isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1136 |
| AccB1I | GGYRCC | 1 cut(s) | 1136 |
| AccBSI | CCGCTC | 1 cut(s) | 1646 |
| AccII | CGCG | 2 cut(s) | 232, 1149 |
| AclWI | GGATC | 4 cut(s) | 221, 247, 874, 1589 |
| AcoI | YGGCCR | 1 cut(s) | 1013 |
| AfaI | GTAC | 2 cut(s) | 1138, 1265 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 236, 1497, 1588 |
| AflIII | ACRYGT | 3 cut(s) | 417, 1024, 1147 |
| AgsI | TTSAA | 9 cut(s) | 62, 113, 294, 671, 932, 1114, 1274, 1347, 1557 |
| AjiI | CACGTC | 2 cut(s) | 280, 1223 |
| AjnI | CCWGG | 2 cut(s) | 800, 1575 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 358, 390, 918, 950 |
| AluBI | AGCT | 5 cut(s) | 695, 944, 1040, 1471, 1651 |
| AluI | AGCT | 5 cut(s) | 695, 944, 1040, 1471, 1651 |
| Alw21I | GWGCWC | 3 cut(s) | 205, 397, 1356 |
| Alw26I | GTCTC | 3 cut(s) | 733, 1338, 1392 |
| AlwI | GGATC | 4 cut(s) | 221, 247, 874, 1589 |
| AoxI | GGCC | 2 cut(s) | 1013, 1579 |
| ApeKI | GCWGC | 2 cut(s) | 695, 1037 |
| AseI | ATTAAT | 1 cut(s) | 465 |
| Asp718I | GGTACC | 1 cut(s) | 1136 |
| AspLEI | GCGC | 1 cut(s) | 336 |
| AspS9I | GGNCC | 3 cut(s) | 320, 1207, 1579 |
| AsuC2I | CCSGG | 1 cut(s) | 1017 |
| AsuHPI | GGTGA | 6 cut(s) | 26, 287, 596, 765, 816, 1625 |
| AvaII | GGWCC | 2 cut(s) | 320, 1207 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1120, 1153 |
| BanI | GGYRCC | 1 cut(s) | 1136 |
| BbsI | GAAGAC | 2 cut(s) | 821, 1121 |
| Bbv12I | GWGCWC | 3 cut(s) | 205, 397, 1356 |
| BbvCI | CCTCAGC | 1 cut(s) | 1106 |
| BbvI | GCAGC | 2 cut(s) | 682, 1049 |
| BccI | CCATC | 8 cut(s) | 157, 256, 491, 712, 784, 1046, 1095, 1440 |
| BciT130I | CCWGG | 2 cut(s) | 802, 1577 |
| BciVI | GTATCC | 1 cut(s) | 1512 |
| BcnI | CCSGG | 1 cut(s) | 1017 |
| BcoDI | GTCTC | 3 cut(s) | 733, 1338, 1392 |
| BfaI | CTAG | 5 cut(s) | 206, 578, 683, 1727, 1746 |
| BfmI | CTRYAG | 3 cut(s) | 435, 723, 1305 |
| BfuI | GTATCC | 1 cut(s) | 1512 |
| BglII | AGATCT | 1 cut(s) | 919 |
| BisI | GCNGC | 6 cut(s) | 233, 357, 696, 856, 1038, 1057 |
| BlsI | GCNGC | 6 cut(s) | 234, 358, 697, 857, 1039, 1058 |
| Bme1390I | CCNGG | 3 cut(s) | 802, 1017, 1577 |
| Bme18I | GGWCC | 2 cut(s) | 320, 1207 |
| BmgBI | CACGTC | 2 cut(s) | 280, 1223 |
| BmgT120I | GGNCC | 3 cut(s) | 320, 1207, 1579 |
| BmiI | GGNNCC | 3 cut(s) | 321, 1138, 1208 |
| BmrFI | CCNGG | 3 cut(s) | 802, 1017, 1577 |
| BmsI | GCATC | 1 cut(s) | 1473 |
| BpiI | GAAGAC | 2 cut(s) | 821, 1121 |
| BpmI | CTGGAG | 1 cut(s) | 1662 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1106 |
| BpuMI | CCSGG | 1 cut(s) | 1017 |
| BsaAI | YACGTR | 1 cut(s) | 420 |
| BsaBI | GATNNNNATC | 1 cut(s) | 847 |
| BsaJI | CCNNGG | 4 cut(s) | 230, 800, 1016, 1576 |
| BsaWI | WCCGGW | 1 cut(s) | 1620 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 41, 71, 641, 671, 1466, 1496 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 236, 1497, 1588 |
| Bse8I | GATNNNNATC | 1 cut(s) | 847 |
| BseBI | CCWGG | 2 cut(s) | 802, 1577 |
| BseDI | CCNNGG | 4 cut(s) | 230, 800, 1016, 1576 |
| BseGI | GGATG | 3 cut(s) | 267, 704, 1106 |
| BseJI | GATNNNNATC | 1 cut(s) | 847 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 236, 1497, 1588 |
| BseMII | CTCAG | 5 cut(s) | 824, 863, 1097, 1456, 1771 |
| BseRI | GAGGAG | 1 cut(s) | 1361 |
| BseXI | GCAGC | 2 cut(s) | 682, 1049 |
| Bsh1236I | CGCG | 2 cut(s) | 232, 1149 |
| BshFI | GGCC | 2 cut(s) | 1015, 1581 |
| BshNI | GGYRCC | 1 cut(s) | 1136 |
| BsiHKAI | GWGCWC | 3 cut(s) | 205, 397, 1356 |
| BsiSI | CCGG | 4 cut(s) | 645, 1016, 1582, 1621 |
| BslFI | GGGAC | 4 cut(s) | 236, 333, 1087, 1701 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 236, 1497, 1588 |
| BsmAI | GTCTC | 3 cut(s) | 733, 1338, 1392 |
| BsmBI | CGTCTC | 1 cut(s) | 1392 |
| BsmFI | GGGAC | 4 cut(s) | 236, 333, 1087, 1701 |
| BsmI | GAATGC | 1 cut(s) | 1410 |
| BsnI | GGCC | 2 cut(s) | 1015, 1581 |
| Bsp1286I | GDGCHC | 3 cut(s) | 205, 397, 1356 |
| Bsp143I | GATC | 7 cut(s) | 226, 239, 256, 866, 919, 1301, 1594 |
| BspANI | GGCC | 2 cut(s) | 1015, 1581 |
| BspCNI | CTCAG | 5 cut(s) | 823, 864, 1098, 1455, 1770 |
| BspFNI | CGCG | 2 cut(s) | 232, 1149 |
| BspLI | GGNNCC | 3 cut(s) | 321, 1138, 1208 |
| BspPI | GGATC | 4 cut(s) | 221, 247, 874, 1589 |
| BspQI | GCTCTTC | 1 cut(s) | 1127 |
| BspT107I | GGYRCC | 1 cut(s) | 1136 |
| BsrBI | CCGCTC | 1 cut(s) | 1646 |
| BssECI | CCNNGG | 4 cut(s) | 230, 800, 1016, 1576 |
| BssMI | GATC | 7 cut(s) | 226, 239, 256, 866, 919, 1301, 1594 |
| Bst2UI | CCWGG | 2 cut(s) | 802, 1577 |
| Bst6I | CTCTTC | 2 cut(s) | 615, 1127 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 331 |
| BstBAI | YACGTR | 1 cut(s) | 420 |
| BstC8I | GCNNGC | 1 cut(s) | 744 |
| BstDEI | CTNAG | 6 cut(s) | 810, 872, 1106, 1442, 1612, 1757 |
| BstDSI | CCRYGG | 1 cut(s) | 230 |
| BstF5I | GGATG | 3 cut(s) | 267, 704, 1106 |
| BstFNI | CGCG | 2 cut(s) | 232, 1149 |
| BstHHI | GCGC | 1 cut(s) | 336 |
| BstKTI | GATC | 7 cut(s) | 229, 242, 259, 869, 922, 1304, 1597 |
| BstMAI | GTCTC | 3 cut(s) | 733, 1338, 1392 |
| BstMBI | GATC | 7 cut(s) | 226, 239, 256, 866, 919, 1301, 1594 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 331, 578, 962 |
| BstNI | CCWGG | 2 cut(s) | 802, 1577 |
| BstSCI | CCNGG | 3 cut(s) | 800, 1015, 1575 |
| BstSFI | CTRYAG | 3 cut(s) | 435, 723, 1305 |
| BstUI | CGCG | 2 cut(s) | 232, 1149 |
| BstV1I | GCAGC | 2 cut(s) | 682, 1049 |
| BstV2I | GAAGAC | 2 cut(s) | 821, 1121 |
| BstX2I | RGATCY | 1 cut(s) | 919 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 163 |
| BstYI | RGATCY | 1 cut(s) | 919 |
| BsuI | GTATCC | 1 cut(s) | 1512 |
| BsuRI | GGCC | 2 cut(s) | 1015, 1581 |
| BtgI | CCRYGG | 1 cut(s) | 230 |
| BtrI | CACGTC | 2 cut(s) | 280, 1223 |
| BtsCI | GGATG | 3 cut(s) | 267, 704, 1106 |
| BtsI | GCAGTG | 1 cut(s) | 737 |
| BtsIMutI | CAGTG | 3 cut(s) | 252, 737, 869 |
| Cac8I | GCNNGC | 1 cut(s) | 744 |
| CfoI | GCGC | 1 cut(s) | 336 |
| Cfr13I | GGNCC | 3 cut(s) | 320, 1207, 1579 |
| Cfr42I | CCGCGG | 1 cut(s) | 233 |
| CseI | GACGC | 4 cut(s) | 293, 819, 1126, 1138 |
| Csp6I | GTAC | 2 cut(s) | 1137, 1264 |
| CviAII | CATG | 5 cut(s) | 82, 952, 962, 1279, 1626 |
| CviQI | GTAC | 2 cut(s) | 1137, 1264 |
| DdeI | CTNAG | 6 cut(s) | 810, 872, 1106, 1442, 1612, 1757 |
| DpnI | GATC | 7 cut(s) | 228, 241, 258, 868, 921, 1303, 1596 |
| DpnII | GATC | 7 cut(s) | 226, 239, 256, 866, 919, 1301, 1594 |
| DraI | TTTAAA | 1 cut(s) | 1182 |
| EaeI | YGGCCR | 1 cut(s) | 1013 |
| Eam1104I | CTCTTC | 2 cut(s) | 615, 1127 |
| EarI | CTCTTC | 2 cut(s) | 615, 1127 |
| EciI | GGCGGA | 1 cut(s) | 1074 |
| Eco32I | GATATC | 1 cut(s) | 1751 |
| Eco47I | GGWCC | 2 cut(s) | 320, 1207 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1207 |
| EcoRI | GAATTC | 2 cut(s) | 769, 1782 |
| EcoRII | CCWGG | 2 cut(s) | 800, 1575 |
| EcoRV | GATATC | 1 cut(s) | 1751 |
| EcoT22I | ATGCAT | 1 cut(s) | 33 |
| Esp3I | CGTCTC | 1 cut(s) | 1392 |
| FaeI | CATG | 5 cut(s) | 85, 955, 965, 1282, 1629 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 286, 318, 1106, 1138, 1460, 1492 |
| FaqI | GGGAC | 4 cut(s) | 236, 333, 1087, 1701 |
| FatI | CATG | 5 cut(s) | 81, 951, 961, 1278, 1625 |
| FauI | CCCGC | 2 cut(s) | 1149, 1436 |
| Fnu4HI | GCNGC | 6 cut(s) | 233, 357, 696, 856, 1038, 1057 |
| FokI | GGATG | 3 cut(s) | 274, 691, 1113 |
| Fsp4HI | GCNGC | 6 cut(s) | 233, 357, 696, 856, 1038, 1057 |
| FspBI | CTAG | 5 cut(s) | 206, 578, 683, 1727, 1746 |
| GlaI | GCGC | 1 cut(s) | 335 |
| GluI | GCNGC | 6 cut(s) | 233, 357, 696, 856, 1038, 1057 |
| GsuI | CTGGAG | 1 cut(s) | 1662 |
| HaeIII | GGCC | 2 cut(s) | 1015, 1581 |
| HapII | CCGG | 4 cut(s) | 645, 1016, 1582, 1621 |
| HgaI | GACGC | 4 cut(s) | 293, 819, 1126, 1138 |
| HhaI | GCGC | 1 cut(s) | 336 |
| Hin1II | CATG | 5 cut(s) | 85, 955, 965, 1282, 1629 |
| Hin6I | GCGC | 1 cut(s) | 334 |
| HinP1I | GCGC | 1 cut(s) | 334 |
| HinfI | GANTC | 7 cut(s) | 249, 431, 821, 1630, 1688, 1714, 1761 |
| HpaII | CCGG | 4 cut(s) | 645, 1016, 1582, 1621 |
| HphI | GGTGA | 6 cut(s) | 26, 287, 596, 765, 816, 1625 |
| Hpy166II | GTNNAC | 1 cut(s) | 283 |
| Hpy188I | TCNGA | 8 cut(s) | 261, 408, 781, 813, 842, 1643, 1659, 1760 |
| Hpy188III | TCNNGA | 7 cut(s) | 99, 246, 923, 1088, 1126, 1679, 1767 |
| Hpy8I | GTNNAC | 1 cut(s) | 283 |
| Hpy99I | CGWCG | 3 cut(s) | 835, 842, 971 |
| HpyAV | CCTTC | 3 cut(s) | 967, 1154, 1220 |
| HpyCH4IV | ACGT | 5 cut(s) | 279, 419, 1026, 1222, 1385 |
| HpyCH4V | TGCA | 3 cut(s) | 31, 572, 698 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 331, 578, 962 |
| HpyF3I | CTNAG | 6 cut(s) | 810, 872, 1106, 1442, 1612, 1757 |
| HpySE526I | ACGT | 5 cut(s) | 279, 419, 1026, 1222, 1385 |
| Hsp92II | CATG | 5 cut(s) | 85, 955, 965, 1282, 1629 |
| HspAI | GCGC | 1 cut(s) | 334 |
| KpnI | GGTACC | 1 cut(s) | 1140 |
| KspI | CCGCGG | 1 cut(s) | 233 |
| Kzo9I | GATC | 7 cut(s) | 226, 239, 256, 866, 919, 1301, 1594 |
| LguI | GCTCTTC | 1 cut(s) | 1127 |
| LmnI | GCTCC | 1 cut(s) | 1648 |
| Lsp1109I | GCAGC | 2 cut(s) | 682, 1049 |
| LweI | GCATC | 1 cut(s) | 1473 |
| MaeI | CTAG | 5 cut(s) | 206, 578, 683, 1727, 1746 |
| MaeII | ACGT | 5 cut(s) | 279, 419, 1026, 1222, 1385 |
| MaeIII | GTNAC | 2 cut(s) | 275, 513 |
| MalI | GATC | 7 cut(s) | 228, 241, 258, 868, 921, 1303, 1596 |
| MbiI | CCGCTC | 1 cut(s) | 1646 |
| MboI | GATC | 7 cut(s) | 226, 239, 256, 866, 919, 1301, 1594 |
| MboII | GAAGA | 7 cut(s) | 149, 602, 631, 826, 1114, 1126, 1205 |
| MflI | RGATCY | 1 cut(s) | 919 |
| MhlI | GDGCHC | 3 cut(s) | 205, 397, 1356 |
| MluI | ACGCGT | 1 cut(s) | 1147 |
| MlyI | GAGTC | 3 cut(s) | 1624, 1682, 1723 |
| MmeI | TCCRAC | 2 cut(s) | 820, 1515 |
| Mph1103I | ATGCAT | 1 cut(s) | 33 |
| MslI | CAYNNNNRTG | 2 cut(s) | 161, 1403 |
| MspA1I | CMGCKG | 2 cut(s) | 232, 1040 |
| MspI | CCGG | 4 cut(s) | 645, 1016, 1582, 1621 |
| MspR9I | CCNGG | 3 cut(s) | 802, 1017, 1577 |
| Mva1269I | GAATGC | 1 cut(s) | 1410 |
| MvaI | CCWGG | 2 cut(s) | 802, 1577 |
| MvnI | CGCG | 2 cut(s) | 232, 1149 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 331, 578, 962 |
| NciI | CCSGG | 1 cut(s) | 1017 |
| NdeII | GATC | 7 cut(s) | 226, 239, 256, 866, 919, 1301, 1594 |
| NlaIII | CATG | 5 cut(s) | 85, 955, 965, 1282, 1629 |
| NlaIV | GGNNCC | 3 cut(s) | 321, 1138, 1208 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| NsiI | ATGCAT | 1 cut(s) | 33 |
| PciSI | GCTCTTC | 1 cut(s) | 1127 |
| PctI | GAATGC | 1 cut(s) | 1410 |
| PfeI | GAWTC | 4 cut(s) | 249, 431, 821, 1761 |
| PflFI | GACNNNGTC | 1 cut(s) | 1384 |
| PkrI | GCNGC | 6 cut(s) | 234, 358, 697, 857, 1039, 1058 |
| PleI | GAGTC | 3 cut(s) | 1624, 1682, 1722 |
| PpsI | GAGTC | 3 cut(s) | 1624, 1682, 1722 |
| Ppu21I | YACGTR | 1 cut(s) | 420 |
| PpuMI | RGGWCCY | 1 cut(s) | 1207 |
| PshBI | ATTAAT | 1 cut(s) | 465 |
| Psp5II | RGGWCCY | 1 cut(s) | 1207 |
| Psp6I | CCWGG | 2 cut(s) | 800, 1575 |
| PspGI | CCWGG | 2 cut(s) | 800, 1575 |
| PspN4I | GGNNCC | 3 cut(s) | 321, 1138, 1208 |
| PspPI | GGNCC | 3 cut(s) | 320, 1207, 1579 |
| PspPPI | RGGWCCY | 1 cut(s) | 1207 |
| PsuI | RGATCY | 1 cut(s) | 919 |
| PsyI | GACNNNGTC | 1 cut(s) | 1384 |
| PvuII | CAGCTG | 1 cut(s) | 1040 |
| RsaI | GTAC | 2 cut(s) | 1138, 1265 |
| RsaNI | GTAC | 2 cut(s) | 1137, 1264 |
| RseI | CAYNNNNRTG | 2 cut(s) | 161, 1403 |
| SacII | CCGCGG | 1 cut(s) | 233 |
| SapI | GCTCTTC | 1 cut(s) | 1127 |
| SatI | GCNGC | 6 cut(s) | 233, 357, 696, 856, 1038, 1057 |
| Sau3AI | GATC | 7 cut(s) | 226, 239, 256, 866, 919, 1301, 1594 |
| Sau96I | GGNCC | 3 cut(s) | 320, 1207, 1579 |
| SchI | GAGTC | 3 cut(s) | 1624, 1682, 1723 |
| ScrFI | CCNGG | 3 cut(s) | 802, 1017, 1577 |
| SduI | GDGCHC | 3 cut(s) | 205, 397, 1356 |
| SfaNI | GCATC | 1 cut(s) | 1473 |
| SfcI | CTRYAG | 3 cut(s) | 435, 723, 1305 |
| Sfr303I | CCGCGG | 1 cut(s) | 233 |
| SgrBI | CCGCGG | 1 cut(s) | 233 |
| SinI | GGWCC | 2 cut(s) | 320, 1207 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 161, 1403 |
| SspI | AATATT | 1 cut(s) | 1192 |
| SspMI | CTAG | 5 cut(s) | 206, 578, 683, 1727, 1746 |
| StyD4I | CCNGG | 3 cut(s) | 800, 1015, 1575 |
| TaiI | ACGT | 5 cut(s) | 282, 422, 1029, 1225, 1388 |
| TaqI | TCGA | 7 cut(s) | 98, 924, 1050, 1087, 1300, 1350, 1379 |
| TatI | WGTACW | 1 cut(s) | 1263 |
| TauI | GCSGC | 4 cut(s) | 235, 359, 858, 1059 |
| TfiI | GAWTC | 4 cut(s) | 249, 431, 821, 1761 |
| TscAI | CASTG | 3 cut(s) | 259, 744, 876 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| TseI | GCWGC | 2 cut(s) | 695, 1037 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 5 cut(s) | 98, 150, 159, 665, 940 |
| TspGWI | ACGGA | 3 cut(s) | 833, 1406, 1676 |
| TspRI | CASTG | 3 cut(s) | 259, 744, 876 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1384 |
| VpaK11BI | GGWCC | 2 cut(s) | 320, 1207 |
| VspI | ATTAAT | 1 cut(s) | 465 |
| XspI | CTAG | 5 cut(s) | 206, 578, 683, 1727, 1746 |
| Zsp2I | ATGCAT | 1 cut(s) | 33 |