RchiOBHm_Chr1g0364971

serine arginine-rich splicing factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
56019418 .. 56022575
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58964

Sequence Viewer

Length: 921 bp
ATGCCTCGTCATGATGACCGCCACGGTGGTACACGGCTCTATGTTGGTCGCTTGTCGTCCCGGACAAGATCACGGGAACTGGAAGATGTATTCAGCAGATATGGAAGAGTACGTGATGTGGATATGAAGCGTGATTTCGCCTTTGTTGAATTTAATGATCCCCGTGATGCTGATGACGCAAGATATAGCCTGAATGGTCGGGATGTTGATGGGAGCCGTTTAATTGTGGAATTTGCCAGGGGGGCACCACGTGGTCCAGGTGGATCCCGTGAGTATCTTGGTAGAGGACCTCCTCCTGGTTCAGGGCGCTGTTTCAATTGTGGACTTGATGGGCACTGGGCTCGAGATTGCAAAGCTGGGGACTGGAAGAATAAGTGTTATCGCTGTGGGGAACGAGGCCACATTGAAAGAAATTGTCAGAACAGCCCGAAGAAAACCTCCTCCAAACGTGGGCGGAGTCACTCACGCTCACCAAGTCCAAGGCGGGGCAGAAGTCGAAGCCGTAGTTACAGCAGGGGTCATAGTTACAGTCAATCAAGATCACCTGTGAGGAGAGAAAGGAGTCTAGAGAGAAGATCAAGAAGTCCTGCAGACAGCCGGAGCCCTAAGCGTCGCAGGGCTTCTCCACCACCTTCCAAGGGGAGGAAGCGTGACCAATCTCCCGATGGGAGAAGCCCACAAGAGCGGCGTAGTCTCTCCCCTCAGGATCGCCGATCTGACTACAGTAGGAGTCCCAGGGGAAAGAGTAGAAGCCCTACAGGTGATGCCGAAGAGAAAAGCAATGGTGATAAGATGCACAGAAGCCCTGTAGAAGAAAATGGCCATAGCCGCAGCCCAAGCCCCGTACGTAGAGGTGACAGGAGCCCCGTTGAAGAGGATGATGATAACCACGGTTCTCCAAGAGGCAGTGAATCAGCTTAA

Protein Analysis

306

Amino Acids

34.71

Weight (kDa)

10.9

Isoelectric Point (pI)

108.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 13 - 74 3.2e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AccBSI CCGCTC 1 cut(s) 685
AciI CCGC 5 cut(s) 19, 454, 484, 685, 829
AclWI GGATC 4 cut(s) 152, 258, 271, 714
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 2 cut(s) 149, 230
AcvI CACGTG 1 cut(s) 251
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 3 cut(s) 31, 111, 846
AfiI CCNNNNNNNGG 6 cut(s) 296, 302, 450, 485, 638, 642
AgsI TTSAA 4 cut(s) 149, 316, 407, 872
AjnI CCWGG 4 cut(s) 236, 256, 295, 734
AluBI AGCT 2 cut(s) 356, 917
AluI AGCT 2 cut(s) 356, 917
Alw26I GTCTC 1 cut(s) 698
AlwI GGATC 4 cut(s) 152, 258, 271, 714
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 2 cut(s) 397, 820
ApeKI GCWGC 1 cut(s) 831
ApoI RAATTY 2 cut(s) 149, 230
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 254, 287
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 5 cut(s) 462, 534, 773, 797, 866
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 2 cut(s) 254, 287
AxyI CCTNAGG 1 cut(s) 702
BaeGI GKGCMC 2 cut(s) 247, 336
BalI TGGCCA 1 cut(s) 822
BamHI GGATCC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 3 cut(s) 343, 605, 866
BbrPI CACGTG 1 cut(s) 251
BbvI GCAGC 1 cut(s) 843
BccI CCATC 3 cut(s) 203, 323, 659
BceAI ACGGC 3 cut(s) 50, 201, 486
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 4 cut(s) 238, 258, 297, 736
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 4 cut(s) 588, 721, 756, 807
BfoI RGCGCY 1 cut(s) 310
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 686, 829, 832
BlsI GCNGC 3 cut(s) 687, 830, 833
Bme1390I CCNGG 5 cut(s) 61, 238, 258, 297, 736
Bme18I GGWCC 2 cut(s) 254, 287
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 254, 287
BmiI GGNNCC 5 cut(s) 215, 246, 265, 602, 863
BmrFI CCNGG 5 cut(s) 61, 238, 258, 297, 736
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 3 cut(s) 157, 754, 783
BmuI ACTGGG 1 cut(s) 346
Bpu10I CCTNAGC 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 61
BsaAI YACGTR 3 cut(s) 113, 251, 848
BsaJI CCNNGG 7 cut(s) 22, 237, 479, 636, 734, 735, 889
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 6 cut(s) 296, 302, 450, 485, 638, 642
Bse1I ACTGG 3 cut(s) 84, 341, 368
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 1 cut(s) 787
BseBI CCWGG 4 cut(s) 238, 258, 297, 736
BseDI CCNNGG 7 cut(s) 22, 237, 479, 636, 734, 735, 889
BseGI GGATG 2 cut(s) 208, 883
BseLI CCNNNNNNNGG 6 cut(s) 296, 302, 450, 485, 638, 642
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 1 cut(s) 716
BseNI ACTGG 3 cut(s) 84, 341, 368
BseRI GAGGAG 3 cut(s) 282, 430, 565
BseSI GKGCMC 2 cut(s) 247, 336
BseXI GCAGC 1 cut(s) 843
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 2 cut(s) 399, 822
BshNI GGYRCC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 61, 598
BsiWI CGTACG 1 cut(s) 844
BslFI GGGAC 3 cut(s) 43, 374, 717
BslI CCNNNNNNNGG 6 cut(s) 296, 302, 450, 485, 638, 642
BsmAI GTCTC 1 cut(s) 698
BsmFI GGGAC 3 cut(s) 43, 374, 717
BsnI GGCC 2 cut(s) 399, 822
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 5 cut(s) 247, 336, 343, 605, 866
Bsp143I GATC 7 cut(s) 68, 157, 263, 539, 575, 706, 713
BspACI CCGC 5 cut(s) 19, 454, 484, 685, 829
BspANI GGCC 2 cut(s) 399, 822
BspCNI CTCAG 1 cut(s) 715
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 5 cut(s) 215, 246, 265, 602, 863
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 4 cut(s) 152, 258, 271, 714
BspT107I GGYRCC 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 685
BsrDI GCAATG 1 cut(s) 787
BsrI ACTGG 3 cut(s) 84, 341, 368
BssECI CCNNGG 7 cut(s) 22, 237, 479, 636, 734, 735, 889
BssMI GATC 7 cut(s) 68, 157, 263, 539, 575, 706, 713
BssT1I CCWWGG 2 cut(s) 479, 636
Bst2UI CCWGG 4 cut(s) 238, 258, 297, 736
Bst4CI ACNGT 4 cut(s) 26, 530, 725, 893
Bst6I CTCTTC 3 cut(s) 100, 765, 867
BstBAI YACGTR 3 cut(s) 113, 251, 848
BstDEI CTNAG 2 cut(s) 606, 702
BstDSI CCRYGG 2 cut(s) 22, 889
BstENI CCTNNNNNAGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 208, 883
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 7 cut(s) 71, 160, 266, 542, 578, 709, 716
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 7 cut(s) 68, 157, 263, 539, 575, 706, 713
BstMWI GCNNNNNNNGC 4 cut(s) 176, 242, 828, 837
BstNI CCWGG 4 cut(s) 238, 258, 297, 736
BstSCI CCNGG 5 cut(s) 59, 236, 256, 295, 734
BstSFI CTRYAG 4 cut(s) 588, 721, 756, 807
BstSLI GKGCMC 2 cut(s) 247, 336
BstSNI TACGTA 1 cut(s) 848
BstV1I GCAGC 1 cut(s) 843
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
Bsu36I CCTNAGG 1 cut(s) 702
BsuRI GGCC 2 cut(s) 399, 822
BtgI CCRYGG 2 cut(s) 22, 889
BtsCI GGATG 2 cut(s) 208, 883
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 2 cut(s) 334, 913
CciI TCATGA 1 cut(s) 10
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 254, 287
CseI GACGC 2 cut(s) 185, 599
Csp6I GTAC 3 cut(s) 30, 110, 845
CviAII CATG 1 cut(s) 11
CviQI GTAC 3 cut(s) 30, 110, 845
DdeI CTNAG 2 cut(s) 606, 702
DpnI GATC 7 cut(s) 70, 159, 265, 541, 577, 708, 715
DpnII GATC 7 cut(s) 68, 157, 263, 539, 575, 706, 713
DraIII CACNNNGTG 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 820
Eam1104I CTCTTC 3 cut(s) 100, 765, 867
EarI CTCTTC 3 cut(s) 100, 765, 867
EciI GGCGGA 1 cut(s) 469
Eco105I TACGTA 1 cut(s) 848
Eco130I CCWWGG 2 cut(s) 479, 636
Eco24I GRGCYC 3 cut(s) 343, 605, 866
Eco47I GGWCC 2 cut(s) 254, 287
Eco72I CACGTG 1 cut(s) 251
Eco81I CCTNAGG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 342
EcoNI CCTNNNNNAGG 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 4 cut(s) 236, 256, 295, 734
EcoT14I CCWWGG 2 cut(s) 479, 636
EcoT38I GRGCYC 3 cut(s) 343, 605, 866
ErhI CCWWGG 2 cut(s) 479, 636
FaeI CATG 1 cut(s) 14
FaiI YATR 7 cut(s) 12, 42, 102, 125, 186, 522, 825
FaqI GGGAC 3 cut(s) 43, 374, 717
FatI CATG 1 cut(s) 10
FauI CCCGC 1 cut(s) 477
Fnu4HI GCNGC 3 cut(s) 686, 829, 832
FokI GGATG 2 cut(s) 215, 890
FriOI GRGCYC 3 cut(s) 343, 605, 866
Fsp4HI GCNGC 3 cut(s) 686, 829, 832
FspBI CTAG 1 cut(s) 566
GlaI GCGC 1 cut(s) 308
GluI GCNGC 3 cut(s) 686, 829, 832
GsaI CCCAGC 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 310
HaeIII GGCC 2 cut(s) 399, 822
HapII CCGG 2 cut(s) 61, 598
HgaI GACGC 2 cut(s) 185, 599
HhaI GCGC 1 cut(s) 309
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 4 cut(s) 457, 562, 730, 911
HpaII CCGG 2 cut(s) 61, 598
HphI GGTGA 5 cut(s) 462, 534, 773, 797, 866
Hpy166II GTNNAC 2 cut(s) 32, 323
Hpy188I TCNGA 2 cut(s) 420, 718
Hpy188III TCNNGA 8 cut(s) 11, 200, 344, 537, 566, 579, 662, 704
Hpy8I GTNNAC 2 cut(s) 32, 323
Hpy99I CGWCG 1 cut(s) 615
HpyAV CCTTC 1 cut(s) 642
HpyCH4III ACNGT 4 cut(s) 26, 530, 725, 893
HpyCH4IV ACGT 4 cut(s) 112, 250, 448, 847
HpyCH4V TGCA 3 cut(s) 351, 590, 796
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 242, 828, 837
HpyF3I CTNAG 2 cut(s) 606, 702
HpySE526I ACGT 4 cut(s) 112, 250, 448, 847
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 7 cut(s) 68, 157, 263, 539, 575, 706, 713
LmnI GCTCC 3 cut(s) 213, 600, 861
Lsp1109I GCAGC 1 cut(s) 843
LweI GCATC 3 cut(s) 157, 754, 783
MaeI CTAG 1 cut(s) 566
MaeII ACGT 4 cut(s) 112, 250, 448, 847
MaeIII GTNAC 5 cut(s) 458, 506, 524, 650, 854
MalI GATC 7 cut(s) 70, 159, 265, 541, 577, 708, 715
MbiI CCGCTC 1 cut(s) 685
MboI GATC 7 cut(s) 68, 157, 263, 539, 575, 706, 713
MboII GAAGA 8 cut(s) 95, 117, 379, 442, 585, 782, 824, 884
MfeI CAATTG 1 cut(s) 316
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 5 cut(s) 247, 336, 343, 605, 866
MlsI TGGCCA 1 cut(s) 822
MluCI AATT 5 cut(s) 149, 222, 230, 316, 412
MluNI TGGCCA 1 cut(s) 822
MlyI GAGTC 3 cut(s) 466, 571, 739
Mox20I TGGCCA 1 cut(s) 822
MscI TGGCCA 1 cut(s) 822
MseI TTAA 3 cut(s) 153, 221, 919
Msp20I TGGCCA 1 cut(s) 822
MspI CCGG 2 cut(s) 61, 598
MspR9I CCNGG 5 cut(s) 61, 238, 258, 297, 736
MunI CAATTG 1 cut(s) 316
MvaI CCWGG 4 cut(s) 238, 258, 297, 736
MwoI GCNNNNNNNGC 4 cut(s) 176, 242, 828, 837
NciI CCSGG 1 cut(s) 61
NdeII GATC 7 cut(s) 68, 157, 263, 539, 575, 706, 713
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 5 cut(s) 215, 246, 265, 602, 863
NmuCI GTSAC 3 cut(s) 458, 650, 854
PaeR7I CTCGAG 1 cut(s) 342
PagI TCATGA 1 cut(s) 10
PasI CCCWGGG 1 cut(s) 735
PfeI GAWTC 1 cut(s) 911
Pfl23II CGTACG 1 cut(s) 844
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 3 cut(s) 687, 830, 833
PleI GAGTC 3 cut(s) 465, 570, 738
PmaCI CACGTG 1 cut(s) 251
PmlI CACGTG 1 cut(s) 251
PpsI GAGTC 3 cut(s) 465, 570, 738
Ppu21I YACGTR 3 cut(s) 113, 251, 848
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 4 cut(s) 236, 256, 295, 734
PspCI CACGTG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 4 cut(s) 236, 256, 295, 734
PspLI CGTACG 1 cut(s) 844
PspN4I GGNNCC 5 cut(s) 215, 246, 265, 602, 863
PspPI GGNCC 2 cut(s) 254, 287
PspPPI RGGWCCY 1 cut(s) 287
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 3 cut(s) 31, 111, 846
RsaNI GTAC 3 cut(s) 30, 110, 845
SaqAI TTAA 3 cut(s) 153, 221, 919
SatI GCNGC 3 cut(s) 686, 829, 832
Sau3AI GATC 7 cut(s) 68, 157, 263, 539, 575, 706, 713
Sau96I GGNCC 2 cut(s) 254, 287
SchI GAGTC 3 cut(s) 466, 571, 739
ScrFI CCNGG 5 cut(s) 61, 238, 258, 297, 736
SduI GDGCHC 5 cut(s) 247, 336, 343, 605, 866
SfaNI GCATC 3 cut(s) 157, 754, 783
SfcI CTRYAG 4 cut(s) 588, 721, 756, 807
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 2 cut(s) 254, 287
SlaI CTCGAG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
SnaBI TACGTA 1 cut(s) 848
Sse9I AATT 5 cut(s) 149, 222, 230, 316, 412
SsiI CCGC 5 cut(s) 19, 454, 484, 685, 829
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 5 cut(s) 59, 236, 256, 295, 734
StyI CCWWGG 2 cut(s) 479, 636
TaaI ACNGT 4 cut(s) 26, 530, 725, 893
TaiI ACGT 4 cut(s) 115, 253, 451, 850
TaqI TCGA 2 cut(s) 343, 496
TasI AATT 5 cut(s) 149, 222, 230, 316, 412
TauI GCSGC 2 cut(s) 688, 831
TfiI GAWTC 1 cut(s) 911
Tru1I TTAA 3 cut(s) 153, 221, 919
Tru9I TTAA 3 cut(s) 153, 221, 919
TscAI CASTG 2 cut(s) 341, 913
TseFI GTSAC 3 cut(s) 458, 650, 854
TseI GCWGC 1 cut(s) 831
Tsp45I GTSAC 3 cut(s) 458, 650, 854
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 2 cut(s) 341, 913
VpaK11BI GGWCC 2 cut(s) 254, 287
XagI CCTNNNNNAGG 1 cut(s) 300
XapI RAATTY 2 cut(s) 149, 230
XbaI TCTAGA 1 cut(s) 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XhoI CTCGAG 1 cut(s) 342
XspI CTAG 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.