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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 165 |
| AccII | CGCG | 1 cut(s) | 17 |
| AciI | CCGC | 1 cut(s) | 163 |
| AclWI | GGATC | 1 cut(s) | 88 |
| AcsI | RAATTY | 5 cut(s) | 279, 1075, 1136, 1228, 1356 |
| AfaI | GTAC | 1 cut(s) | 953 |
| AflIII | ACRYGT | 1 cut(s) | 750 |
| AgsI | TTSAA | 6 cut(s) | 528, 607, 771, 811, 1020, 1228 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 751 |
| AjiI | CACGTC | 1 cut(s) | 827 |
| AjnI | CCWGG | 2 cut(s) | 235, 1142 |
| AluBI | AGCT | 2 cut(s) | 318, 1332 |
| AluI | AGCT | 2 cut(s) | 318, 1332 |
| Alw26I | GTCTC | 3 cut(s) | 182, 702, 817 |
| AlwI | GGATC | 1 cut(s) | 88 |
| Ama87I | CYCGRG | 1 cut(s) | 138 |
| AoxI | GGCC | 1 cut(s) | 916 |
| ApoI | RAATTY | 5 cut(s) | 279, 1075, 1136, 1228, 1356 |
| AseI | ATTAAT | 1 cut(s) | 57 |
| AspLEI | GCGC | 1 cut(s) | 418 |
| AsuHPI | GGTGA | 4 cut(s) | 251, 302, 832, 914 |
| AsuII | TTCGAA | 1 cut(s) | 929 |
| AvaI | CYCGRG | 1 cut(s) | 138 |
| BanI | GGYRCC | 1 cut(s) | 165 |
| BbsI | GAAGAC | 1 cut(s) | 298 |
| BciT130I | CCWGG | 2 cut(s) | 237, 1144 |
| BclI | TGATCA | 1 cut(s) | 391 |
| BcoDI | GTCTC | 3 cut(s) | 182, 702, 817 |
| BfaI | CTAG | 4 cut(s) | 62, 77, 1067, 1205 |
| BfmI | CTRYAG | 1 cut(s) | 834 |
| BisI | GCNGC | 1 cut(s) | 164 |
| BlsI | GCNGC | 1 cut(s) | 165 |
| Bme1390I | CCNGG | 2 cut(s) | 237, 1144 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 751 |
| BmeT110I | CYCGRG | 1 cut(s) | 138 |
| BmgBI | CACGTC | 1 cut(s) | 827 |
| BmiI | GGNNCC | 3 cut(s) | 167, 789, 1121 |
| BmrFI | CCNGG | 2 cut(s) | 237, 1144 |
| BmsI | GCATC | 1 cut(s) | 290 |
| BpiI | GAAGAC | 1 cut(s) | 298 |
| BpmI | CTGGAG | 2 cut(s) | 219, 340 |
| Bpu14I | TTCGAA | 1 cut(s) | 929 |
| Bsa29I | ATCGAT | 2 cut(s) | 83, 398 |
| BsaAI | YACGTR | 1 cut(s) | 534 |
| BsaI | GGTCTC | 1 cut(s) | 182 |
| BsaJI | CCNNGG | 4 cut(s) | 139, 757, 791, 1143 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 289, 319 |
| Bse1I | ACTGG | 2 cut(s) | 192, 1245 |
| Bse3DI | GCAATG | 1 cut(s) | 1201 |
| BseBI | CCWGG | 2 cut(s) | 237, 1144 |
| BseCI | ATCGAT | 2 cut(s) | 83, 398 |
| BseDI | CCNNGG | 4 cut(s) | 139, 757, 791, 1143 |
| BseGI | GGATG | 2 cut(s) | 1114, 1347 |
| BseMI | GCAATG | 1 cut(s) | 1201 |
| BseNI | ACTGG | 2 cut(s) | 192, 1245 |
| Bsh1236I | CGCG | 1 cut(s) | 17 |
| Bsh1285I | CGRYCG | 1 cut(s) | 402 |
| BshFI | GGCC | 1 cut(s) | 918 |
| BshNI | GGYRCC | 1 cut(s) | 165 |
| BshVI | ATCGAT | 2 cut(s) | 83, 398 |
| BsiEI | CGRYCG | 1 cut(s) | 402 |
| BsiHKCI | CYCGRG | 1 cut(s) | 138 |
| BslFI | GGGAC | 1 cut(s) | 739 |
| BsmAI | GTCTC | 3 cut(s) | 182, 702, 817 |
| BsmBI | CGTCTC | 1 cut(s) | 817 |
| BsmFI | GGGAC | 1 cut(s) | 739 |
| BsnI | GGCC | 1 cut(s) | 918 |
| Bso31I | GGTCTC | 1 cut(s) | 182 |
| BsoBI | CYCGRG | 1 cut(s) | 138 |
| Bsp119I | TTCGAA | 1 cut(s) | 929 |
| Bsp68I | TCGCGA | 1 cut(s) | 17 |
| BspACI | CCGC | 1 cut(s) | 163 |
| BspANI | GGCC | 1 cut(s) | 918 |
| BspDI | ATCGAT | 2 cut(s) | 83, 398 |
| BspFNI | CGCG | 1 cut(s) | 17 |
| BspLI | GGNNCC | 3 cut(s) | 167, 789, 1121 |
| BspMAI | CTGCAG | 1 cut(s) | 838 |
| BspPI | GGATC | 1 cut(s) | 88 |
| BspT104I | TTCGAA | 1 cut(s) | 929 |
| BspT107I | GGYRCC | 1 cut(s) | 165 |
| BspTNI | GGTCTC | 1 cut(s) | 182 |
| BsrDI | GCAATG | 1 cut(s) | 1201 |
| BsrI | ACTGG | 2 cut(s) | 192, 1245 |
| BssECI | CCNNGG | 4 cut(s) | 139, 757, 791, 1143 |
| BssT1I | CCWWGG | 2 cut(s) | 757, 791 |
| Bst2UI | CCWGG | 2 cut(s) | 237, 1144 |
| Bst4CI | ACNGT | 1 cut(s) | 1277 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 326, 970 |
| BstBAI | YACGTR | 1 cut(s) | 534 |
| BstBI | TTCGAA | 1 cut(s) | 929 |
| BstF5I | GGATG | 2 cut(s) | 1114, 1347 |
| BstFNI | CGCG | 1 cut(s) | 17 |
| BstHHI | GCGC | 1 cut(s) | 418 |
| BstMAI | GTCTC | 3 cut(s) | 182, 702, 817 |
| BstMCI | CGRYCG | 1 cut(s) | 402 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 228 |
| BstNI | CCWGG | 2 cut(s) | 237, 1144 |
| BstNSI | RCATGY | 1 cut(s) | 1003 |
| BstSCI | CCNGG | 2 cut(s) | 235, 1142 |
| BstSFI | CTRYAG | 1 cut(s) | 834 |
| BstUI | CGCG | 1 cut(s) | 17 |
| BstV2I | GAAGAC | 1 cut(s) | 298 |
| Bsu15I | ATCGAT | 2 cut(s) | 83, 398 |
| BsuRI | GGCC | 1 cut(s) | 918 |
| BsuTUI | ATCGAT | 2 cut(s) | 83, 398 |
| BtrI | CACGTC | 1 cut(s) | 827 |
| BtsCI | GGATG | 2 cut(s) | 1114, 1347 |
| BtsI | GCAGTG | 1 cut(s) | 11 |
| BtsIMutI | CAGTG | 1 cut(s) | 11 |
| BtuMI | TCGCGA | 1 cut(s) | 17 |
| CfoI | GCGC | 1 cut(s) | 418 |
| ClaI | ATCGAT | 2 cut(s) | 83, 398 |
| Csp6I | GTAC | 1 cut(s) | 952 |
| CviAII | CATG | 4 cut(s) | 592, 621, 1000, 1283 |
| CviJI | RGCY | 6 cut(s) | 318, 730, 796, 918, 1122, 1332 |
| CviKI_1 | RGCY | 6 cut(s) | 318, 730, 796, 918, 1122, 1332 |
| CviQI | GTAC | 1 cut(s) | 952 |
| DriI | GACNNNNNGTC | 1 cut(s) | 751 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 326, 970 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 751 |
| EarI | CTCTTC | 3 cut(s) | 39, 326, 970 |
| Eco130I | CCWWGG | 2 cut(s) | 757, 791 |
| Eco31I | GGTCTC | 1 cut(s) | 182 |
| Eco88I | CYCGRG | 1 cut(s) | 138 |
| EcoRI | GAATTC | 1 cut(s) | 279 |
| EcoRII | CCWGG | 2 cut(s) | 235, 1142 |
| EcoT14I | CCWWGG | 2 cut(s) | 757, 791 |
| EcoT22I | ATGCAT | 1 cut(s) | 487 |
| ErhI | CCWWGG | 2 cut(s) | 757, 791 |
| Esp3I | CGTCTC | 1 cut(s) | 817 |
| FaeI | CATG | 4 cut(s) | 595, 624, 1003, 1286 |
| FaqI | GGGAC | 1 cut(s) | 739 |
| FatI | CATG | 4 cut(s) | 591, 620, 999, 1282 |
| FbaI | TGATCA | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 1 cut(s) | 164 |
| FokI | GGATG | 2 cut(s) | 1121, 1354 |
| Fsp4HI | GCNGC | 1 cut(s) | 164 |
| FspBI | CTAG | 4 cut(s) | 62, 77, 1067, 1205 |
| GlaI | GCGC | 1 cut(s) | 417 |
| GluI | GCNGC | 1 cut(s) | 164 |
| GsuI | CTGGAG | 2 cut(s) | 219, 340 |
| HaeIII | GGCC | 1 cut(s) | 918 |
| HhaI | GCGC | 1 cut(s) | 418 |
| Hin1II | CATG | 4 cut(s) | 595, 624, 1003, 1286 |
| Hin6I | GCGC | 1 cut(s) | 416 |
| HinP1I | GCGC | 1 cut(s) | 416 |
| HincII | GTYRAC | 1 cut(s) | 940 |
| HindII | GTYRAC | 1 cut(s) | 940 |
| HindIII | AAGCTT | 1 cut(s) | 1330 |
| HinfI | GANTC | 7 cut(s) | 12, 19, 144, 285, 354, 598, 1175 |
| HphI | GGTGA | 4 cut(s) | 251, 302, 832, 914 |
| Hpy166II | GTNNAC | 2 cut(s) | 628, 940 |
| Hpy188I | TCNGA | 4 cut(s) | 219, 290, 404, 1269 |
| Hpy8I | GTNNAC | 2 cut(s) | 628, 940 |
| HpyAV | CCTTC | 2 cut(s) | 805, 1189 |
| HpyCH4III | ACNGT | 1 cut(s) | 1277 |
| HpyCH4IV | ACGT | 4 cut(s) | 388, 533, 750, 826 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 303, 485, 569, 640, 830, 836, 1073 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 228 |
| HpySE526I | ACGT | 4 cut(s) | 388, 533, 750, 826 |
| Hsp92II | CATG | 4 cut(s) | 595, 624, 1003, 1286 |
| HspAI | GCGC | 1 cut(s) | 416 |
| Ksp22I | TGATCA | 1 cut(s) | 391 |
| LmnI | GCTCC | 2 cut(s) | 219, 1119 |
| LweI | GCATC | 1 cut(s) | 290 |
| MaeI | CTAG | 4 cut(s) | 62, 77, 1067, 1205 |
| MaeII | ACGT | 4 cut(s) | 388, 533, 750, 826 |
| MaeIII | GTNAC | 3 cut(s) | 101, 257, 308 |
| MboII | GAAGA | 9 cut(s) | 56, 163, 224, 303, 343, 419, 658, 957, 1087 |
| MlyI | GAGTC | 1 cut(s) | 21 |
| MmeI | TCCRAC | 1 cut(s) | 92 |
| MnlI | CCTC | 5 cut(s) | 134, 235, 321, 668, 981 |
| Mph1103I | ATGCAT | 1 cut(s) | 487 |
| MslI | CAYNNNNRTG | 3 cut(s) | 651, 998, 1107 |
| MspR9I | CCNGG | 2 cut(s) | 237, 1144 |
| MvaI | CCWGG | 2 cut(s) | 237, 1144 |
| MvnI | CGCG | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 228 |
| NlaIII | CATG | 4 cut(s) | 595, 624, 1003, 1286 |
| NlaIV | GGNNCC | 3 cut(s) | 167, 789, 1121 |
| NmuCI | GTSAC | 1 cut(s) | 308 |
| NruI | TCGCGA | 1 cut(s) | 17 |
| NsiI | ATGCAT | 1 cut(s) | 487 |
| NspI | RCATGY | 1 cut(s) | 1003 |
| NspV | TTCGAA | 1 cut(s) | 929 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1273 |
| PfeI | GAWTC | 6 cut(s) | 19, 144, 285, 354, 598, 1175 |
| PkrI | GCNGC | 1 cut(s) | 165 |
| Ple19I | CGATCG | 1 cut(s) | 402 |
| PleI | GAGTC | 1 cut(s) | 20 |
| PpsI | GAGTC | 1 cut(s) | 20 |
| Ppu21I | YACGTR | 1 cut(s) | 534 |
| PshBI | ATTAAT | 1 cut(s) | 57 |
| Psp6I | CCWGG | 2 cut(s) | 235, 1142 |
| PspGI | CCWGG | 2 cut(s) | 235, 1142 |
| PspN4I | GGNNCC | 3 cut(s) | 167, 789, 1121 |
| PstI | CTGCAG | 1 cut(s) | 838 |
| PvuI | CGATCG | 1 cut(s) | 402 |
| RruI | TCGCGA | 1 cut(s) | 17 |
| RsaI | GTAC | 1 cut(s) | 953 |
| RsaNI | GTAC | 1 cut(s) | 952 |
| RseI | CAYNNNNRTG | 3 cut(s) | 651, 998, 1107 |
| SatI | GCNGC | 1 cut(s) | 164 |
| SchI | GAGTC | 1 cut(s) | 21 |
| ScrFI | CCNGG | 2 cut(s) | 237, 1144 |
| SfaNI | GCATC | 1 cut(s) | 290 |
| SfcI | CTRYAG | 1 cut(s) | 834 |
| SfuI | TTCGAA | 1 cut(s) | 929 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 651, 998, 1107 |
| SsiI | CCGC | 1 cut(s) | 163 |
| SspI | AATATT | 2 cut(s) | 496, 861 |
| SspMI | CTAG | 4 cut(s) | 62, 77, 1067, 1205 |
| StyD4I | CCNGG | 2 cut(s) | 235, 1142 |
| StyI | CCWWGG | 2 cut(s) | 757, 791 |
| TaaI | ACNGT | 1 cut(s) | 1277 |
| TaiI | ACGT | 4 cut(s) | 391, 536, 753, 829 |
| TaqI | TCGA | 5 cut(s) | 42, 83, 283, 398, 929 |
| TauI | GCSGC | 1 cut(s) | 166 |
| TfiI | GAWTC | 6 cut(s) | 19, 144, 285, 354, 598, 1175 |
| TseFI | GTSAC | 1 cut(s) | 308 |
| Tsp45I | GTSAC | 1 cut(s) | 308 |
| TspDTI | ATGAA | 8 cut(s) | 426, 580, 609, 729, 1026, 1087, 1091, 1358 |
| TspGWI | ACGGA | 5 cut(s) | 169, 224, 310, 925, 959 |
| VspI | ATTAAT | 1 cut(s) | 57 |
| XapI | RAATTY | 5 cut(s) | 279, 1075, 1136, 1228, 1356 |
| XbaI | TCTAGA | 1 cut(s) | 61 |
| XceI | RCATGY | 1 cut(s) | 1003 |
| XspI | CTAG | 4 cut(s) | 62, 77, 1067, 1205 |
| Zsp2I | ATGCAT | 1 cut(s) | 487 |