut(s) 1223, 1535
PshBI ATTAAT 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 295, 538
Psp5II RGGWCCY 2 cut(s) 1223, 1535
Psp6I CCWGG 8 cut(s) 363, 852, 864, 1089, 1484, 1504, 1543, 1982
PspCI CACGTG 1 cut(s) 1499
PspFI CCCAGC 1 cut(s) 1604
PspGI CCWGG 8 cut(s) 363, 852, 864, 1089, 1484, 1504, 1543, 1982
PspLI CGTACG 1 cut(s) 2092
PspPI GGNCC 5 cut(s) 361, 856, 1223, 1502, 1535
PspPPI RGGWCCY 2 cut(s) 1223, 1535
PstI CTGCAG 1 cut(s) 1840
PstNI CAGNNNCTG 2 cut(s) 775, 1177
PsuI RGATCY 3 cut(s) 497, 861, 1511
PsyI GACNNNGTC 1 cut(s) 854
PvuII CAGCTG 1 cut(s) 573
RsaI GTAC 5 cut(s) 248, 1066, 1279, 1359, 2094
RsaNI GTAC 5 cut(s) 247, 1065, 1278, 1358, 2093
RseI CAYNNNNRTG 1 cut(s) 603
SacI GAGCTC 2 cut(s) 295, 538
SaqAI TTAA 6 cut(s) 489, 1139, 1190, 1401, 1469, 2167
SatI GCNGC 5 cut(s) 43, 46, 1934, 2077, 2080
Sau96I GGNCC 5 cut(s) 361, 856, 1223, 1502, 1535
SchI GAGTC 6 cut(s) 318, 362, 1223, 1714, 1819, 1987
ScrFI CCNGG 9 cut(s) 365, 854, 866, 1091, 1309, 1486, 1506, 1545, 1984
SduI GDGCHC 9 cut(s) 295, 382, 538, 546, 1495, 1584, 1591, 1853, 2114
SexAI ACCWGGT 1 cut(s) 852
SfaNI GCATC 5 cut(s) 405, 1164, 1405, 2002, 2031
SfcI CTRYAG 4 cut(s) 1836, 1969, 2004, 2055
SfoI GGCGCC 1 cut(s) 41
Sfr274I CTCGAG 2 cut(s) 621, 1590
SinI GGWCC 4 cut(s) 856, 1223, 1502, 1535
SlaI CTCGAG 2 cut(s) 621, 1590
SmiMI CAYNNNNRTG 1 cut(s) 603
SmlI CTYRAG 5 cut(s) 347, 539, 621, 759, 1590
SmoI CTYRAG 5 cut(s) 347, 539, 621, 759, 1590
SnaBI TACGTA 1 cut(s) 2096
SphI GCATGC 1 cut(s) 602
SsiI CCGC 9 cut(s) 43, 46, 147, 159, 1267, 1702, 1732, 1933, 2077
SspDI GGCGCC 1 cut(s) 39
SspI AATATT 1 cut(s) 429
SspMI CTAG 2 cut(s) 260, 1814
SstI GAGCTC 2 cut(s) 295, 538
StyD4I CCNGG 9 cut(s) 363, 852, 864, 1089, 1307, 1484, 1504, 1543, 1982
StyI CCWWGG 2 cut(s) 1727, 1884
TaaI ACNGT 5 cut(s) 1032, 1274, 1778, 1973, 2141
TaiI ACGT 5 cut(s) 951, 1363, 1501, 1699, 2098
TaqI TCGA 8 cut(s) 16, 167, 307, 463, 622, 1120, 1591, 1744
TauI GCSGC 4 cut(s) 45, 48, 1936, 2079
TfiI GAWTC 4 cut(s) 104, 655, 695, 2159
Tru1I TTAA 6 cut(s) 489, 1139, 1190, 1401, 1469, 2167
Tru9I TTAA 6 cut(s) 489, 1139, 1190, 1401, 1469, 2167
TscAI CASTG 4 cut(s) 975, 1110, 1589, 2161
TseFI GTSAC 5 cut(s) 1032, 1085, 1706, 1898, 2102
TseI GCWGC 1 cut(s) 2079
Tsp45I GTSAC 5 cut(s) 1032, 1085, 1706, 1898, 2102
TspDTI ATGAA 3 cut(s) 583, 1113, 1388
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 4 cut(s) 975, 1110, 1589, 2161
Tth111I GACNNNGTC 1 cut(s) 854
VpaK11BI GGWCC 4 cut(s) 856, 1223, 1502, 1535
VspI ATTAAT 1 cut(s) 489
XagI CCTNNNNNAGG 1 cut(s) 1548
XapI RAATTY 5 cut(s) 515, 791, 1023, 1397, 1478
XbaI TCTAGA 1 cut(s) 1813
XceI RCATGY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 2 cut(s) 1102, 1910
XhoI CTCGAG 2 cut(s) 621, 1590
XspI CTAG 2 cut(s) 260, 1814
ZraI GACGTC 1 cut(s) 949
Zsp2I ATGCAT 3 cut(s) 420, 600, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.