Rh1BG288900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000846
Physical Location & Seq
Reverse (-)
42477381 .. 42485050
7670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG288900.1

Sequence Viewer

Length: 2073 bp
ATGCTACTGGTAGCTCGACAATTCAGCCATCGCTGGTGGCGCCGCCGCCGTCCACACATCGGCCTCTCCCACACTCCACTCACCAACCTCAACTTCCATTCCGAATCCGACGACTTCTTGCCGTGGCTGGAGCGCAAGTCCGGCACCGAAATCTCTTCCGCTCTTTCGATAGGGAAATGCACTCTCGGAACGGCTCTCTTTGCTTCCAAGAGCATAAGAGCCGGAGACTGCATATTGAAAGTTCCGTACAGCGTGCAACTAGCTCCGGATAATCTTGCTCCGGAATTGAGAGCTTTGTTAGGTGATCGAGTCGGTGATGTTGCGAAGGTCGCCATTGTCATTTTGCTCGAGCAGAAAATGGGCCAGGACTCTGAATGGGCTCCTTACATCAGCCGGCTTCCTCGCCCCGAGGAGATGCATAGCACAATATTTTGGAGCGAACATGAGTTGGAGATGATTTGTCAAAGCTCTCTGTTTCAGGAGACAATTAATCAAAGATCCCTTGTTGAAAAGGAATTTTTGGCAGTTAGGAGAGCTCTTGAGCACTTTCCTGAGATGTTCCAAAGTATCAGCTGTAAGGATTTCATGCATGCATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCAGAAAGGGTTATTCCCTGATTCCATTTGCAGATTTTTTGAACCATGATGGGACTTCAGAATCAGTTGTGCTGAGTGATGATGACAAACATTTCTCAGAGGTGATTGCTGATCGTAGTTATGCTCAAGGTGAACAGGTGCTGATAAGATATGGCAAATTTTCAAACGCTACCCTGCTGTTGGACTTTGGGTTTACACTTCCATACAACATTCACGACCAGGTCCAGATCCAGTGGATTGTTTCACAATCAAGTTGGGAAGTGAAATCTGGTAGTGGAAAGGGGAAAGGAATTCCACAGTCACTTCGTGCATTTGCTCGTGTCCTGTGTTGTACCTCTTGTGAAGAACTTAGTGACCTGGTCAATGAAGCAGTGGAACATGATGGTCGATTGGCTCGGCGTCCTTTAACAAATAGAAGCAGAGAGATTGAAGCACATCAGATGCTGATGGAAAAATTAACCCAATTAGCTGAGGATTGTGATGCATCTTTTAAGTCTCTGGGACCCCCTTCGTTTTCTTCAGATAAAATGCCTCGTCATGATGACCGCCATGGTGGTACACGGCTCTATGTTGGTCGCTTGTCGTCCCGGACAAGATCACGGGAACTGGAAGATGTATTCAGCCGATATGGAAGAGTACGTGATGTGGATATGAAGCGTGATTTTGCCTTTGTTGAATTTAATGATCCCCGTGATGCTGATGACGCAAGATATAGCCTGAATGGTCGGGATGTTGATGGGAGCCGTTTAATTGTGGAATTTGCCAGGGGGGCACCACGTGGTCCAGGTGGATCCCGTGAGTATCTTGGTAGAGGGCCTCCTCCTGGTTCAGGGCGCTGTTTCAATTGTGGACTTGATGGGCATTGGGCTCGAGATTGCAAAGCTGGGGACTGGAAGAATAAGTGTTATCGTTGTGGGGAACGAGGCCACATTGAAAGAAATTGTCAGAACAGCCCGAAGAAAACCTCCTCCAAACGTGGGCGGAGTCACTCACGCTCACCAAGTCCAAGGCGGGGCAGAAGTCGAAGCCGTAGTTACAGCAGGGGTCATAGTTACAGTCAATCAAGATCACCTGTGAGGAGAGAAAGGAGTCTAGAGAGAAGATCAAGAAGTCCTGCAGACAGCCGGAGCCCTAAGCGTCGCAGGGCTTCTCCACCACCTTCCAAGGGGAGGAAGCGTGACCAATCTCCCGATGGGAGAAGCCCACAAGAGCGGCGTAGTGTCTCCCCTCGGGATCGCCGATCTGACTACAGTAGGAGTCCCAGGGGAAAGAGTAGAAGCCCTATAGGTGATGCCGAAGAGAAAAGCAATGGTGATAAGATGCACAGAAGCCCTGTAGAAGAAAATGGCCATAGCGGCAGCCCAAGCCCCGTACGTAGGGGTGATAGGAGCCCCGCTGAAGAGGATGATGATAACCATGGTTCTCCAAGAGGCAGTGAATCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

690

Amino Acids

78.06

Weight (kDa)

9.55

Isoelectric Point (pI)

76.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 397 - 458 1e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 39, 143, 1396
AccBSI CCGCTC 2 cut(s) 161, 1837
AccIII TCCGGA 2 cut(s) 265, 280
AciI CCGC 9 cut(s) 43, 46, 159, 1171, 1606, 1636, 1837, 1980, 2019
AclWI GGATC 6 cut(s) 492, 847, 1304, 1410, 1423, 1866
AcoI YGGCCR 1 cut(s) 1972
AcsI RAATTY 5 cut(s) 515, 782, 915, 1301, 1382
AcuI CTGAAG 3 cut(s) 666, 1128, 2043
AcvI CACGTG 1 cut(s) 1403
AcyI GRCGYC 2 cut(s) 40, 1024
AdeI CACNNNGTG 2 cut(s) 932, 1403
AfaI GTAC 5 cut(s) 248, 958, 1183, 1263, 1998
AfiI CCNNNNNNNGG 9 cut(s) 59, 805, 1448, 1454, 1602, 1637, 1790, 1794, 2001
AgsI TTSAA 8 cut(s) 238, 509, 667, 789, 1055, 1301, 1468, 1559
AjnI CCWGG 7 cut(s) 363, 843, 981, 1388, 1408, 1447, 1886
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 9 cut(s) 14, 263, 293, 468, 536, 573, 1094, 1508, 2069
AluI AGCT 9 cut(s) 14, 263, 293, 468, 536, 573, 1094, 1508, 2069
Alw21I GWGCWC 2 cut(s) 538, 546
Alw26I GTCTC 4 cut(s) 219, 476, 1125, 1852
AlwI GGATC 6 cut(s) 492, 847, 1304, 1410, 1423, 1866
AlwNI CAGNNNCTG 2 cut(s) 766, 1069
Ama87I CYCGRG 5 cut(s) 347, 407, 612, 1494, 1854
Aor13HI TCCGGA 2 cut(s) 265, 280
AoxI GGCC 5 cut(s) 61, 361, 1439, 1549, 1972
ApeKI GCWGC 1 cut(s) 1983
ApoI RAATTY 5 cut(s) 515, 782, 915, 1301, 1382
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 3 cut(s) 42, 135, 1461
AspS9I GGNCC 5 cut(s) 361, 847, 1127, 1406, 1439
AsuC2I CCSGG 1 cut(s) 1213
AvaI CYCGRG 5 cut(s) 347, 407, 612, 1494, 1854
AvaII GGWCC 3 cut(s) 847, 1127, 1406
BaeGI GKGCMC 1 cut(s) 1399
BalI TGGCCA 1 cut(s) 1974
BamHI GGATCC 1 cut(s) 1415
BanI GGYRCC 3 cut(s) 39, 143, 1396
BanII GRGCYC 5 cut(s) 382, 538, 1495, 1757, 2018
BauI CACGAG 1 cut(s) 942
BbrPI CACGTG 1 cut(s) 1403
Bbv12I GWGCWC 2 cut(s) 538, 546
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 1 cut(s) 1995
BccI CCATC 7 cut(s) 36, 668, 1001, 1066, 1355, 1475, 1811
BceAI ACGGC 6 cut(s) 33, 106, 207, 1202, 1353, 1638
BcgI CGANNNNNNTGC 2 cut(s) 1475, 1509
BciT130I CCWGG 7 cut(s) 365, 845, 983, 1390, 1410, 1449, 1888
BcnI CCSGG 1 cut(s) 1213
BcoDI GTCTC 4 cut(s) 219, 476, 1125, 1852
BfaI CTAG 2 cut(s) 260, 1718
BfmI CTRYAG 4 cut(s) 1740, 1873, 1908, 1959
BfoI RGCGCY 2 cut(s) 43, 1462
BglI GCCNNNNNGGC 2 cut(s) 1394, 1980
BisI GCNGC 5 cut(s) 43, 46, 1838, 1981, 1984
BlsI GCNGC 5 cut(s) 44, 47, 1839, 1982, 1985
Bme1390I CCNGG 8 cut(s) 365, 845, 983, 1213, 1390, 1410, 1449, 1888
Bme18I GGWCC 3 cut(s) 847, 1127, 1406
BmeT110I CYCGRG 5 cut(s) 347, 407, 612, 1494, 1854
BmgT120I GGNCC 5 cut(s) 361, 847, 1127, 1406, 1439
BmrFI CCNGG 8 cut(s) 365, 845, 983, 1213, 1390, 1410, 1449, 1888
BmsI GCATC 7 cut(s) 405, 1056, 1096, 1118, 1309, 1906, 1935
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 2 cut(s) 1095, 1758
BpuEI CTTGAG 2 cut(s) 560, 735
BpuMI CCSGG 1 cut(s) 1213
BsaAI YACGTR 3 cut(s) 1265, 1403, 2000
BsaHI GRCGYC 2 cut(s) 40, 1024
BsaWI WCCGGW 2 cut(s) 265, 280
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 1786, 1816
Bsc4I CCNNNNNNNGG 9 cut(s) 59, 805, 1448, 1454, 1602, 1637, 1790, 1794, 2001
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 4 cut(s) 12, 856, 1236, 1520
Bse3DI GCAATG 1 cut(s) 1939
BseAI TCCGGA 2 cut(s) 265, 280
BseBI CCWGG 7 cut(s) 365, 845, 983, 1390, 1410, 1449, 1888
BseGI GGATG 2 cut(s) 1360, 2035
BseLI CCNNNNNNNGG 9 cut(s) 59, 805, 1448, 1454, 1602, 1637, 1790, 1794, 2001
BseMI GCAATG 1 cut(s) 1939
BseMII CTCAG 4 cut(s) 543, 689, 735, 1086
BseNI ACTGG 4 cut(s) 12, 856, 1236, 1520
BseRI GAGGAG 4 cut(s) 425, 1434, 1582, 1717
BseSI GKGCMC 1 cut(s) 1399
BseXI GCAGC 1 cut(s) 1995
BseYI CCCAGC 1 cut(s) 1508
BshFI GGCC 5 cut(s) 63, 363, 1441, 1551, 1974
BshNI GGYRCC 3 cut(s) 39, 143, 1396
BsiHKAI GWGCWC 2 cut(s) 538, 546
BsiHKCI CYCGRG 5 cut(s) 347, 407, 612, 1494, 1854
BsiSI CCGG 7 cut(s) 141, 222, 266, 281, 394, 1213, 1750
BsiWI CGTACG 1 cut(s) 1996
BslFI GGGAC 5 cut(s) 691, 1140, 1195, 1526, 1869
BslI CCNNNNNNNGG 9 cut(s) 59, 805, 1448, 1454, 1602, 1637, 1790, 1794, 2001
BsmAI GTCTC 4 cut(s) 219, 476, 1125, 1852
BsmFI GGGAC 5 cut(s) 691, 1140, 1195, 1526, 1869
BsnI GGCC 5 cut(s) 63, 363, 1441, 1551, 1974
BsoBI CYCGRG 5 cut(s) 347, 407, 612, 1494, 1854
Bsp1286I GDGCHC 7 cut(s) 382, 538, 546, 1399, 1495, 1757, 2018
Bsp13I TCCGGA 2 cut(s) 265, 280
Bsp19I CCATGG 2 cut(s) 1174, 2041
BspACI CCGC 9 cut(s) 43, 46, 159, 1171, 1606, 1636, 1837, 1980, 2019
BspANI GGCC 5 cut(s) 63, 363, 1441, 1551, 1974
BspCNI CTCAG 4 cut(s) 544, 690, 734, 1087
BspEI TCCGGA 2 cut(s) 265, 280
BspHI TCATGA 1 cut(s) 1162
BspMAI CTGCAG 1 cut(s) 1744
BspPI GGATC 6 cut(s) 492, 847, 1304, 1410, 1423, 1866
BspT107I GGYRCC 3 cut(s) 39, 143, 1396
BsrBI CCGCTC 2 cut(s) 161, 1837
BsrDI GCAATG 1 cut(s) 1939
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 4 cut(s) 12, 856, 1236, 1520
BssAI RCCGGY 1 cut(s) 393
BssNI GRCGYC 2 cut(s) 40, 1024
BssSI CACGAG 1 cut(s) 942
BssT1I CCWWGG 4 cut(s) 1174, 1631, 1788, 2041
Bst2BI CACGAG 1 cut(s) 942
Bst2UI CCWGG 7 cut(s) 365, 845, 983, 1390, 1410, 1449, 1888
Bst4CI ACNGT 3 cut(s) 924, 1682, 1877
Bst6I CTCTTC 4 cut(s) 160, 1252, 1917, 2019
BstACI GRCGYC 2 cut(s) 40, 1024
BstBAI YACGTR 3 cut(s) 1265, 1403, 2000
BstC8I GCNNGC 3 cut(s) 254, 395, 591
BstDEI CTNAG 6 cut(s) 552, 698, 721, 974, 1095, 1758
BstDSI CCRYGG 3 cut(s) 122, 1174, 2041
BstENI CCTNNNNNAGG 1 cut(s) 1452
BstF5I GGATG 2 cut(s) 1360, 2035
BstH2I RGCGCY 2 cut(s) 43, 1462
BstHHI GCGC 3 cut(s) 42, 135, 1461
BstMAI GTCTC 4 cut(s) 219, 476, 1125, 1852
BstMWI GCNNNNNNNGC 8 cut(s) 39, 141, 200, 329, 1328, 1394, 1980, 1989
BstNI CCWGG 7 cut(s) 365, 845, 983, 1390, 1410, 1449, 1888
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 8 cut(s) 363, 843, 981, 1211, 1388, 1408, 1447, 1886
BstSFI CTRYAG 4 cut(s) 1740, 1873, 1908, 1959
BstSLI GKGCMC 1 cut(s) 1399
BstSNI TACGTA 1 cut(s) 2000
BstV1I GCAGC 1 cut(s) 1995
BstX2I RGATCY 3 cut(s) 497, 852, 1415
BstYI RGATCY 3 cut(s) 497, 852, 1415
BsuRI GGCC 5 cut(s) 63, 363, 1441, 1551, 1974
BtgI CCRYGG 3 cut(s) 122, 1174, 2041
BtgZI GCGATG 1 cut(s) 14
BtsCI GGATG 2 cut(s) 1360, 2035
BtsI GCAGTG 2 cut(s) 1002, 2065
BtsIMutI CAGTG 3 cut(s) 863, 1002, 2065
Cac8I GCNNGC 3 cut(s) 254, 395, 591
CaiI CAGNNNCTG 2 cut(s) 766, 1069
CciI TCATGA 1 cut(s) 1162
CfoI GCGC 3 cut(s) 42, 135, 1461
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 5 cut(s) 361, 847, 1127, 1406, 1439
CseI GACGC 3 cut(s) 1013, 1337, 1751
CsiI ACCWGGT 2 cut(s) 843, 981
Csp6I GTAC 5 cut(s) 247, 957, 1182, 1262, 1997
CviAII CATG 9 cut(s) 443, 586, 590, 618, 671, 1004, 1163, 1175, 2042
CviQI GTAC 5 cut(s) 247, 957, 1182, 1262, 1997
DdeI CTNAG 6 cut(s) 552, 698, 721, 974, 1095, 1758
DinI GGCGCC 1 cut(s) 41
DraIII CACNNNGTG 2 cut(s) 932, 1403
EaeI YGGCCR 1 cut(s) 1972
Eam1104I CTCTTC 4 cut(s) 160, 1252, 1917, 2019
EarI CTCTTC 4 cut(s) 160, 1252, 1917, 2019
EciI GGCGGA 1 cut(s) 1621
Ecl136II GAGCTC 1 cut(s) 536
Eco105I TACGTA 1 cut(s) 2000
Eco130I CCWWGG 4 cut(s) 1174, 1631, 1788, 2041
Eco24I GRGCYC 5 cut(s) 382, 538, 1495, 1757, 2018
Eco47I GGWCC 3 cut(s) 847, 1127, 1406
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 3 cut(s) 666, 1128, 2043
Eco72I CACGTG 1 cut(s) 1403
Eco88I CYCGRG 5 cut(s) 347, 407, 612, 1494, 1854
EcoICRI GAGCTC 1 cut(s) 536
EcoNI CCTNNNNNAGG 1 cut(s) 1452
EcoO109I RGGNCCY 2 cut(s) 1127, 1439
EcoRI GAATTC 1 cut(s) 915
EcoRII CCWGG 7 cut(s) 363, 843, 981, 1388, 1408, 1447, 1886
EcoT14I CCWWGG 4 cut(s) 1174, 1631, 1788, 2041
EcoT22I ATGCAT 4 cut(s) 420, 591, 595, 1111
EcoT38I GRGCYC 5 cut(s) 382, 538, 1495, 1757, 2018
EgeI GGCGCC 1 cut(s) 41
EheI GGCGCC 1 cut(s) 41
ErhI CCWWGG 4 cut(s) 1174, 1631, 1788, 2041
FaeI CATG 9 cut(s) 446, 589, 593, 621, 674, 1007, 1166, 1178, 2045
FaqI GGGAC 5 cut(s) 691, 1140, 1195, 1526, 1869
FatI CATG 9 cut(s) 442, 585, 589, 617, 670, 1003, 1162, 1174, 2041
FauI CCCGC 2 cut(s) 1629, 2026
FauNDI CATATG 1 cut(s) 595
Fnu4HI GCNGC 5 cut(s) 43, 46, 1838, 1981, 1984
FokI GGATG 2 cut(s) 1367, 2042
FriOI GRGCYC 5 cut(s) 382, 538, 1495, 1757, 2018
Fsp4HI GCNGC 5 cut(s) 43, 46, 1838, 1981, 1984
FspBI CTAG 2 cut(s) 260, 1718
GlaI GCGC 3 cut(s) 41, 134, 1460
GluI GCNGC 5 cut(s) 43, 46, 1838, 1981, 1984
GsaI CCCAGC 1 cut(s) 1512
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 2 cut(s) 43, 1462
HaeIII GGCC 5 cut(s) 63, 363, 1441, 1551, 1974
HapII CCGG 7 cut(s) 141, 222, 266, 281, 394, 1213, 1750
HgaI GACGC 3 cut(s) 1013, 1337, 1751
HhaI GCGC 3 cut(s) 42, 135, 1461
Hin1I GRCGYC 2 cut(s) 40, 1024
Hin1II CATG 9 cut(s) 446, 589, 593, 621, 674, 1007, 1166, 1178, 2045
Hin6I GCGC 3 cut(s) 40, 133, 1459
HinP1I GCGC 3 cut(s) 40, 133, 1459
HinfI GANTC 9 cut(s) 104, 309, 368, 646, 686, 1609, 1714, 1882, 2063
HpaII CCGG 7 cut(s) 141, 222, 266, 281, 394, 1213, 1750
Hpy166II GTNNAC 5 cut(s) 53, 758, 819, 1184, 1475
Hpy8I GTNNAC 5 cut(s) 53, 758, 819, 1184, 1475
Hpy99I CGWCG 2 cut(s) 113, 1767
HpyAV CCTTC 3 cut(s) 319, 1143, 1794
HpyCH4III ACNGT 3 cut(s) 924, 1682, 1877
HpyCH4IV ACGT 4 cut(s) 1264, 1402, 1600, 1999
HpyF10VI GCNNNNNNNGC 8 cut(s) 39, 141, 200, 329, 1328, 1394, 1980, 1989
HpyF3I CTNAG 6 cut(s) 552, 698, 721, 974, 1095, 1758
HpySE526I ACGT 4 cut(s) 1264, 1402, 1600, 1999
Hsp92I GRCGYC 2 cut(s) 40, 1024
Hsp92II CATG 9 cut(s) 446, 589, 593, 621, 674, 1007, 1166, 1178, 2045
HspAI GCGC 3 cut(s) 40, 133, 1459
KasI GGCGCC 1 cut(s) 39
KflI GGGWCCC 1 cut(s) 1127
Kpn2I TCCGGA 2 cut(s) 265, 280
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
LmnI GCTCC 8 cut(s) 130, 268, 283, 385, 435, 1365, 1752, 2013
Lsp1109I GCAGC 1 cut(s) 1995
LweI GCATC 7 cut(s) 405, 1056, 1096, 1118, 1309, 1906, 1935
MabI ACCWGGT 2 cut(s) 843, 981
MaeI CTAG 2 cut(s) 260, 1718
MaeII ACGT 4 cut(s) 1264, 1402, 1600, 1999
MaeIII GTNAC 7 cut(s) 604, 924, 977, 1610, 1658, 1676, 1802
MbiI CCGCTC 2 cut(s) 161, 1837
MfeI CAATTG 1 cut(s) 1468
MflI RGATCY 3 cut(s) 497, 852, 1415
MhlI GDGCHC 7 cut(s) 382, 538, 546, 1399, 1495, 1757, 2018
MlsI TGGCCA 1 cut(s) 1974
MluNI TGGCCA 1 cut(s) 1974
Mly113I GGCGCC 1 cut(s) 40
MlyI GAGTC 5 cut(s) 318, 362, 1618, 1723, 1891
MmeI TCCRAC 3 cut(s) 132, 429, 786
Mox20I TGGCCA 1 cut(s) 1974
Mph1103I ATGCAT 4 cut(s) 420, 591, 595, 1111
MroI TCCGGA 2 cut(s) 265, 280
MroNI GCCGGC 1 cut(s) 393
MscI TGGCCA 1 cut(s) 1974
MseI TTAA 7 cut(s) 489, 1031, 1082, 1116, 1305, 1373, 2071
MslI CAYNNNNRTG 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 1974
MspA1I CMGCKG 2 cut(s) 573, 2021
MspI CCGG 7 cut(s) 141, 222, 266, 281, 394, 1213, 1750
MspR9I CCNGG 8 cut(s) 365, 845, 983, 1213, 1390, 1410, 1449, 1888
MunI CAATTG 1 cut(s) 1468
MvaI CCWGG 7 cut(s) 365, 845, 983, 1390, 1410, 1449, 1888
MwoI GCNNNNNNNGC 8 cut(s) 39, 141, 200, 329, 1328, 1394, 1980, 1989
NaeI GCCGGC 1 cut(s) 395
NarI GGCGCC 1 cut(s) 40
NciI CCSGG 1 cut(s) 1213
NcoI CCATGG 2 cut(s) 1174, 2041
NdeI CATATG 1 cut(s) 595
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 9 cut(s) 446, 589, 593, 621, 674, 1007, 1166, 1178, 2045
NmeAIII GCCGAG 1 cut(s) 1000
NmuCI GTSAC 4 cut(s) 924, 977, 1610, 1802
NsiI ATGCAT 4 cut(s) 420, 591, 595, 1111
NspI RCATGY 1 cut(s) 593
PaeI GCATGC 1 cut(s) 593
PaeR7I CTCGAG 3 cut(s) 347, 612, 1494
PagI TCATGA 1 cut(s) 1162
PasI CCCWGGG 1 cut(s) 1887
PcsI WCGNNNNNNNCGW 1 cut(s) 1861
PdiI GCCGGC 1 cut(s) 395
PfeI GAWTC 4 cut(s) 104, 646, 686, 2063
Pfl23II CGTACG 1 cut(s) 1996
PflFI GACNNNGTC 2 cut(s) 845, 983
PfoI TCCNGGA 1 cut(s) 1211
PkrI GCNGC 5 cut(s) 44, 47, 1839, 1982, 1985
PleI GAGTC 5 cut(s) 317, 362, 1617, 1722, 1890
PluTI GGCGCC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 1403
PmlI CACGTG 1 cut(s) 1403
PpsI GAGTC 5 cut(s) 317, 362, 1617, 1722, 1890
Ppu21I YACGTR 3 cut(s) 1265, 1403, 2000
PpuMI RGGWCCY 1 cut(s) 1127
PshBI ATTAAT 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 1127
Psp6I CCWGG 7 cut(s) 363, 843, 981, 1388, 1408, 1447, 1886
PspCI CACGTG 1 cut(s) 1403
PspFI CCCAGC 1 cut(s) 1508
PspGI CCWGG 7 cut(s) 363, 843, 981, 1388, 1408, 1447, 1886
PspLI CGTACG 1 cut(s) 1996
PspPI GGNCC 5 cut(s) 361, 847, 1127, 1406, 1439
PspPPI RGGWCCY 1 cut(s) 1127
PspXI VCTCGAGB 1 cut(s) 347
PstI CTGCAG 1 cut(s) 1744
PstNI CAGNNNCTG 2 cut(s) 766, 1069
PsuI RGATCY 3 cut(s) 497, 852, 1415
PsyI GACNNNGTC 2 cut(s) 845, 983
PvuII CAGCTG 1 cut(s) 573
RsaI GTAC 5 cut(s) 248, 958, 1183, 1263, 1998
RsaNI GTAC 5 cut(s) 247, 957, 1182, 1262, 1997
RseI CAYNNNNRTG 1 cut(s) 594
SacI GAGCTC 1 cut(s) 538
SaqAI TTAA 7 cut(s) 489, 1031, 1082, 1116, 1305, 1373, 2071
SatI GCNGC 5 cut(s) 43, 46, 1838, 1981, 1984
Sau96I GGNCC 5 cut(s) 361, 847, 1127, 1406, 1439
SchI GAGTC 5 cut(s) 318, 362, 1618, 1723, 1891
ScrFI CCNGG 8 cut(s) 365, 845, 983, 1213, 1390, 1410, 1449, 1888
SduI GDGCHC 7 cut(s) 382, 538, 546, 1399, 1495, 1757, 2018
SexAI ACCWGGT 2 cut(s) 843, 981
SfaNI GCATC 7 cut(s) 405, 1056, 1096, 1118, 1309, 1906, 1935
SfcI CTRYAG 4 cut(s) 1740, 1873, 1908, 1959
SfoI GGCGCC 1 cut(s) 41
Sfr274I CTCGAG 3 cut(s) 347, 612, 1494
SinI GGWCC 3 cut(s) 847, 1127, 1406
SlaI CTCGAG 3 cut(s) 347, 612, 1494
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 5 cut(s) 347, 539, 612, 750, 1494
SmoI CTYRAG 5 cut(s) 347, 539, 612, 750, 1494
SnaBI TACGTA 1 cut(s) 2000
SphI GCATGC 1 cut(s) 593
SsiI CCGC 9 cut(s) 43, 46, 159, 1171, 1606, 1636, 1837, 1980, 2019
SspDI GGCGCC 1 cut(s) 39
SspI AATATT 1 cut(s) 429
SspMI CTAG 2 cut(s) 260, 1718
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 8 cut(s) 363, 843, 981, 1211, 1388, 1408, 1447, 1886
StyI CCWWGG 4 cut(s) 1174, 1631, 1788, 2041
TaaI ACNGT 3 cut(s) 924, 1682, 1877
TaiI ACGT 4 cut(s) 1267, 1405, 1603, 2002
TaqI TCGA 8 cut(s) 16, 167, 307, 348, 613, 1012, 1495, 1648
TauI GCSGC 4 cut(s) 45, 48, 1840, 1983
TfiI GAWTC 4 cut(s) 104, 646, 686, 2063
Tru1I TTAA 7 cut(s) 489, 1031, 1082, 1116, 1305, 1373, 2071
Tru9I TTAA 7 cut(s) 489, 1031, 1082, 1116, 1305, 1373, 2071
TscAI CASTG 3 cut(s) 863, 1002, 2065
TseFI GTSAC 4 cut(s) 924, 977, 1610, 1802
TseI GCWGC 1 cut(s) 1983
Tsp45I GTSAC 4 cut(s) 924, 977, 1610, 1802
TspDTI ATGAA 3 cut(s) 574, 1005, 1292
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 3 cut(s) 863, 1002, 2065
Tth111I GACNNNGTC 2 cut(s) 845, 983
VpaK11BI GGWCC 3 cut(s) 847, 1127, 1406
VspI ATTAAT 1 cut(s) 489
XagI CCTNNNNNAGG 1 cut(s) 1452
XapI RAATTY 5 cut(s) 515, 782, 915, 1301, 1382
XbaI TCTAGA 1 cut(s) 1717
XceI RCATGY 1 cut(s) 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 1814
XhoI CTCGAG 3 cut(s) 347, 612, 1494
XspI CTAG 2 cut(s) 260, 1718
Zsp2I ATGCAT 4 cut(s) 420, 591, 595, 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.