MD01G1116200.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000846
Physical Location & Seq
Reverse (-)
22992443 .. 22993138
696 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1116200.v1.1.491

Sequence Viewer

Length: 147 bp
ATGTCTCTCATTTGGGTACTGATAAGATACGGAAAATTTTCAAATGCTACCCTGCTGCTGGACTTTGGGTTTACACTTTCATACAACATTCACAACCAGGTCCAGATCCAGGGCGATATACCTCATCATGATGTCCTTCATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

49

Amino Acids

5.6

Weight (kDa)

5.99

Isoelectric Point (pI)

23.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 2 cut(s) 58, 109
AgsI TTSAA 1 cut(s) 42
AjnI CCWGG 2 cut(s) 96, 108
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 100
AvaII GGWCC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 98, 110
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 2 cut(s) 98, 110
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 98, 110
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 109
BseBI CCWGG 2 cut(s) 98, 110
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 58, 109
BseXI GCAGC 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 58, 109
BsmAI GTCTC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 105
BspHI TCATGA 2 cut(s) 127, 139
BspPI GGATC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 98, 110
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 105
BstNI CCWGG 2 cut(s) 98, 110
BstSCI CCNGG 2 cut(s) 96, 108
BstV1I GCAGC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
CciI TCATGA 2 cut(s) 127, 139
Cfr13I GGNCC 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 128, 140
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 96, 108
FaeI CATG 2 cut(s) 131, 143
FaiI YATR 4 cut(s) 82, 119, 129, 141
FatI CATG 2 cut(s) 127, 139
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 56
Hin1II CATG 2 cut(s) 131, 143
Hpy166II GTNNAC 1 cut(s) 72
Hpy188III TCNNGA 3 cut(s) 103, 128, 140
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 146
Hsp92II CATG 2 cut(s) 131, 143
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 7 cut(s) 44, 65, 83, 95, 110, 116, 122
Lsp1109I GCAGC 1 cut(s) 42
MabI ACCWGGT 1 cut(s) 96
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MflI RGATCY 1 cut(s) 105
MluCI AATT 1 cut(s) 35
MnlI CCTC 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 37
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 98, 110
MvaI CCWGG 2 cut(s) 98, 110
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 131, 143
PagI TCATGA 2 cut(s) 127, 139
PdmI GAANNNNTTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 96, 108
PspGI CCWGG 2 cut(s) 96, 108
PspPI GGNCC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 129
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 98, 110
SetI ASST 2 cut(s) 102, 124
SexAI ACCWGGT 1 cut(s) 96
SgeI CNNG 8 cut(s) 64, 71, 109, 110, 115, 121, 122, 140
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 96, 108
TasI AATT 1 cut(s) 35
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 69, 128
TspGWI ACGGA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.