Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Forward (+)

36912275 .. 36913374

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1163800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTAAATATCCGCTGGCTTCCCCGCCGTCAACATCTCAGCCTCTCTTACACTCTAAACACCAAGCTCAACTTCCACTCCTTGTCCCAACCCAAGGTCGACGAATTCGATGACTTCTTGCCGTGGCTGAAGCGGAAGGCCGGCGCAGATATTTCGTCAGCGCTTTCGATTGGGAAATCGGCGTACGGAACGTCTCTGTTTGCTTCAAAGAGTATAACGGCTGGAGACTGCGTTTTGAAGGTTCCGTACAGCGTGCAACTAGCTTCGGATAATCTCGTTCCAGAACTGAAAGATTTGTTGAGTGATGAAGTTGGCGATGCTGCAAAGCTTGCCGCTGTCGTTTTGTTAGAGCAGAGAATGGGCAATGATTCCGGGTGGGCCCCTTACATCCGCCGGCTTCCTTGCCCGGAGGAGATGCATTGCACGATATTTTGGAGTGACGATGAGTTGGAGCTGATTCGCCAAAGCTCTGTATATCAGGAAACAATTAACCAAAGATCTCAAATCGAAAAGGAATTTTTGGCAATTAGGATGGTAAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

182

Amino Acids

20.48

Weight (kDa)

5.64

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	5 cut(s)	13, 25, 133, 333, 391
AcsI	RAATTY	2 cut(s)	104, 515
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	2 cut(s)	185, 248
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	207, 238
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	5 cut(s)	67, 263, 328, 454, 468
AluI	AGCT	5 cut(s)	67, 263, 328, 454, 468
Alw26I	GTCTC	2 cut(s)	198, 219
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	2 cut(s)	138, 378
ApaI	GGGCCC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	104, 515
AspLEI	GCGC	2 cut(s)	146, 163
AspS9I	GGNCC	2 cut(s)	378, 379
AsuC2I	CCSGG	2 cut(s)	373, 407
BaeGI	GKGCMC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	382
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	3 cut(s)	12, 106, 234
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BcnI	CCSGG	2 cut(s)	373, 407
BcoDI	GTCTC	2 cut(s)	198, 219
BfaI	CTAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	164
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	2 cut(s)	321, 333
BlsI	GCNGC	2 cut(s)	322, 334
Bme1390I	CCNGG	2 cut(s)	373, 407
BmgT120I	GGNCC	2 cut(s)	378, 379
BmiI	GGNNCC	3 cut(s)	243, 380, 381
BmrFI	CCNGG	2 cut(s)	373, 407
BmsI	GCATC	2 cut(s)	307, 405
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	2 cut(s)	373, 407
BsaJI	CCNNGG	2 cut(s)	93, 122
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	2 cut(s)	140, 393
Bse3DI	GCAATG	2 cut(s)	370, 418
BseDI	CCNNGG	2 cut(s)	93, 122
BseGI	GGATG	2 cut(s)	387, 537
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	2 cut(s)	370, 418
BseMII	CTCAG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	425
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	2 cut(s)	140, 380
BsiSI	CCGG	4 cut(s)	141, 372, 394, 407
BsiWI	CGTACG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	198, 219
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	140, 380
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	497
BspACI	CCGC	5 cut(s)	13, 25, 133, 333, 391
BspANI	GGCC	2 cut(s)	140, 380
BspCNI	CTCAG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	243, 380, 381
BsrDI	GCAATG	2 cut(s)	370, 418
BsrFI	RCCGGY	2 cut(s)	140, 393
BssAI	RCCGGY	2 cut(s)	140, 393
BssECI	CCNNGG	2 cut(s)	93, 122
BssMI	GATC	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	5 cut(s)	17, 142, 254, 330, 395
BstDEI	CTNAG	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	387, 537
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	146, 163
BstKTI	GATC	1 cut(s)	500
BstMAI	GTCTC	2 cut(s)	198, 219
BstMBI	GATC	1 cut(s)	497
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	371, 405
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	140, 380
BtgI	CCRYGG	1 cut(s)	122
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	387, 537
Cac8I	GCNNGC	5 cut(s)	17, 142, 254, 330, 395
CfoI	GCGC	2 cut(s)	146, 163
Cfr10I	RCCGGY	2 cut(s)	140, 393
Cfr13I	GGNCC	2 cut(s)	378, 379
Csp6I	GTAC	2 cut(s)	184, 247
CviQI	GTAC	2 cut(s)	184, 247
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	499
DpnII	GATC	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	382
Eco47III	AGCGCT	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	198
FaiI	YATR	2 cut(s)	215, 475
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	70
FauI	CCCGC	1 cut(s)	32
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	321, 333
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	321, 333
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	2 cut(s)	145, 162
GluI	GCNGC	2 cut(s)	321, 333
GsuI	CTGGAG	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	140, 380
HapII	CCGG	4 cut(s)	141, 372, 394, 407
HhaI	GCGC	2 cut(s)	146, 163
Hin6I	GCGC	2 cut(s)	144, 161
HinP1I	GCGC	2 cut(s)	144, 161
HincII	GTYRAC	2 cut(s)	32, 100
HindII	GTYRAC	2 cut(s)	32, 100
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	2 cut(s)	368, 457
HpaII	CCGG	4 cut(s)	141, 372, 394, 407
Hpy166II	GTNNAC	2 cut(s)	32, 100
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	281, 479
Hpy8I	GTNNAC	2 cut(s)	32, 100
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	130, 232
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	256, 323, 418, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	191
HspAI	GCGC	2 cut(s)	144, 161
KroI	GCCGGC	2 cut(s)	140, 393
KroNI	GCCGGC	2 cut(s)	142, 395
Kzo9I	GATC	1 cut(s)	497
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	7 cut(s)	154, 207, 294, 385, 407, 420, 464
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	2 cut(s)	307, 405
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	1 cut(s)	499
MboI	GATC	1 cut(s)	497
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	4 cut(s)	104, 486, 515, 525
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	2 cut(s)	53, 403
Mph1103I	ATGCAT	1 cut(s)	420
MroNI	GCCGGC	2 cut(s)	140, 393
MseI	TTAA	1 cut(s)	489
MspA1I	CMGCKG	2 cut(s)	15, 335
MspI	CCGG	4 cut(s)	141, 372, 394, 407
MspR9I	CCNGG	2 cut(s)	373, 407
MwoI	GCNNNNNNNGC	1 cut(s)	329
NaeI	GCCGGC	2 cut(s)	142, 395
NciI	CCSGG	2 cut(s)	373, 407
NdeII	GATC	1 cut(s)	497
NgoMIV	GCCGGC	2 cut(s)	140, 393
NlaIV	GGNNCC	3 cut(s)	243, 380, 381
NmuCI	GTSAC	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdiI	GCCGGC	2 cut(s)	142, 395
PfeI	GAWTC	2 cut(s)	368, 457
Pfl23II	CGTACG	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	322, 334
PspLI	CGTACG	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	243, 380, 381
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	2 cut(s)	378, 379
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	2 cut(s)	185, 248
RsaNI	GTAC	2 cut(s)	184, 247
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	2 cut(s)	321, 333
Sau3AI	GATC	1 cut(s)	497
Sau96I	GGNCC	2 cut(s)	378, 379
ScrFI	CCNGG	2 cut(s)	373, 407
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	8 cut(s)	69, 99, 194, 243, 265, 330, 456, 470
SfaNI	GCATC	2 cut(s)	307, 405
Sse9I	AATT	4 cut(s)	104, 486, 515, 525
SsiI	CCGC	5 cut(s)	13, 25, 133, 333, 391
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	371, 405
StyI	CCWWGG	1 cut(s)	93
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	99, 108, 167, 507
TasI	AATT	4 cut(s)	104, 486, 515, 525
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	368, 457
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	2 cut(s)	201, 234
XapI	RAATTY	2 cut(s)	104, 515
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.