MD07G1184300.v1.1

serine arginine-rich splicing factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
26531591 .. 26535062
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1184300.v1.1.491

Sequence Viewer

Length: 879 bp
ATGGTGGTTCACGGCTCTATGTTGGCCGCTTGTCATCTCGGACAAGATCACGCGAACTTGAAGACGTATTCAGCAGATATGGAAGTACGTGATGTGGATATGAAGCGCGACTTTGCCTTTGTTGAATTTAGTGACCCCCGGGATGCTGATGATGCAAGATATAGCCTGAACGGTCGTGATGTTGATGGGAGCCGGATAATTGTGGAATTTGCCAGGGGGGCACCACGTGGTCCTGGTGGATCTCGGGAGTATCTTGGGAGAGGCCCTCCTCCAGGATCAGGGCGCTGTTTTAATTGTGGGCTGGATGGACACTGGGCTCGAGATTGCAAGGCTGGAGACTGGAAGAATAAGTGTTATCGTTGTGGGGAACGAGGCCACATTGAAAGAAATTGTCAGAATAGTCCAAAGAAAACAACTAAACGTGGGCGTAGTCTCTCACGTTCACCAAGTCCAAGGCGGGGTAGAAGTCGAAGCCGTAGCTACAGCAGGGATCATAGTTACAGCCGTTCCCGCTCACCCGTGAGGGGAGAACGGAGTTTGGAGAGAAGATCAAGGAGTCCTCATGACAGCCGGAGCCCTAAGCGTCGCAGGGGTTCACCACCACTCTCCAAGGGGAGGAAGCATGATAGAACTCCCGAAGGGAGGAGCCCACAAGAGCGGGGTAGCCTCTCCCCGCAGGATCGCAGATCTGACGACAGTAGGAGTCCCAGGGCAAAGAGCAGAAGCCCTATAAATGATGTTGAAGGCGACAGCAATGGAGATAGGAAGCATAGAAGCCCTGTTGAAGAAAACAGCCGCAGCCGCAGCCCAAGCCCTGTCCGCAGGAGTGATGATGAAGACATCCCTGGTTCCCCGAGAGGCAGTGAATCACCAGCTTAA

Protein Analysis

293

Amino Acids

32.75

Weight (kDa)

10.44

Isoelectric Point (pI)

97.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 32 - 66 2.2e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 220
AccBSI CCGCTC 2 cut(s) 513, 658
AccII CGCG 2 cut(s) 53, 108
AciI CCGC 8 cut(s) 27, 457, 511, 658, 674, 796, 802, 820
AclWI GGATC 4 cut(s) 247, 283, 498, 687
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 2 cut(s) 125, 206
AcvI CACGTG 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 227
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 6 cut(s) 272, 278, 458, 524, 615, 642
AgsI TTSAA 5 cut(s) 61, 125, 383, 743, 785
AjnI CCWGG 5 cut(s) 212, 232, 271, 707, 844
AluBI AGCT 2 cut(s) 480, 875
AluI AGCT 2 cut(s) 480, 875
Alw26I GTCTC 2 cut(s) 330, 437
AlwI GGATC 4 cut(s) 247, 283, 498, 687
Ama87I CYCGRG 4 cut(s) 138, 243, 318, 853
AoxI GGCC 3 cut(s) 24, 262, 373
ApeKI GCWGC 2 cut(s) 798, 804
ApoI RAATTY 2 cut(s) 125, 206
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspLEI GCGC 2 cut(s) 108, 285
AspS9I GGNCC 2 cut(s) 230, 263
AsuC2I CCSGG 2 cut(s) 139, 140
AsuHPI GGTGA 4 cut(s) 435, 507, 588, 861
AvaI CYCGRG 4 cut(s) 138, 243, 318, 853
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 220
BanII GRGCYC 3 cut(s) 319, 578, 650
BbrPI CACGTG 1 cut(s) 227
BbsI GAAGAC 2 cut(s) 68, 843
BbvI GCAGC 2 cut(s) 810, 816
BccI CCATC 2 cut(s) 179, 299
BceAI ACGGC 3 cut(s) 28, 459, 489
BciT130I CCWGG 5 cut(s) 214, 234, 273, 709, 846
BcnI CCSGG 2 cut(s) 139, 140
BcoDI GTCTC 2 cut(s) 330, 437
BfmI CTRYAG 1 cut(s) 481
BfoI RGCGCY 1 cut(s) 286
BglI GCCNNNNNGGC 1 cut(s) 218
BglII AGATCT 1 cut(s) 686
BisI GCNGC 5 cut(s) 27, 796, 799, 802, 805
BlsI GCNGC 5 cut(s) 28, 797, 800, 803, 806
Bme1390I CCNGG 7 cut(s) 139, 140, 214, 234, 273, 709, 846
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 4 cut(s) 138, 243, 318, 853
BmgT120I GGNCC 2 cut(s) 230, 263
BmiI GGNNCC 5 cut(s) 191, 222, 575, 647, 850
BmrFI CCNGG 7 cut(s) 139, 140, 214, 234, 273, 709, 846
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 2 cut(s) 133, 142
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 2 cut(s) 68, 843
BplI GAGNNNNNCTC 2 cut(s) 250, 282
BpmI CTGGAG 2 cut(s) 255, 354
Bpu10I CCTNAGC 1 cut(s) 579
BpuMI CCSGG 2 cut(s) 139, 140
BsaAI YACGTR 2 cut(s) 89, 227
BsaJI CCNNGG 8 cut(s) 137, 138, 213, 452, 609, 707, 708, 844
Bsc4I CCNNNNNNNGG 6 cut(s) 272, 278, 458, 524, 615, 642
Bse1I ACTGG 2 cut(s) 317, 344
Bse3DI GCAATG 1 cut(s) 760
BseBI CCWGG 5 cut(s) 214, 234, 273, 709, 846
BseDI CCNNGG 8 cut(s) 137, 138, 213, 452, 609, 707, 708, 844
BseGI GGATG 3 cut(s) 148, 310, 840
BseLI CCNNNNNNNGG 6 cut(s) 272, 278, 458, 524, 615, 642
BseMI GCAATG 1 cut(s) 760
BseNI ACTGG 2 cut(s) 317, 344
BseRI GAGGAG 2 cut(s) 258, 658
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 2 cut(s) 810, 816
Bsh1236I CGCG 2 cut(s) 53, 108
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 26, 264, 375
BshNI GGYRCC 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 175
BsiHKCI CYCGRG 4 cut(s) 138, 243, 318, 853
BsiSI CCGG 3 cut(s) 139, 193, 571
BslFI GGGAC 1 cut(s) 690
BslI CCNNNNNNNGG 6 cut(s) 272, 278, 458, 524, 615, 642
BsmAI GTCTC 2 cut(s) 330, 437
BsmFI GGGAC 1 cut(s) 690
BsnI GGCC 3 cut(s) 26, 264, 375
BsoBI CYCGRG 4 cut(s) 138, 243, 318, 853
Bsp1286I GDGCHC 4 cut(s) 223, 319, 578, 650
Bsp143I GATC 7 cut(s) 46, 239, 275, 490, 548, 679, 686
BspACI CCGC 8 cut(s) 27, 457, 511, 658, 674, 796, 802, 820
BspANI GGCC 3 cut(s) 26, 264, 375
BspFNI CGCG 2 cut(s) 53, 108
BspHI TCATGA 1 cut(s) 562
BspLI GGNNCC 5 cut(s) 191, 222, 575, 647, 850
BspPI GGATC 4 cut(s) 247, 283, 498, 687
BspT107I GGYRCC 1 cut(s) 220
BsrBI CCGCTC 2 cut(s) 513, 658
BsrDI GCAATG 1 cut(s) 760
BsrI ACTGG 2 cut(s) 317, 344
BssECI CCNNGG 8 cut(s) 137, 138, 213, 452, 609, 707, 708, 844
BssMI GATC 7 cut(s) 46, 239, 275, 490, 548, 679, 686
BssT1I CCWWGG 2 cut(s) 452, 609
Bst2UI CCWGG 5 cut(s) 214, 234, 273, 709, 846
Bst4CI ACNGT 2 cut(s) 173, 698
BstBAI YACGTR 2 cut(s) 89, 227
BstDEI CTNAG 1 cut(s) 579
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 148, 310, 840
BstFNI CGCG 2 cut(s) 53, 108
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 2 cut(s) 108, 285
BstKTI GATC 7 cut(s) 49, 242, 278, 493, 551, 682, 689
BstMAI GTCTC 2 cut(s) 330, 437
BstMBI GATC 7 cut(s) 46, 239, 275, 490, 548, 679, 686
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 7 cut(s) 152, 218, 510, 801, 804, 810, 819
BstNI CCWGG 5 cut(s) 214, 234, 273, 709, 846
BstSCI CCNGG 7 cut(s) 137, 138, 212, 232, 271, 707, 844
BstSFI CTRYAG 1 cut(s) 481
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 2 cut(s) 53, 108
BstV1I GCAGC 2 cut(s) 810, 816
BstV2I GAAGAC 2 cut(s) 68, 843
BstX2I RGATCY 2 cut(s) 239, 686
BstYI RGATCY 2 cut(s) 239, 686
BsuRI GGCC 3 cut(s) 26, 264, 375
BtsCI GGATG 3 cut(s) 148, 310, 840
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 2 cut(s) 310, 868
CciI TCATGA 1 cut(s) 562
CfoI GCGC 2 cut(s) 108, 285
Cfr13I GGNCC 2 cut(s) 230, 263
Cfr9I CCCGGG 1 cut(s) 138
CseI GACGC 1 cut(s) 572
Csp6I GTAC 1 cut(s) 86
CviAII CATG 2 cut(s) 563, 623
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 579
DpnI GATC 7 cut(s) 48, 241, 277, 492, 550, 681, 688
DpnII GATC 7 cut(s) 46, 239, 275, 490, 548, 679, 686
DraIII CACNNNGTG 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 452, 609
Eco24I GRGCYC 3 cut(s) 319, 578, 650
Eco47I GGWCC 1 cut(s) 230
Eco72I CACGTG 1 cut(s) 227
Eco88I CYCGRG 4 cut(s) 138, 243, 318, 853
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 5 cut(s) 212, 232, 271, 707, 844
EcoT14I CCWWGG 2 cut(s) 452, 609
EcoT38I GRGCYC 3 cut(s) 319, 578, 650
ErhI CCWWGG 2 cut(s) 452, 609
FaeI CATG 2 cut(s) 566, 626
FaiI YATR 9 cut(s) 20, 80, 101, 162, 495, 564, 624, 731, 771
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 690
FatI CATG 2 cut(s) 562, 622
FauI CCCGC 4 cut(s) 450, 518, 651, 681
Fnu4HI GCNGC 5 cut(s) 27, 796, 799, 802, 805
FokI GGATG 3 cut(s) 155, 317, 827
FriOI GRGCYC 3 cut(s) 319, 578, 650
Fsp4HI GCNGC 5 cut(s) 27, 796, 799, 802, 805
GlaI GCGC 2 cut(s) 107, 284
GluI GCNGC 5 cut(s) 27, 796, 799, 802, 805
GsuI CTGGAG 2 cut(s) 255, 354
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 3 cut(s) 26, 264, 375
HapII CCGG 3 cut(s) 139, 193, 571
HgaI GACGC 1 cut(s) 572
HhaI GCGC 2 cut(s) 108, 285
Hin1II CATG 2 cut(s) 566, 626
Hin6I GCGC 2 cut(s) 106, 283
HinP1I GCGC 2 cut(s) 106, 283
HinfI GANTC 3 cut(s) 556, 703, 866
HpaII CCGG 3 cut(s) 139, 193, 571
HphI GGTGA 4 cut(s) 435, 507, 588, 861
Hpy166II GTNNAC 3 cut(s) 10, 443, 596
Hpy188I TCNGA 3 cut(s) 41, 396, 691
Hpy188III TCNNGA 5 cut(s) 176, 245, 320, 563, 635
Hpy8I GTNNAC 3 cut(s) 10, 443, 596
Hpy99I CGWCG 1 cut(s) 588
HpyAV CCTTC 2 cut(s) 632, 737
HpyCH4III ACNGT 2 cut(s) 173, 698
HpyCH4IV ACGT 5 cut(s) 65, 88, 226, 421, 439
HpyCH4V TGCA 2 cut(s) 155, 327
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 218, 510, 801, 804, 810, 819
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 5 cut(s) 65, 88, 226, 421, 439
Hsp92II CATG 2 cut(s) 566, 626
HspAI GCGC 2 cut(s) 106, 283
Kzo9I GATC 7 cut(s) 46, 239, 275, 490, 548, 679, 686
LmnI GCTCC 3 cut(s) 189, 573, 645
Lsp1109I GCAGC 2 cut(s) 810, 816
LweI GCATC 2 cut(s) 133, 142
MaeII ACGT 5 cut(s) 65, 88, 226, 421, 439
MaeIII GTNAC 2 cut(s) 131, 497
MalI GATC 7 cut(s) 48, 241, 277, 492, 550, 681, 688
MbiI CCGCTC 2 cut(s) 513, 658
MboI GATC 7 cut(s) 46, 239, 275, 490, 548, 679, 686
MboII GAAGA 5 cut(s) 73, 355, 558, 797, 848
MflI RGATCY 2 cut(s) 239, 686
MhlI GDGCHC 4 cut(s) 223, 319, 578, 650
MluCI AATT 5 cut(s) 125, 198, 206, 292, 388
MlyI GAGTC 2 cut(s) 565, 712
MseI TTAA 2 cut(s) 291, 877
MspI CCGG 3 cut(s) 139, 193, 571
MspR9I CCNGG 7 cut(s) 139, 140, 214, 234, 273, 709, 846
MvaI CCWGG 5 cut(s) 214, 234, 273, 709, 846
MvnI CGCG 2 cut(s) 53, 108
MwoI GCNNNNNNNGC 7 cut(s) 152, 218, 510, 801, 804, 810, 819
NciI CCSGG 2 cut(s) 139, 140
NdeII GATC 7 cut(s) 46, 239, 275, 490, 548, 679, 686
NlaIII CATG 2 cut(s) 566, 626
NlaIV GGNNCC 5 cut(s) 191, 222, 575, 647, 850
NmuCI GTSAC 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 318
PagI TCATGA 1 cut(s) 562
PasI CCCWGGG 1 cut(s) 708
PfeI GAWTC 1 cut(s) 866
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 5 cut(s) 28, 797, 800, 803, 806
PleI GAGTC 2 cut(s) 564, 711
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 2 cut(s) 564, 711
Ppu21I YACGTR 2 cut(s) 89, 227
Psp6I CCWGG 5 cut(s) 212, 232, 271, 707, 844
PspCI CACGTG 1 cut(s) 227
PspGI CCWGG 5 cut(s) 212, 232, 271, 707, 844
PspN4I GGNNCC 5 cut(s) 191, 222, 575, 647, 850
PspPI GGNCC 2 cut(s) 230, 263
PsuI RGATCY 2 cut(s) 239, 686
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 291, 877
SatI GCNGC 5 cut(s) 27, 796, 799, 802, 805
Sau3AI GATC 7 cut(s) 46, 239, 275, 490, 548, 679, 686
Sau96I GGNCC 2 cut(s) 230, 263
SchI GAGTC 2 cut(s) 565, 712
ScrFI CCNGG 7 cut(s) 139, 140, 214, 234, 273, 709, 846
SduI GDGCHC 4 cut(s) 223, 319, 578, 650
SetI ASST 7 cut(s) 68, 91, 229, 424, 442, 482, 877
SfaNI GCATC 2 cut(s) 133, 142
SfcI CTRYAG 1 cut(s) 481
Sfr274I CTCGAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 318
SmaI CCCGGG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 5 cut(s) 125, 198, 206, 292, 388
SsiI CCGC 8 cut(s) 27, 457, 511, 658, 674, 796, 802, 820
StyD4I CCNGG 7 cut(s) 137, 138, 212, 232, 271, 707, 844
StyI CCWWGG 2 cut(s) 452, 609
TaaI ACNGT 2 cut(s) 173, 698
TaiI ACGT 5 cut(s) 68, 91, 229, 424, 442
TaqI TCGA 2 cut(s) 319, 469
TasI AATT 5 cut(s) 125, 198, 206, 292, 388
TauI GCSGC 3 cut(s) 29, 798, 804
TfiI GAWTC 1 cut(s) 866
Tru1I TTAA 2 cut(s) 291, 877
Tru9I TTAA 2 cut(s) 291, 877
TscAI CASTG 2 cut(s) 317, 868
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 2 cut(s) 798, 804
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 116, 849
TspGWI ACGGA 1 cut(s) 547
TspMI CCCGGG 1 cut(s) 138
TspRI CASTG 2 cut(s) 317, 868
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 270
XapI RAATTY 2 cut(s) 125, 206
XhoI CTCGAG 1 cut(s) 318
XmaI CCCGGG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.