isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 56 |
| Acc16I | TGCGCA | 2 cut(s) | 1224, 1474 |
| AccB1I | GGYRCC | 1 cut(s) | 245 |
| AccII | CGCG | 1 cut(s) | 356 |
| AccIII | TCCGGA | 1 cut(s) | 367 |
| AclWI | GGATC | 4 cut(s) | 766, 967, 973, 1419 |
| AcsI | RAATTY | 2 cut(s) | 908, 1140 |
| AcuI | CTGAAG | 1 cut(s) | 792 |
| AcvI | CACGTG | 1 cut(s) | 1376 |
| AcyI | GRCGYC | 3 cut(s) | 53, 246, 1249 |
| AdeI | CACNNNGTG | 1 cut(s) | 1157 |
| AfaI | GTAC | 2 cut(s) | 855, 891 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 291, 982, 1213 |
| AflIII | ACRYGT | 1 cut(s) | 1373 |
| AgsI | TTSAA | 6 cut(s) | 38, 340, 352, 915, 1036, 1086 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 57 |
| AjnI | CCWGG | 4 cut(s) | 531, 877, 981, 1206 |
| Alw21I | GWGCWC | 1 cut(s) | 88 |
| Alw26I | GTCTC | 3 cut(s) | 300, 321, 1033 |
| AlwI | GGATC | 4 cut(s) | 766, 967, 973, 1419 |
| Ama87I | CYCGRG | 2 cut(s) | 738, 1407 |
| Aor13HI | TCCGGA | 1 cut(s) | 367 |
| AoxI | GGCC | 3 cut(s) | 240, 463, 504 |
| ApaI | GGGCCC | 1 cut(s) | 508 |
| ApeKI | GCWGC | 4 cut(s) | 76, 358, 987, 1220 |
| ApoI | RAATTY | 2 cut(s) | 908, 1140 |
| AseI | ATTAAT | 1 cut(s) | 615 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 910 |
| AspLEI | GCGC | 5 cut(s) | 237, 248, 358, 1225, 1475 |
| AspS9I | GGNCC | 4 cut(s) | 59, 463, 504, 505 |
| AsuHPI | GGTGA | 5 cut(s) | 581, 688, 893, 1090, 1382 |
| AsuII | TTCGAA | 3 cut(s) | 308, 687, 791 |
| AsuNHI | GCTAGC | 1 cut(s) | 361 |
| AvaI | CYCGRG | 2 cut(s) | 738, 1407 |
| AvaII | GGWCC | 1 cut(s) | 59 |
| BaeGI | GKGCMC | 1 cut(s) | 508 |
| BanI | GGYRCC | 1 cut(s) | 245 |
| BanII | GRGCYC | 2 cut(s) | 88, 508 |
| BauI | CACGAG | 1 cut(s) | 1167 |
| BbrPI | CACGTG | 1 cut(s) | 1376 |
| BbsI | GAAGAC | 2 cut(s) | 515, 840 |
| Bbv12I | GWGCWC | 1 cut(s) | 88 |
| BbvCI | CCTCAGC | 1 cut(s) | 1320 |
| BbvI | GCAGC | 4 cut(s) | 63, 370, 999, 1207 |
| BccI | CCATC | 4 cut(s) | 1109, 1226, 1477, 1499 |
| BceAI | ACGGC | 3 cut(s) | 208, 504, 675 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1202, 1236, 1388, 1422 |
| BciT130I | CCWGG | 4 cut(s) | 533, 879, 983, 1208 |
| BciVI | GTATCC | 1 cut(s) | 1445 |
| BcoDI | GTCTC | 3 cut(s) | 300, 321, 1033 |
| BfaI | CTAG | 1 cut(s) | 362 |
| BfoI | RGCGCY | 1 cut(s) | 249 |
| BfuI | GTATCC | 1 cut(s) | 1445 |
| BglII | AGATCT | 1 cut(s) | 623 |
| BisI | GCNGC | 4 cut(s) | 77, 359, 988, 1221 |
| BlsI | GCNGC | 4 cut(s) | 78, 360, 989, 1222 |
| Bme1390I | CCNGG | 4 cut(s) | 533, 879, 983, 1208 |
| Bme18I | GGWCC | 1 cut(s) | 59 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 57 |
| BmeT110I | CYCGRG | 2 cut(s) | 738, 1407 |
| BmgT120I | GGNCC | 4 cut(s) | 59, 463, 504, 505 |
| BmiI | GGNNCC | 5 cut(s) | 61, 247, 345, 506, 507 |
| BmrFI | CCNGG | 4 cut(s) | 533, 879, 983, 1208 |
| BmsI | GCATC | 3 cut(s) | 531, 1321, 1343 |
| BmtI | GCTAGC | 1 cut(s) | 365 |
| BpiI | GAAGAC | 2 cut(s) | 515, 840 |
| BpmI | CTGGAG | 2 cut(s) | 554, 596 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1320 |
| Bpu14I | TTCGAA | 3 cut(s) | 308, 687, 791 |
| BpuEI | CTTGAG | 3 cut(s) | 470, 650, 1176 |
| BsaAI | YACGTR | 1 cut(s) | 1376 |
| BsaBI | GATNNNNATC | 1 cut(s) | 977 |
| BsaHI | GRCGYC | 3 cut(s) | 53, 246, 1249 |
| BsaI | GGTCTC | 1 cut(s) | 300 |
| BsaJI | CCNNGG | 4 cut(s) | 224, 466, 982, 1529 |
| BsaWI | WCCGGW | 2 cut(s) | 367, 1392 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 553, 583 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 291, 982, 1213 |
| Bse118I | RCCGGY | 1 cut(s) | 242 |
| Bse1I | ACTGG | 3 cut(s) | 11, 21, 1052 |
| Bse3DI | GCAATG | 1 cut(s) | 78 |
| Bse8I | GATNNNNATC | 1 cut(s) | 977 |
| BseAI | TCCGGA | 1 cut(s) | 367 |
| BseBI | CCWGG | 4 cut(s) | 533, 879, 983, 1208 |
| BseDI | CCNNGG | 4 cut(s) | 224, 466, 982, 1529 |
| BseJI | GATNNNNATC | 1 cut(s) | 977 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 291, 982, 1213 |
| BseMI | GCAATG | 1 cut(s) | 78 |
| BseMII | CTCAG | 4 cut(s) | 142, 186, 1311, 1533 |
| BseNI | ACTGG | 3 cut(s) | 11, 21, 1052 |
| BseRI | GAGGAG | 2 cut(s) | 551, 1179 |
| BseSI | GKGCMC | 1 cut(s) | 508 |
| BseXI | GCAGC | 4 cut(s) | 63, 370, 999, 1207 |
| BseYI | CCCAGC | 1 cut(s) | 79 |
| Bsh1236I | CGCG | 1 cut(s) | 356 |
| BshFI | GGCC | 3 cut(s) | 242, 465, 506 |
| BshNI | GGYRCC | 1 cut(s) | 245 |
| BsiHKAI | GWGCWC | 1 cut(s) | 88 |
| BsiHKCI | CYCGRG | 2 cut(s) | 738, 1407 |
| BsiSI | CCGG | 4 cut(s) | 243, 324, 368, 1393 |
| BslFI | GGGAC | 2 cut(s) | 45, 817 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 291, 982, 1213 |
| BsmAI | GTCTC | 3 cut(s) | 300, 321, 1033 |
| BsmFI | GGGAC | 2 cut(s) | 45, 817 |
| BsmI | GAATGC | 1 cut(s) | 184 |
| BsnI | GGCC | 3 cut(s) | 242, 465, 506 |
| Bso31I | GGTCTC | 1 cut(s) | 300 |
| BsoBI | CYCGRG | 2 cut(s) | 738, 1407 |
| Bsp119I | TTCGAA | 3 cut(s) | 308, 687, 791 |
| Bsp120I | GGGCCC | 1 cut(s) | 504 |
| Bsp1286I | GDGCHC | 2 cut(s) | 88, 508 |
| Bsp13I | TCCGGA | 1 cut(s) | 367 |
| Bsp143I | GATC | 6 cut(s) | 623, 771, 862, 972, 978, 1411 |
| Bsp19I | CCATGG | 1 cut(s) | 466 |
| BspANI | GGCC | 3 cut(s) | 242, 465, 506 |
| BspCNI | CTCAG | 4 cut(s) | 141, 185, 1312, 1534 |
| BspEI | TCCGGA | 1 cut(s) | 367 |
| BspFNI | CGCG | 1 cut(s) | 356 |
| BspHI | TCATGA | 3 cut(s) | 796, 964, 1000 |
| BspLI | GGNNCC | 5 cut(s) | 61, 247, 345, 506, 507 |
| BspOI | GCTAGC | 1 cut(s) | 365 |
| BspPI | GGATC | 4 cut(s) | 766, 967, 973, 1419 |
| BspQI | GCTCTTC | 1 cut(s) | 1087 |
| BspT104I | TTCGAA | 3 cut(s) | 308, 687, 791 |
| BspT107I | GGYRCC | 1 cut(s) | 245 |
| BspTNI | GGTCTC | 1 cut(s) | 300 |
| BsrDI | GCAATG | 1 cut(s) | 78 |
| BsrFI | RCCGGY | 1 cut(s) | 242 |
| BsrI | ACTGG | 3 cut(s) | 11, 21, 1052 |
| BssAI | RCCGGY | 1 cut(s) | 242 |
| BssECI | CCNNGG | 4 cut(s) | 224, 466, 982, 1529 |
| BssMI | GATC | 6 cut(s) | 623, 771, 862, 972, 978, 1411 |
| BssNI | GRCGYC | 3 cut(s) | 53, 246, 1249 |
| BssSI | CACGAG | 1 cut(s) | 1167 |
| BssT1I | CCWWGG | 2 cut(s) | 466, 1529 |
| Bst2BI | CACGAG | 1 cut(s) | 1167 |
| Bst2UI | CCWGG | 4 cut(s) | 533, 879, 983, 1208 |
| Bst6I | CTCTTC | 3 cut(s) | 954, 1031, 1087 |
| BstACI | GRCGYC | 3 cut(s) | 53, 246, 1249 |
| BstBAI | YACGTR | 1 cut(s) | 1376 |
| BstBI | TTCGAA | 3 cut(s) | 308, 687, 791 |
| BstC8I | GCNNGC | 5 cut(s) | 244, 363, 432, 717, 1427 |
| BstDEI | CTNAG | 7 cut(s) | 128, 172, 401, 1199, 1320, 1418, 1542 |
| BstDSI | CCRYGG | 2 cut(s) | 224, 466 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 289, 1211 |
| BstFNI | CGCG | 1 cut(s) | 356 |
| BstH2I | RGCGCY | 1 cut(s) | 249 |
| BstHHI | GCGC | 5 cut(s) | 237, 248, 358, 1225, 1475 |
| BstKTI | GATC | 6 cut(s) | 626, 774, 865, 975, 981, 1414 |
| BstMAI | GTCTC | 3 cut(s) | 300, 321, 1033 |
| BstMBI | GATC | 6 cut(s) | 623, 771, 862, 972, 978, 1411 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 243, 311, 320, 362, 431, 759 |
| BstNI | CCWGG | 4 cut(s) | 533, 879, 983, 1208 |
| BstNSI | RCATGY | 1 cut(s) | 719 |
| BstSCI | CCNGG | 4 cut(s) | 531, 877, 981, 1206 |
| BstSLI | GKGCMC | 1 cut(s) | 508 |
| BstUI | CGCG | 1 cut(s) | 356 |
| BstV1I | GCAGC | 4 cut(s) | 63, 370, 999, 1207 |
| BstV2I | GAAGAC | 2 cut(s) | 515, 840 |
| BstX2I | RGATCY | 4 cut(s) | 623, 972, 978, 1411 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1505 |
| BstYI | RGATCY | 4 cut(s) | 623, 972, 978, 1411 |
| BsuI | GTATCC | 1 cut(s) | 1445 |
| BsuRI | GGCC | 3 cut(s) | 242, 465, 506 |
| BtgI | CCRYGG | 2 cut(s) | 224, 466 |
| BtgZI | GCGATG | 1 cut(s) | 432 |
| Cac8I | GCNNGC | 5 cut(s) | 244, 363, 432, 717, 1427 |
| CciI | TCATGA | 3 cut(s) | 796, 964, 1000 |
| CfoI | GCGC | 5 cut(s) | 237, 248, 358, 1225, 1475 |
| Cfr10I | RCCGGY | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 4 cut(s) | 59, 463, 504, 505 |
| CseI | GACGC | 1 cut(s) | 1238 |
| CsiI | ACCWGGT | 1 cut(s) | 1206 |
| Csp6I | GTAC | 2 cut(s) | 854, 890 |
| CviAII | CATG | 8 cut(s) | 467, 712, 716, 744, 797, 965, 1001, 1229 |
| CviQI | GTAC | 2 cut(s) | 854, 890 |
| DdeI | CTNAG | 7 cut(s) | 128, 172, 401, 1199, 1320, 1418, 1542 |
| DinI | GGCGCC | 1 cut(s) | 247 |
| DpnI | GATC | 6 cut(s) | 625, 773, 864, 974, 980, 1413 |
| DpnII | GATC | 6 cut(s) | 623, 771, 862, 972, 978, 1411 |
| DraI | TTTAAA | 1 cut(s) | 13 |
| DraIII | CACNNNGTG | 1 cut(s) | 1157 |
| DriI | GACNNNNNGTC | 1 cut(s) | 57 |
| Eam1104I | CTCTTC | 3 cut(s) | 954, 1031, 1087 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 57 |
| EarI | CTCTTC | 3 cut(s) | 954, 1031, 1087 |
| Ecl136II | GAGCTC | 1 cut(s) | 86 |
| Eco130I | CCWWGG | 2 cut(s) | 466, 1529 |
| Eco24I | GRGCYC | 2 cut(s) | 88, 508 |
| Eco31I | GGTCTC | 1 cut(s) | 300 |
| Eco32I | GATATC | 2 cut(s) | 255, 1299 |
| Eco47I | GGWCC | 1 cut(s) | 59 |
| Eco53kI | GAGCTC | 1 cut(s) | 86 |
| Eco57I | CTGAAG | 1 cut(s) | 792 |
| Eco72I | CACGTG | 1 cut(s) | 1376 |
| Eco88I | CYCGRG | 2 cut(s) | 738, 1407 |
| EcoICRI | GAGCTC | 1 cut(s) | 86 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 289, 1211 |
| EcoO109I | RGGNCCY | 1 cut(s) | 505 |
| EcoRI | GAATTC | 1 cut(s) | 1140 |
| EcoRII | CCWGG | 4 cut(s) | 531, 877, 981, 1206 |
| EcoRV | GATATC | 2 cut(s) | 255, 1299 |
| EcoT14I | CCWWGG | 2 cut(s) | 466, 1529 |
| EcoT22I | ATGCAT | 4 cut(s) | 546, 717, 721, 1336 |
| EcoT38I | GRGCYC | 2 cut(s) | 88, 508 |
| EgeI | GGCGCC | 1 cut(s) | 247 |
| EheI | GGCGCC | 1 cut(s) | 247 |
| ErhI | CCWWGG | 2 cut(s) | 466, 1529 |
| FaeI | CATG | 8 cut(s) | 470, 715, 719, 747, 800, 968, 1004, 1232 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 825, 857 |
| FaqI | GGGAC | 2 cut(s) | 45, 817 |
| FatI | CATG | 8 cut(s) | 466, 711, 715, 743, 796, 964, 1000, 1228 |
| FauNDI | CATATG | 1 cut(s) | 721 |
| Fnu4HI | GCNGC | 4 cut(s) | 77, 359, 988, 1221 |
| FriOI | GRGCYC | 2 cut(s) | 88, 508 |
| Fsp4HI | GCNGC | 4 cut(s) | 77, 359, 988, 1221 |
| FspBI | CTAG | 1 cut(s) | 362 |
| FspI | TGCGCA | 2 cut(s) | 1224, 1474 |
| GlaI | GCGC | 5 cut(s) | 236, 247, 357, 1224, 1474 |
| GluI | GCNGC | 4 cut(s) | 77, 359, 988, 1221 |
| GsaI | CCCAGC | 1 cut(s) | 83 |
| GsuI | CTGGAG | 2 cut(s) | 554, 596 |
| HaeII | RGCGCY | 1 cut(s) | 249 |
| HaeIII | GGCC | 3 cut(s) | 242, 465, 506 |
| HapII | CCGG | 4 cut(s) | 243, 324, 368, 1393 |
| HgaI | GACGC | 1 cut(s) | 1238 |
| HhaI | GCGC | 5 cut(s) | 237, 248, 358, 1225, 1475 |
| Hin1I | GRCGYC | 3 cut(s) | 53, 246, 1249 |
| Hin1II | CATG | 8 cut(s) | 470, 715, 719, 747, 800, 968, 1004, 1232 |
| Hin6I | GCGC | 5 cut(s) | 235, 246, 356, 1223, 1473 |
| HinP1I | GCGC | 5 cut(s) | 235, 246, 356, 1223, 1473 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 6 cut(s) | 494, 583, 793, 812, 1091, 1442 |
| HpaII | CCGG | 4 cut(s) | 243, 324, 368, 1393 |
| HphI | GGTGA | 5 cut(s) | 581, 688, 893, 1090, 1382 |
| Hpy166II | GTNNAC | 2 cut(s) | 884, 945 |
| Hpy188I | TCNGA | 4 cut(s) | 499, 811, 850, 1290 |
| Hpy8I | GTNNAC | 2 cut(s) | 884, 945 |
| Hpy99I | CGWCG | 3 cut(s) | 52, 55, 120 |
| HpyAV | CCTTC | 5 cut(s) | 285, 304, 334, 560, 1019 |
| HpyCH4IV | ACGT | 2 cut(s) | 53, 1375 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 243, 311, 320, 362, 431, 759 |
| HpyF3I | CTNAG | 7 cut(s) | 128, 172, 401, 1199, 1320, 1418, 1542 |
| HpySE526I | ACGT | 2 cut(s) | 53, 1375 |
| Hsp92I | GRCGYC | 3 cut(s) | 53, 246, 1249 |
| Hsp92II | CATG | 8 cut(s) | 470, 715, 719, 747, 800, 968, 1004, 1232 |
| HspAI | GCGC | 5 cut(s) | 235, 246, 356, 1223, 1473 |
| KasI | GGCGCC | 1 cut(s) | 245 |
| Kpn2I | TCCGGA | 1 cut(s) | 367 |
| KroI | GCCGGC | 1 cut(s) | 242 |
| KroNI | GCCGGC | 1 cut(s) | 244 |
| Kzo9I | GATC | 6 cut(s) | 623, 771, 862, 972, 978, 1411 |
| LguI | GCTCTTC | 1 cut(s) | 1087 |
| LmnI | GCTCC | 5 cut(s) | 83, 232, 370, 561, 1533 |
| Lsp1109I | GCAGC | 4 cut(s) | 63, 370, 999, 1207 |
| LweI | GCATC | 3 cut(s) | 531, 1321, 1343 |
| MabI | ACCWGGT | 1 cut(s) | 1206 |
| MaeI | CTAG | 1 cut(s) | 362 |
| MaeII | ACGT | 2 cut(s) | 53, 1375 |
| MaeIII | GTNAC | 2 cut(s) | 730, 1202 |
| MalI | GATC | 6 cut(s) | 625, 773, 864, 974, 980, 1413 |
| MboI | GATC | 6 cut(s) | 623, 771, 862, 972, 978, 1411 |
| MboII | GAAGA | 5 cut(s) | 515, 845, 941, 1048, 1074 |
| MfeI | CAATTG | 1 cut(s) | 816 |
| MflI | RGATCY | 4 cut(s) | 623, 972, 978, 1411 |
| MhlI | GDGCHC | 2 cut(s) | 88, 508 |
| MluCI | AATT | 8 cut(s) | 206, 612, 651, 816, 868, 908, 1140, 1313 |
| Mly113I | GGCGCC | 1 cut(s) | 246 |
| MmeI | TCCRAC | 4 cut(s) | 170, 210, 912, 1005 |
| Mph1103I | ATGCAT | 4 cut(s) | 546, 717, 721, 1336 |
| MroI | TCCGGA | 1 cut(s) | 367 |
| MroNI | GCCGGC | 1 cut(s) | 242 |
| MroXI | GAANNNNTTC | 1 cut(s) | 910 |
| MseI | TTAA | 6 cut(s) | 12, 615, 1256, 1278, 1307, 1341 |
| MslI | CAYNNNNRTG | 2 cut(s) | 720, 1503 |
| MspI | CCGG | 4 cut(s) | 243, 324, 368, 1393 |
| MspR9I | CCNGG | 4 cut(s) | 533, 879, 983, 1208 |
| MssI | GTTTAAAC | 1 cut(s) | 13 |
| MunI | CAATTG | 1 cut(s) | 816 |
| Mva1269I | GAATGC | 1 cut(s) | 184 |
| MvaI | CCWGG | 4 cut(s) | 533, 879, 983, 1208 |
| MvnI | CGCG | 1 cut(s) | 356 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 243, 311, 320, 362, 431, 759 |
| NaeI | GCCGGC | 1 cut(s) | 244 |
| NarI | GGCGCC | 1 cut(s) | 246 |
| NcoI | CCATGG | 1 cut(s) | 466 |
| NdeI | CATATG | 1 cut(s) | 721 |
| NdeII | GATC | 6 cut(s) | 623, 771, 862, 972, 978, 1411 |
| NgoMIV | GCCGGC | 1 cut(s) | 242 |
| NheI | GCTAGC | 1 cut(s) | 361 |
| NlaIII | CATG | 8 cut(s) | 470, 715, 719, 747, 800, 968, 1004, 1232 |
| NlaIV | GGNNCC | 5 cut(s) | 61, 247, 345, 506, 507 |
| NmeAIII | GCCGAG | 2 cut(s) | 274, 1225 |
| NmuCI | GTSAC | 1 cut(s) | 1202 |
| NsbI | TGCGCA | 2 cut(s) | 1224, 1474 |
| NsiI | ATGCAT | 4 cut(s) | 546, 717, 721, 1336 |
| NspI | RCATGY | 1 cut(s) | 719 |
| NspV | TTCGAA | 3 cut(s) | 308, 687, 791 |
| PaeI | GCATGC | 1 cut(s) | 719 |
| PaeR7I | CTCGAG | 1 cut(s) | 738 |
| PagI | TCATGA | 3 cut(s) | 796, 964, 1000 |
| PciSI | GCTCTTC | 1 cut(s) | 1087 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 438 |
| PctI | GAATGC | 1 cut(s) | 184 |
| PdiI | GCCGGC | 1 cut(s) | 244 |
| PdmI | GAANNNNTTC | 1 cut(s) | 910 |
| PfeI | GAWTC | 6 cut(s) | 494, 583, 793, 812, 1091, 1442 |
| PflFI | GACNNNGTC | 2 cut(s) | 52, 1208 |
| PkrI | GCNGC | 4 cut(s) | 78, 360, 989, 1222 |
| PluTI | GGCGCC | 1 cut(s) | 249 |
| PmaCI | CACGTG | 1 cut(s) | 1376 |
| PmeI | GTTTAAAC | 1 cut(s) | 13 |
| PmlI | CACGTG | 1 cut(s) | 1376 |
| Ppu21I | YACGTR | 1 cut(s) | 1376 |
| PshBI | ATTAAT | 1 cut(s) | 615 |
| Psp124BI | GAGCTC | 1 cut(s) | 88 |
| Psp6I | CCWGG | 4 cut(s) | 531, 877, 981, 1206 |
| PspCI | CACGTG | 1 cut(s) | 1376 |
| PspFI | CCCAGC | 1 cut(s) | 79 |
| PspGI | CCWGG | 4 cut(s) | 531, 877, 981, 1206 |
| PspN4I | GGNNCC | 5 cut(s) | 61, 247, 345, 506, 507 |
| PspOMI | GGGCCC | 1 cut(s) | 504 |
| PspPI | GGNCC | 4 cut(s) | 59, 463, 504, 505 |
| PsuI | RGATCY | 4 cut(s) | 623, 972, 978, 1411 |
| PsyI | GACNNNGTC | 2 cut(s) | 52, 1208 |
| RsaI | GTAC | 2 cut(s) | 855, 891 |
| RsaNI | GTAC | 2 cut(s) | 854, 890 |
| RseI | CAYNNNNRTG | 2 cut(s) | 720, 1503 |
| SacI | GAGCTC | 1 cut(s) | 88 |
| SapI | GCTCTTC | 1 cut(s) | 1087 |
| SaqAI | TTAA | 6 cut(s) | 12, 615, 1256, 1278, 1307, 1341 |
| SatI | GCNGC | 4 cut(s) | 77, 359, 988, 1221 |
| Sau3AI | GATC | 6 cut(s) | 623, 771, 862, 972, 978, 1411 |
| Sau96I | GGNCC | 4 cut(s) | 59, 463, 504, 505 |
| ScrFI | CCNGG | 4 cut(s) | 533, 879, 983, 1208 |
| SduI | GDGCHC | 2 cut(s) | 88, 508 |
| SexAI | ACCWGGT | 1 cut(s) | 1206 |
| SfaNI | GCATC | 3 cut(s) | 531, 1321, 1343 |
| SfoI | GGCGCC | 1 cut(s) | 247 |
| Sfr274I | CTCGAG | 1 cut(s) | 738 |
| SfuI | TTCGAA | 3 cut(s) | 308, 687, 791 |
| SinI | GGWCC | 1 cut(s) | 59 |
| SlaI | CTCGAG | 1 cut(s) | 738 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 720, 1503 |
| SmlI | CTYRAG | 4 cut(s) | 449, 665, 738, 1191 |
| SmoI | CTYRAG | 4 cut(s) | 449, 665, 738, 1191 |
| SphI | GCATGC | 1 cut(s) | 719 |
| Sse9I | AATT | 8 cut(s) | 206, 612, 651, 816, 868, 908, 1140, 1313 |
| SspDI | GGCGCC | 1 cut(s) | 245 |
| SspI | AATATT | 1 cut(s) | 555 |
| SspMI | CTAG | 1 cut(s) | 362 |
| SstI | GAGCTC | 1 cut(s) | 88 |
| StyD4I | CCNGG | 4 cut(s) | 531, 877, 981, 1206 |
| StyI | CCWWGG | 2 cut(s) | 466, 1529 |
| TaiI | ACGT | 2 cut(s) | 56, 1378 |
| TaqI | TCGA | 7 cut(s) | 88, 308, 687, 739, 791, 1212, 1440 |
| TasI | AATT | 8 cut(s) | 206, 612, 651, 816, 868, 908, 1140, 1313 |
| TfiI | GAWTC | 6 cut(s) | 494, 583, 793, 812, 1091, 1442 |
| Tru1I | TTAA | 6 cut(s) | 12, 615, 1256, 1278, 1307, 1341 |
| Tru9I | TTAA | 6 cut(s) | 12, 615, 1256, 1278, 1307, 1341 |
| TseFI | GTSAC | 1 cut(s) | 1202 |
| TseI | GCWGC | 4 cut(s) | 76, 358, 987, 1220 |
| Tsp45I | GTSAC | 1 cut(s) | 1202 |
| TspDTI | ATGAA | 4 cut(s) | 700, 846, 953, 1034 |
| TspGWI | ACGGA | 3 cut(s) | 250, 303, 336 |
| Tth111I | GACNNNGTC | 2 cut(s) | 52, 1208 |
| VpaK11BI | GGWCC | 1 cut(s) | 59 |
| VspI | ATTAAT | 1 cut(s) | 615 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 289, 1211 |
| XapI | RAATTY | 2 cut(s) | 908, 1140 |
| XceI | RCATGY | 1 cut(s) | 719 |
| XhoI | CTCGAG | 1 cut(s) | 738 |
| XmnI | GAANNNNTTC | 1 cut(s) | 910 |
| XspI | CTAG | 1 cut(s) | 362 |
| ZraI | GACGTC | 1 cut(s) | 54 |
| Zsp2I | ATGCAT | 4 cut(s) | 546, 717, 721, 1336 |