Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Reverse (-)

22995764 .. 22996545

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1116400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGACTATCAACTTAGAATGTTACTGTGAGCGCGAAAAACCCGACAGTCGAGCGCCAAGCCAACACTCTCATCAAAACGACGACGTCCCGATCCCGCACAAATATCCGATGGCGTCTCCGCCGTCAACATCTCAACCTCTCCTACACTCCGAGTATCAAGCTCAACTTCCTCTCCTTGTCGACGAATCCAACGATTTCTTGCCGTGGCTGGAGCGGAAGGCCGGCGCCGAAATCTCGGTCGGCGTTTCAATTGGGAAACCGGCGCACGGAACGTCTCTGTTTGCTTCAAAGAGCATAACAGCTGGAGACTGCATTTTGAAGGTTCCGTACAACGTGCAACTAGCTCCGGATAATCTCGTTCCAGAACTGAAAGATTTGTTGAGTGATGGAGTTGGCGATGCTGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

137

Amino Acids

14.76

Weight (kDa)

5.05

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	3 cut(s)	95, 119, 214
AclWI	GGATC	1 cut(s)	85
AcyI	GRCGYC	3 cut(s)	84, 113, 225
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	249, 288, 319
AluBI	AGCT	3 cut(s)	161, 302, 344
AluI	AGCT	3 cut(s)	161, 302, 344
Alw26I	GTCTC	3 cut(s)	120, 279, 300
AlwI	GGATC	1 cut(s)	85
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	4 cut(s)	33, 55, 227, 265
BanI	GGYRCC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	2 cut(s)	103, 380
BceAI	ACGGC	2 cut(s)	106, 187
BcoDI	GTCTC	3 cut(s)	120, 279, 300
BfaI	CTAG	1 cut(s)	341
BfoI	RGCGCY	2 cut(s)	56, 228
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmiI	GGNNCC	2 cut(s)	226, 324
BmsI	GCATC	1 cut(s)	388
BpmI	CTGGAG	2 cut(s)	230, 324
BsaHI	GRCGYC	3 cut(s)	84, 113, 225
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	2 cut(s)	221, 259
BseAI	TCCGGA	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	240
BsiSI	CCGG	3 cut(s)	222, 260, 347
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	3 cut(s)	120, 279, 300
BsmBI	CGTCTC	2 cut(s)	120, 279
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	221
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	3 cut(s)	95, 119, 214
BspANI	GGCC	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	226, 324
BspPI	GGATC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	214
BsrFI	RCCGGY	2 cut(s)	221, 259
BssAI	RCCGGY	2 cut(s)	221, 259
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	90
BssNI	GRCGYC	3 cut(s)	84, 113, 225
Bst4CI	ACNGT	2 cut(s)	26, 47
BstACI	GRCGYC	3 cut(s)	84, 113, 225
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	2 cut(s)	56, 228
BstHHI	GCGC	4 cut(s)	33, 55, 227, 265
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	3 cut(s)	120, 279, 300
BstMBI	GATC	1 cut(s)	90
BstMCI	CGRYCG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	4 cut(s)	33, 55, 227, 265
Cfr10I	RCCGGY	2 cut(s)	221, 259
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	328
CviJI	RGCY	6 cut(s)	60, 161, 208, 221, 302, 344
CviKI_1	RGCY	6 cut(s)	60, 161, 208, 221, 302, 344
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	13
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
Esp3I	CGTCTC	2 cut(s)	120, 279
FaiI	YATR	1 cut(s)	296
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	71
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	4 cut(s)	32, 54, 226, 264
GluI	GCNGC	1 cut(s)	402
GsuI	CTGGAG	2 cut(s)	230, 324
HaeII	RGCGCY	2 cut(s)	56, 228
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	3 cut(s)	222, 260, 347
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	4 cut(s)	33, 55, 227, 265
Hin1I	GRCGYC	3 cut(s)	84, 113, 225
Hin6I	GCGC	4 cut(s)	31, 53, 225, 263
HinP1I	GCGC	4 cut(s)	31, 53, 225, 263
HincII	GTYRAC	2 cut(s)	126, 181
HindII	GTYRAC	2 cut(s)	126, 181
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	3 cut(s)	222, 260, 347
Hpy166II	GTNNAC	2 cut(s)	126, 181
Hpy188I	TCNGA	2 cut(s)	108, 151
Hpy188III	TCNNGA	3 cut(s)	88, 347, 362
Hpy8I	GTNNAC	2 cut(s)	126, 181
Hpy99I	CGWCG	3 cut(s)	83, 86, 185
HpyAV	CCTTC	2 cut(s)	211, 313
HpyCH4III	ACNGT	2 cut(s)	26, 47
HpyCH4IV	ACGT	3 cut(s)	84, 272, 333
HpyCH4V	TGCA	3 cut(s)	312, 337, 404
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	3 cut(s)	84, 272, 333
Hsp92I	GRCGYC	3 cut(s)	84, 113, 225
HspAI	GCGC	4 cut(s)	31, 53, 225, 263
KasI	GGCGCC	1 cut(s)	224
Kpn2I	TCCGGA	1 cut(s)	346
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	211, 349
LpnPI	CCDG	6 cut(s)	194, 235, 273, 288, 360, 375
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	3 cut(s)	84, 272, 333
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	92
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	1 cut(s)	90
MfeI	CAATTG	1 cut(s)	249
MluCI	AATT	1 cut(s)	249
Mly113I	GGCGCC	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	2 cut(s)	147, 180
MroI	TCCGGA	1 cut(s)	346
MroNI	GCCGGC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	3 cut(s)	222, 260, 347
MunI	CAATTG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	33
NaeI	GCCGGC	1 cut(s)	223
NarI	GGCGCC	1 cut(s)	225
NdeII	GATC	1 cut(s)	90
NgoMIV	GCCGGC	1 cut(s)	221
NlaIV	GGNNCC	2 cut(s)	226, 324
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	403
PluTI	GGCGCC	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	226, 324
PsyI	GACNNNGTC	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SalI	GTCGAC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	1 cut(s)	90
SetI	ASST	8 cut(s)	87, 139, 163, 275, 304, 324, 336, 346
SfaNI	GCATC	1 cut(s)	388
SfoI	GGCGCC	1 cut(s)	226
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	95, 119, 214
SspDI	GGCGCC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	26, 47
TaiI	ACGT	3 cut(s)	87, 275, 336
TaqI	TCGA	2 cut(s)	49, 180
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	401
TspGWI	ACGGA	2 cut(s)	282, 315
Tth111I	GACNNNGTC	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	341
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.