Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Reverse (-)

22998571 .. 23004734

Gene Structure 6164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1116500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGCTACTGGGAGCGCGAAAAATCCGATGGCGTCTCCGCCGTCAACATCTCAGCCTCTCCTACACTCCAAGTATCAAGCTGAACTTCCACTCCTTGTCCCAACCCAAGGTCGAATCCGACGACTTCTTGCCGTGGCTGGAGCGGAAGGCCGGCGCCGAGATTTCGTCGGCACTTTCAATTGGGAAATCGGCGTACGGAACTTCTCTTTTTGCTTCAAAGAGCATAACAGCTGGAGATTGCGTTTTGAAGGTTCCGTACAGAGTGCAACTAGCTCCGGATGATCTCGTTCCGGAACTGAAAGATTTGTTGAGTGATGGAGTTGGCGATGCTGCAAAGCTTGCCACTGTCGTTTTGTTTGAGCAGAGAATGGGCAATGATTCCAGGTGGGCCCCTTACATTCGCTGGCTTCCTCGCCCGGAGGAGATGCATTGCACGATATTTTGGAGTGACGATGAGCTGGAGCTGATTCGCCAAAGCTCTGTATATCAGGAAACAATTAATCAAAGATCTCAAATCAAAAAGGAATTTTTGGCAATTAGGACGGCTTTCAAGAACTTCCCTGAAATGTCCAAAAGTATCACCTATAAGGATTTCATGCACGCATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCATGAAGGGTTATTCCCTGATCCCATTTGCTGATTTTTTGAATCATGACGGCACTTCAGAATCATTAGTGTTGAGTGACAACGACAAACATTTCTCAGAGGTCATTGCTGACCGCAATTATGCTCCTGATGAACAGGTACTGATAAGATACGGAAAATTTTCAAATGCTACCCTGCTTCTTGACTTTGGGTTTACACTTTCATCCAACATCCACGACCAGGTCGAGATCCAGGTCAATATACCTCACCATGACGTCCTTCGTGAAATGAAGTGGGAACTTTTGAAGAGACATCACAGACCAATCAGTAATGATGTCAATGGTTTCGACTCTTCAATGGATTCTTTCACTATCAAGGAAGTTAGGTCTGGTAGTGGAAAAGGGAAAGGAATTCCTCAGTCACTTCGTGCTTTTGCTCGTGTTCTATGTTGCGCCTCTCCTCAAGAACTTAGTGACCTGGCCAAGGAAGCTGCAGAACATGATGGTCGATTGGCTCGACGTCCTTTAATAAACAGCAGCAGAGAGATTGAAGCACATCAGATGTTGTTATCAAAATTAACCCAATTAGCTGACGTTGTGATGCATCTATCAAGTTCTCCAGTTACTTGTGAAAGACTTTCTATCCGGAGGCAAATGGCTCAGGATCTCCTCAATGGTGAACTTCGTATCCTCAAATCTGCTTCTGCATGGCTAAGAAACTACTGCGACACTTTGACTACAACAGACTGCTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

457

Amino Acids

51.8

Weight (kDa)

8.08

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rubis-subs-bind	PF09273	295 - 435	4.3e-06	Rubisco LSMT substrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	891, 1135
AccB1I	GGYRCC	1 cut(s)	152
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	1 cut(s)	16
AccIII	TCCGGA	3 cut(s)	274, 289, 1257
AciI	CCGC	3 cut(s)	37, 142, 748
AclWI	GGATC	3 cut(s)	649, 856, 1284
AcoI	YGGCCR	1 cut(s)	1092
AcsI	RAATTY	3 cut(s)	524, 791, 1023
AcuI	CTGAAG	1 cut(s)	675
AcyI	GRCGYC	4 cut(s)	31, 153, 888, 1132
AdeI	CACNNNGTG	1 cut(s)	1040
AfaI	GTAC	3 cut(s)	194, 257, 774
AfiI	CCNNNNNNNGG	3 cut(s)	106, 853, 1096
AgsI	TTSAA	9 cut(s)	177, 216, 247, 550, 676, 798, 919, 969, 1163
AjnI	CCWGG	4 cut(s)	380, 852, 864, 1089
AloI	GAACNNNNNNTCC	4 cut(s)	74, 106, 1284, 1316
AluBI	AGCT	9 cut(s)	79, 230, 272, 337, 457, 463, 477, 1103, 1202
AluI	AGCT	9 cut(s)	79, 230, 272, 337, 457, 463, 477, 1103, 1202
Alw26I	GTCTC	2 cut(s)	38, 916
AlwI	GGATC	3 cut(s)	649, 856, 1284
AlwNI	CAGNNNCTG	1 cut(s)	775
Ama87I	CYCGRG	1 cut(s)	621
Aor13HI	TCCGGA	3 cut(s)	274, 289, 1257
AoxI	GGCC	3 cut(s)	147, 387, 1092
ApaI	GGGCCC	1 cut(s)	391
ApeKI	GCWGC	3 cut(s)	329, 1103, 1149
ApoI	RAATTY	3 cut(s)	524, 791, 1023
AseI	ATTAAT	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	793
AspLEI	GCGC	3 cut(s)	16, 155, 1067
AspS9I	GGNCC	2 cut(s)	387, 388
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	571, 872, 1301
AvaI	CYCGRG	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	1094
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	391
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
BauI	CACGAG	1 cut(s)	1050
BbvI	GCAGC	3 cut(s)	316, 1090, 1161
BccI	CCATC	3 cut(s)	21, 308, 1109
BceAI	ACGGC	4 cut(s)	24, 115, 558, 700
BciT130I	CCWGG	4 cut(s)	382, 854, 866, 1091
BciVI	GTATCC	1 cut(s)	1310
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	38, 916
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	2 cut(s)	1104, 1363
BfoI	RGCGCY	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	1310
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	3 cut(s)	330, 1104, 1150
BlsI	GCNGC	3 cut(s)	331, 1105, 1151
Bme1390I	CCNGG	5 cut(s)	382, 416, 854, 866, 1091
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	2 cut(s)	387, 388
BmiI	GGNNCC	4 cut(s)	154, 252, 389, 390
BmrFI	CCNGG	5 cut(s)	382, 416, 854, 866, 1091
BmrI	ACTGGG	1 cut(s)	17
BmsI	GCATC	4 cut(s)	316, 414, 1203, 1225
BmuI	ACTGGG	1 cut(s)	17
BpmI	CTGGAG	4 cut(s)	158, 252, 479, 1215
Bpu10I	CCTNAGC	1 cut(s)	1272
BpuEI	CTTGAG	1 cut(s)	1059
BpuMI	CCSGG	1 cut(s)	416
BsaHI	GRCGYC	4 cut(s)	31, 153, 888, 1132
BsaJI	CCNNGG	3 cut(s)	105, 131, 1095
BsaWI	WCCGGW	3 cut(s)	274, 289, 1257
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 225, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 853, 1096
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	12, 1232
Bse3DI	GCAATG	3 cut(s)	379, 427, 738
BseAI	TCCGGA	3 cut(s)	274, 289, 1257
BseBI	CCWGG	4 cut(s)	382, 854, 866, 1091
BseDI	CCNNGG	3 cut(s)	105, 131, 1095
BseGI	GGATG	3 cut(s)	283, 836, 843
BseLI	CCNNNNNNNGG	3 cut(s)	106, 853, 1096
BseMI	GCAATG	3 cut(s)	379, 427, 738
BseMII	CTCAG	4 cut(s)	64, 744, 1043, 1286
BseNI	ACTGG	2 cut(s)	12, 1232
BseRI	GAGGAG	3 cut(s)	434, 1062, 1271
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	3 cut(s)	316, 1090, 1161
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	3 cut(s)	149, 389, 1094
BshNI	GGYRCC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	5 cut(s)	150, 275, 290, 416, 1258
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	106, 853, 1096
BsmAI	GTCTC	2 cut(s)	38, 916
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	149, 389, 1094
BsoBI	CYCGRG	1 cut(s)	621
Bsp120I	GGGCCC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp13I	TCCGGA	3 cut(s)	274, 289, 1257
Bsp143I	GATC	5 cut(s)	280, 506, 654, 861, 1276
BspACI	CCGC	3 cut(s)	37, 142, 748
BspANI	GGCC	3 cut(s)	149, 389, 1094
BspCNI	CTCAG	4 cut(s)	63, 743, 1042, 1285
BspEI	TCCGGA	3 cut(s)	274, 289, 1257
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	4 cut(s)	154, 252, 389, 390
BspMAI	CTGCAG	1 cut(s)	1108
BspPI	GGATC	3 cut(s)	649, 856, 1284
BspT107I	GGYRCC	1 cut(s)	152
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	3 cut(s)	379, 427, 738
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	12, 1232
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	105, 131, 1095
BssMI	GATC	5 cut(s)	280, 506, 654, 861, 1276
BssNI	GRCGYC	4 cut(s)	31, 153, 888, 1132
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	2 cut(s)	105, 1095
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	4 cut(s)	382, 854, 866, 1091
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	914, 970
BstACI	GRCGYC	4 cut(s)	31, 153, 888, 1132
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	4 cut(s)	151, 339, 404, 600
BstDEI	CTNAG	6 cut(s)	50, 730, 1029, 1082, 1272, 1325
BstDSI	CCRYGG	1 cut(s)	131
BstENI	CCTNNNNNAGG	1 cut(s)	1094
BstF5I	GGATG	3 cut(s)	283, 836, 843
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	3 cut(s)	16, 155, 1067
BstKTI	GATC	5 cut(s)	283, 509, 657, 864, 1279
BstMAI	GTCTC	2 cut(s)	38, 916
BstMBI	GATC	5 cut(s)	280, 506, 654, 861, 1276
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 1100
BstNI	CCWGG	4 cut(s)	382, 854, 866, 1091
BstSCI	CCNGG	5 cut(s)	380, 414, 852, 864, 1089
BstSFI	CTRYAG	2 cut(s)	1104, 1363
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	3 cut(s)	316, 1090, 1161
BstX2I	RGATCY	3 cut(s)	506, 861, 1276
BstYI	RGATCY	3 cut(s)	506, 861, 1276
BsuI	GTATCC	1 cut(s)	1310
BsuRI	GGCC	3 cut(s)	149, 389, 1094
BtgI	CCRYGG	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	3 cut(s)	283, 836, 843
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	4 cut(s)	151, 339, 404, 600
CaiI	CAGNNNCTG	1 cut(s)	775
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	3 cut(s)	16, 155, 1067
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	387, 388
CseI	GACGC	1 cut(s)	20
CsiI	ACCWGGT	1 cut(s)	852
Csp6I	GTAC	3 cut(s)	193, 256, 773
CviAII	CATG	7 cut(s)	595, 627, 637, 680, 884, 1112, 1320
CviQI	GTAC	3 cut(s)	193, 256, 773
DdeI	CTNAG	6 cut(s)	50, 730, 1029, 1082, 1272, 1325
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	5 cut(s)	282, 508, 656, 863, 1278
DpnII	GATC	5 cut(s)	280, 506, 654, 861, 1276
DraIII	CACNNNGTG	1 cut(s)	1040
EaeI	YGGCCR	1 cut(s)	1092
Eam1104I	CTCTTC	2 cut(s)	914, 970
EarI	CTCTTC	2 cut(s)	914, 970
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	105, 1095
Eco24I	GRGCYC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	621
EcoNI	CCTNNNNNAGG	1 cut(s)	1094
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	1023
EcoRII	CCWGG	4 cut(s)	380, 852, 864, 1089
EcoT14I	CCWWGG	2 cut(s)	105, 1095
EcoT22I	ATGCAT	2 cut(s)	429, 1218
EcoT38I	GRGCYC	1 cut(s)	391
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	105, 1095
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	7 cut(s)	598, 630, 640, 683, 887, 1115, 1323
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	7 cut(s)	594, 626, 636, 679, 883, 1111, 1319
FauNDI	CATATG	1 cut(s)	604
Fnu4HI	GCNGC	3 cut(s)	330, 1104, 1150
FokI	GGATG	3 cut(s)	290, 823, 830
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	330, 1104, 1150
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	3 cut(s)	15, 154, 1066
GluI	GCNGC	3 cut(s)	330, 1104, 1150
GsuI	CTGGAG	4 cut(s)	158, 252, 479, 1215
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	149, 389, 1094
HapII	CCGG	5 cut(s)	150, 275, 290, 416, 1258
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	3 cut(s)	16, 155, 1067
Hin1I	GRCGYC	4 cut(s)	31, 153, 888, 1132
Hin1II	CATG	7 cut(s)	598, 630, 640, 683, 887, 1115, 1323
Hin6I	GCGC	3 cut(s)	14, 153, 1065
HinP1I	GCGC	3 cut(s)	14, 153, 1065
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	7 cut(s)	113, 377, 466, 676, 695, 962, 974
HpaII	CCGG	5 cut(s)	150, 275, 290, 416, 1258
HphI	GGTGA	3 cut(s)	571, 872, 1301
Hpy166II	GTNNAC	3 cut(s)	44, 828, 1292
Hpy188I	TCNGA	5 cut(s)	26, 118, 694, 733, 1173
Hpy8I	GTNNAC	3 cut(s)	44, 828, 1292
Hpy99I	CGWCG	3 cut(s)	122, 169, 1134
HpyAV	CCTTC	4 cut(s)	139, 241, 634, 902
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	3 cut(s)	888, 1132, 1206
HpyCH4V	TGCA	8 cut(s)	265, 332, 427, 432, 598, 1106, 1216, 1319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 1100
HpyF3I	CTNAG	6 cut(s)	50, 730, 1029, 1082, 1272, 1325
HpySE526I	ACGT	3 cut(s)	888, 1132, 1206
Hsp92I	GRCGYC	4 cut(s)	31, 153, 888, 1132
Hsp92II	CATG	7 cut(s)	598, 630, 640, 683, 887, 1115, 1323
HspAI	GCGC	3 cut(s)	14, 153, 1065
KasI	GGCGCC	1 cut(s)	152
Kpn2I	TCCGGA	3 cut(s)	274, 289, 1257
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	280, 506, 654, 861, 1276
LmnI	GCTCC	5 cut(s)	11, 139, 277, 460, 763
Lsp1109I	GCAGC	3 cut(s)	316, 1090, 1161
LweI	GCATC	4 cut(s)	316, 414, 1203, 1225
MabI	ACCWGGT	1 cut(s)	852
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	3 cut(s)	888, 1132, 1206
MaeIII	GTNAC	6 cut(s)	446, 613, 710, 1032, 1085, 1234
MalI	GATC	5 cut(s)	282, 508, 656, 863, 1278
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	5 cut(s)	280, 506, 654, 861, 1276
MboII	GAAGA	2 cut(s)	931, 957
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	3 cut(s)	506, 861, 1276
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	1094
MluCI	AATT	9 cut(s)	177, 495, 524, 534, 751, 791, 1023, 1187, 1196
MluNI	TGGCCA	1 cut(s)	1094
Mly113I	GGCGCC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	956
MmeI	TCCRAC	2 cut(s)	141, 864
Mox20I	TGGCCA	1 cut(s)	1094
Mph1103I	ATGCAT	2 cut(s)	429, 1218
MroI	TCCGGA	3 cut(s)	274, 289, 1257
MroNI	GCCGGC	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	793
MscI	TGGCCA	1 cut(s)	1094
MseI	TTAA	3 cut(s)	498, 1139, 1190
MslI	CAYNNNNRTG	1 cut(s)	603
Msp20I	TGGCCA	1 cut(s)	1094
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	5 cut(s)	150, 275, 290, 416, 1258
MspR9I	CCNGG	5 cut(s)	382, 416, 854, 866, 1091
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	4 cut(s)	382, 854, 866, 1091
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	338, 1100
NaeI	GCCGGC	1 cut(s)	151
NarI	GGCGCC	1 cut(s)	153
NciI	CCSGG	1 cut(s)	416
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	5 cut(s)	280, 506, 654, 861, 1276
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	7 cut(s)	598, 630, 640, 683, 887, 1115, 1323
NlaIV	GGNNCC	4 cut(s)	154, 252, 389, 390
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	4 cut(s)	446, 710, 1032, 1085
NsiI	ATGCAT	2 cut(s)	429, 1218
PaeR7I	CTCGAG	1 cut(s)	621
PagI	TCATGA	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 855, 1126
PdiI	GCCGGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	793
PfeI	GAWTC	6 cut(s)	113, 377, 466, 676, 695, 974
Pfl23II	CGTACG	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	854
PkrI	GCNGC	3 cut(s)	331, 1105, 1151
PleI	GAGTC	1 cut(s)	956
PluTI	GGCGCC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	956
PshBI	ATTAAT	1 cut(s)	498
Psp6I	CCWGG	4 cut(s)	380, 852, 864, 1089
PspGI	CCWGG	4 cut(s)	380, 852, 864, 1089
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	154, 252, 389, 390
PspOMI	GGGCCC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	387, 388
PstI	CTGCAG	1 cut(s)	1108
PstNI	CAGNNNCTG	1 cut(s)	775
PsuI	RGATCY	3 cut(s)	506, 861, 1276
PsyI	GACNNNGTC	1 cut(s)	854
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	3 cut(s)	194, 257, 774
RsaNI	GTAC	3 cut(s)	193, 256, 773
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	3 cut(s)	498, 1139, 1190
SatI	GCNGC	3 cut(s)	330, 1104, 1150
Sau3AI	GATC	5 cut(s)	280, 506, 654, 861, 1276
Sau96I	GGNCC	2 cut(s)	387, 388
SchI	GAGTC	1 cut(s)	956
ScrFI	CCNGG	5 cut(s)	382, 416, 854, 866, 1091
SduI	GDGCHC	1 cut(s)	391
SexAI	ACCWGGT	1 cut(s)	852
SfaNI	GCATC	4 cut(s)	316, 414, 1203, 1225
SfcI	CTRYAG	2 cut(s)	1104, 1363
SfoI	GGCGCC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	621
SlaI	CTCGAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	621, 1074
SmoI	CTYRAG	2 cut(s)	621, 1074
Sse9I	AATT	9 cut(s)	177, 495, 524, 534, 751, 791, 1023, 1187, 1196
SsiI	CCGC	3 cut(s)	37, 142, 748
SspDI	GGCGCC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	5 cut(s)	380, 414, 852, 864, 1089
StyI	CCWWGG	2 cut(s)	105, 1095
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	3 cut(s)	891, 1135, 1209
TaqI	TCGA	6 cut(s)	111, 622, 858, 960, 1120, 1129
TasI	AATT	9 cut(s)	177, 495, 524, 534, 751, 791, 1023, 1187, 1196
TfiI	GAWTC	6 cut(s)	113, 377, 466, 676, 695, 974
Tru1I	TTAA	3 cut(s)	498, 1139, 1190
Tru9I	TTAA	3 cut(s)	498, 1139, 1190
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	4 cut(s)	446, 710, 1032, 1085
TseI	GCWGC	3 cut(s)	329, 1103, 1149
Tsp45I	GTSAC	4 cut(s)	446, 710, 1032, 1085
TspDTI	ATGAA	5 cut(s)	583, 653, 780, 825, 917
TspGWI	ACGGA	3 cut(s)	210, 243, 801
TspRI	CASTG	1 cut(s)	349
Tth111I	GACNNNGTC	1 cut(s)	854
VspI	ATTAAT	1 cut(s)	498
XagI	CCTNNNNNAGG	1 cut(s)	1094
XapI	RAATTY	3 cut(s)	524, 791, 1023
XhoI	CTCGAG	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	793
XspI	CTAG	1 cut(s)	269
ZraI	GACGTC	2 cut(s)	889, 1133
Zsp2I	ATGCAT	2 cut(s)	429, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.