Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000846

Physical Location & Seq

Genomic Coordinates Forward (+)

11835566 .. 11844139

Gene Structure 8574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027455

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2499 bp

ATGCTACTGGTAGCTCGACAATTCAGCCATCGCTGGTGGCGCCGCCGCCGTCCACACATCGGCCTCTCCCACACTCCACTCACCAACCTCAACTTCCACTCCGAATCCGACGACTTCTTGCCGTGGCTGGAGCGCAAGTCCGGCACGAAAATCTCTTCCTCGCTTTCCATCGGGAAATCCACTCTCGGAACGGCTCTCTTTGCTTCCAAGAGCATAAGAGCCGGAGACTGCATATTGAAAGTTCCGTACAGCGTGCAACTAGCTCCGGATAATCTTGCTCCGGAATTGAGAGCTTTGTTAGGTGATCGAGTCGGTGATGTTGCGAAGGTCGCCATTGTCATTTTGCTTGAGCAGAAAATGGGCCAGGACTCTGAATGGGCTCCTTACATCAGCCGGCTTCCTCGCCCTGAGGAGATGCACAGCACAATATTTTGGAGCGAAGATGAGTTGGAGATGATTCGTCAAAGCTCTCTGTATCAGGAGACAATTAATCAAAGGTCCCTTGTTGAAAAGGAATTTTTGGCATTTAGAAGGTTTCAGGCTCTTCAGCACTTTCCTGAGATGTTCCAAAGTATCAGCTGTAAGGATTTCATGCATGCATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCAGAAAGGGTTATTCCCTGATTCCATTTGCAGATTTTTTGAACCATGATGGGACTTCAGAATCAGTTGTGATGAGTGATGATGACAAACATTTCTCAGAGGTGATTGCTGATTGTAATTTTGCTCAAGGTGAACAGGTGCTGATAAGATATGGCAACTTTTCAAACGCTACCCTGCTTTTGGACTTTGGGTTTACACTTCCATACAACATTCACGACCAGGTCCAGATCCAGGTAAACATACCTCATCATGATATTCTTCGTGATTTGAAGTTTGAACTTTTGACGAGACATCATAGACCAATCCACAATGACGTCAATGGTTTCAACTCTTCAGTGGATTGTTTCACAATCAAGGAAGTGAAATCTGGTAGTGGAAAGGGGAAAGGAATTCCACAGTCACTTCGTGCACTTGCTCGTGTCCTATGTTGTACCTCTTGTGAAGAACTTAGTGACCTGGCCAATGAAGCAGTGGAACATGATGGTCGATTGGCTCGGCGTCCTTTAACAAATAGAAGCAGAGAGATTGAAGCACATCAGATGCTGATGGAAAAATTAACCCAATTAGCTGAGGATTGTAATGCATCTTTAAAGTCTCTGGGACCCATAAGTTTTCCTGTTACGCGTGAAAGGCTCTCTCTGCGGAGTCAAATGGCTCGCGATCTCCTTAATGGAGAGCTTCGCATCCTCAAATCCGCCAAAAGGAGAATGATGACATACTACTCGTTGAGCAATTCCACGCATATTATCTACATTAATTACATCCAAATCATTCCCTTTCCCCCCAAACCTTCGTCTTCTTCAGATAAAATGCCTCGTCATGATGACCGCCATGGTGGTACACGGCTCTATGTTGGTCGCTTGTCGTCCCGGACAAGATCACGGGAACTGGAGGATGTGTTCAGCAGATATGGAAGAGTACGTGATGTGGATATGAAGCGTGATTTTGCCTTTGTTGAATTTAATGATCCCCGTGATGCTGATGACGCAAGATATAGCCTGAATGGTCGGGATGTTGATGGGAGCCGTTTAATTGTGGAATTTGCCAGGGGGGCACCACGTGGTCCAGGTGGATCCCGTGAGTATCTTGGTAGAGGGCCTCCTCCTGGTTCAGGGCGCTGTTTCAATTGTGGACTTGATGGGCACTGGGCTCGAGATTGCAAAGCTGGGGACTGGAAGAATAAGTGTTATCGCTGTGGGGAACGAGGCCACATTGAAAGAAATTGTCAGAACAGCCCGAAGAAAACCTCCTCCAAACGTGGGCGGAGTCACTCACGCTCACCAAGTCCAAGGCGGGGCAGAAGTCGAAGCCGTAGTTATAGCAGGGGTCATAGTTACAGTCAATCAAGATCACCTGTGAGGAGAGAAAGGAGTCTAGAGAGAAGATCAAGAAGTCCTGCAGACAGCCGGAGCCCTAAGCGTCGCAGGGCTTCTCCACCACCTTCCAAGGGGAGGAAGCGTGACCAATCTCCCGATGGGAGAAGCCCACAAGAGCGGCGTAGTGTCTCCCCACAGGATCGCCGATCTGACTACAGTAGGAGTCCCAGGGGAAAGAGTAGAAGCCCTATAGGTGATGCCGAAGAGAAAAGTAATGGTGATAAGATGCACAGAAGCCCTGTAGAAGAAAATGGCCATAGCCGCAGCCCAAGCCCCGTACGTAGGGGTGACAGGAGCCCTGTTGAAGAGGATGATGATAACCACGGAGATCTTGGGAGTGTAGTAGGTGGCCTCATTTCTGAGCGCAAATTGAAAACTGGAAGGAGGATGTTAAGTGGGAAGGAAAGAAAAATGAAAAGGCAGGCAACTCCGGCTAGACATGTGTCGCAGATTGAGAATGGTAGGCAGCAAGGTGATCGCCTGGCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

833

Amino Acids

94.61

Weight (kDa)

9.92

Isoelectric Point (pI)

72.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	493 - 554	1.3e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55080 AT3G55080 AT3G55080 AT3G55080 AT3G55080
fragaria_vesca	FvH4_7g20711 FvH4_7g20711 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720 FvH4_7g20720
malus_domestica	MD00G1163800.v1.1 MD01G1115300.v1.1 MD01G1116200.v1.1 MD01G1116300.v1.1 MD01G1116400.v1.1 MD01G1116500.v1.1 MD01G1116800.v1.1 MD01G1117100.v1.1 MD07G1184300.v1.1
prunus_persica	Prupe.2G224200_v2.0.a1 Prupe.2G224200_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1 Prupe.2G224300_v2.0.a1
pyrus_communis	pycom01g00300 pycom01g00310 pycom01g00470 pycom01g00480 pycom01g14450 pycom07g17660
rosa_chinensis	RchiOBHm_Chr1g0364971 RchiOBHm_Chr1g0364981
rosa_laevigata	RLG00000027455
rosa_multiflora	Rmu_sc0042820.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291620 Rroxscaffold_4G00291630 Rroxscaffold_4G00292030 Rroxscaffold_4G00292040
rosa_rugosa	Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318700 Rorug01G0318800
rosa_samantha	Rh1AG327600 Rh1BG288900 Rh1CG305500 Rh1CG305600 Rh1DG320400
rosa_wichuraiana	Rw1G029030 Rw1G029040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	948
AccB1I	GGYRCC	2 cut(s)	39, 1684
AccBSI	CCGCTC	1 cut(s)	2125
AccII	CGCG	2 cut(s)	1255, 1290
AccIII	TCCGGA	2 cut(s)	265, 280
AciI	CCGC	9 cut(s)	43, 46, 1273, 1326, 1459, 1894, 1924, 2125, 2269
AclWI	GGATC	5 cut(s)	853, 1592, 1698, 1711, 2154
AcoI	YGGCCR	2 cut(s)	1089, 2260
AcsI	RAATTY	4 cut(s)	515, 1020, 1589, 1670
AcuI	CTGAAG	4 cut(s)	530, 672, 948, 1416
AcvI	CACGTG	1 cut(s)	1691
AcyI	GRCGYC	3 cut(s)	40, 945, 1129
AdeI	CACNNNGTG	2 cut(s)	1037, 1691
AfaI	GTAC	5 cut(s)	248, 1063, 1471, 1551, 2286
AflIII	ACRYGT	2 cut(s)	1253, 2446
AjnI	CCWGG	9 cut(s)	363, 849, 861, 1086, 1676, 1696, 1735, 2174, 2487
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AloI	GAACNNNNNNTCC	2 cut(s)	1514, 1546
AluBI	AGCT	9 cut(s)	14, 263, 293, 468, 579, 1199, 1309, 1796, 2496
AluI	AGCT	9 cut(s)	14, 263, 293, 468, 579, 1199, 1309, 1796, 2496
Alw21I	GWGCWC	1 cut(s)	1042
Alw26I	GTCTC	5 cut(s)	219, 476, 913, 1230, 2140
Alw44I	GTGCAC	1 cut(s)	1038
AlwI	GGATC	5 cut(s)	853, 1592, 1698, 1711, 2154
AlwNI	CAGNNNCTG	2 cut(s)	772, 1174
Ama87I	CYCGRG	2 cut(s)	618, 1782
Aor13HI	TCCGGA	2 cut(s)	265, 280
AoxI	GGCC	7 cut(s)	61, 361, 1089, 1727, 1837, 2260, 2356
ApaLI	GTGCAC	1 cut(s)	1038
ApeKI	GCWGC	2 cut(s)	2271, 2473
ApoI	RAATTY	4 cut(s)	515, 1020, 1589, 1670
AseI	ATTAAT	2 cut(s)	489, 1386
AspLEI	GCGC	4 cut(s)	42, 135, 1749, 2373
AspS9I	GGNCC	6 cut(s)	361, 498, 853, 1232, 1694, 1727
AsuC2I	CCSGG	1 cut(s)	1501
AsuNHI	GCTAGC	1 cut(s)	2492
AvaI	CYCGRG	2 cut(s)	618, 1782
AvaII	GGWCC	4 cut(s)	498, 853, 1232, 1694
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	3 cut(s)	1042, 1687, 1776
BalI	TGGCCA	2 cut(s)	1091, 2262
BamHI	GGATCC	1 cut(s)	1703
BanI	GGYRCC	2 cut(s)	39, 1684
BanII	GRGCYC	4 cut(s)	382, 1783, 2045, 2306
BauI	CACGAG	1 cut(s)	1047
BbrPI	CACGTG	1 cut(s)	1691
BbsI	GAAGAC	1 cut(s)	1419
Bbv12I	GWGCWC	1 cut(s)	1042
BbvCI	CCTCAGC	1 cut(s)	1200
BbvI	GCAGC	2 cut(s)	2283, 2485
BccI	CCATC	8 cut(s)	36, 176, 674, 1106, 1171, 1643, 1763, 2099
BceAI	ACGGC	6 cut(s)	33, 106, 207, 1490, 1641, 1926
BcgI	CGANNNNNNTGC	4 cut(s)	1763, 1797, 2465, 2499
BciT130I	CCWGG	9 cut(s)	365, 851, 863, 1088, 1678, 1698, 1737, 2176, 2489
BcnI	CCSGG	1 cut(s)	1501
BcoDI	GTCTC	5 cut(s)	219, 476, 913, 1230, 2140
BfaI	CTAG	4 cut(s)	260, 2006, 2442, 2493
BfmI	CTRYAG	4 cut(s)	2028, 2161, 2196, 2247
BfoI	RGCGCY	2 cut(s)	43, 1750
BglI	GCCNNNNNGGC	1 cut(s)	1682
BglII	AGATCT	1 cut(s)	2335
BisI	GCNGC	6 cut(s)	43, 46, 2126, 2269, 2272, 2474
BlsI	GCNGC	6 cut(s)	44, 47, 2127, 2270, 2273, 2475
Bme18I	GGWCC	4 cut(s)	498, 853, 1232, 1694
BmeT110I	CYCGRG	2 cut(s)	618, 1782
BmgT120I	GGNCC	6 cut(s)	361, 498, 853, 1232, 1694, 1727
BmrI	ACTGGG	1 cut(s)	1786
BmsI	GCATC	7 cut(s)	405, 1161, 1223, 1323, 1597, 2194, 2223
BmtI	GCTAGC	1 cut(s)	2496
BmuI	ACTGGG	1 cut(s)	1786
BoxI	GACNNNNGTC	1 cut(s)	2449
BpiI	GAAGAC	1 cut(s)	1419
BpmI	CTGGAG	2 cut(s)	149, 1541
Bpu10I	CCTNAGC	2 cut(s)	1200, 2046
BpuEI	CTTGAG	2 cut(s)	368, 741
BpuMI	CCSGG	1 cut(s)	1501
BsaAI	YACGTR	3 cut(s)	1553, 1691, 2288
BsaHI	GRCGYC	3 cut(s)	40, 945, 1129
BsaJI	CCNNGG	8 cut(s)	122, 1462, 1677, 1919, 2076, 2174, 2175, 2329
BsaWI	WCCGGW	2 cut(s)	265, 280
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 122, 152, 1514, 1544, 2074, 2104
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	5 cut(s)	12, 1524, 1781, 1808, 2389
Bse21I	CCTNAGG	1 cut(s)	408
BseAI	TCCGGA	2 cut(s)	265, 280
BseBI	CCWGG	9 cut(s)	365, 851, 863, 1088, 1678, 1698, 1737, 2176, 2489
BseDI	CCNNGG	8 cut(s)	122, 1462, 1677, 1919, 2076, 2174, 2175, 2329
BseGI	GGATG	6 cut(s)	1314, 1392, 1531, 1648, 2323, 2400
BseMII	CTCAG	5 cut(s)	399, 549, 741, 1191, 2358
BseNI	ACTGG	5 cut(s)	12, 1524, 1781, 1808, 2389
BseRI	GAGGAG	4 cut(s)	425, 1722, 1870, 2005
BseSI	GKGCMC	3 cut(s)	1042, 1687, 1776
BseXI	GCAGC	2 cut(s)	2283, 2485
BseYI	CCCAGC	1 cut(s)	1796
Bsh1236I	CGCG	2 cut(s)	1255, 1290
BshFI	GGCC	7 cut(s)	63, 363, 1091, 1729, 1839, 2262, 2358
BshNI	GGYRCC	2 cut(s)	39, 1684
BsiHKAI	GWGCWC	1 cut(s)	1042
BsiHKCI	CYCGRG	2 cut(s)	618, 1782
BsiSI	CCGG	8 cut(s)	141, 222, 266, 281, 394, 1501, 2038, 2438
BsiWI	CGTACG	1 cut(s)	2284
BslFI	GGGAC	6 cut(s)	484, 697, 1245, 1483, 1814, 2157
BsmAI	GTCTC	5 cut(s)	219, 476, 913, 1230, 2140
BsmFI	GGGAC	6 cut(s)	484, 697, 1245, 1483, 1814, 2157
BsnI	GGCC	7 cut(s)	63, 363, 1091, 1729, 1839, 2262, 2358
BsoBI	CYCGRG	2 cut(s)	618, 1782
Bsp1286I	GDGCHC	7 cut(s)	382, 1042, 1687, 1776, 1783, 2045, 2306
Bsp13I	TCCGGA	2 cut(s)	265, 280
Bsp19I	CCATGG	1 cut(s)	1462
Bsp68I	TCGCGA	1 cut(s)	1290
BspACI	CCGC	9 cut(s)	43, 46, 1273, 1326, 1459, 1894, 1924, 2125, 2269
BspANI	GGCC	7 cut(s)	63, 363, 1091, 1729, 1839, 2262, 2358
BspCNI	CTCAG	5 cut(s)	400, 550, 740, 1192, 2359
BspEI	TCCGGA	2 cut(s)	265, 280
BspFNI	CGCG	2 cut(s)	1255, 1290
BspHI	TCATGA	2 cut(s)	880, 1450
BspMAI	CTGCAG	1 cut(s)	2032
BspOI	GCTAGC	1 cut(s)	2496
BspPI	GGATC	5 cut(s)	853, 1592, 1698, 1711, 2154
BspQI	GCTCTTC	1 cut(s)	549
BspT107I	GGYRCC	2 cut(s)	39, 1684
BsrBI	CCGCTC	1 cut(s)	2125
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	5 cut(s)	12, 1524, 1781, 1808, 2389
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	8 cut(s)	122, 1462, 1677, 1919, 2076, 2174, 2175, 2329
BssNI	GRCGYC	3 cut(s)	40, 945, 1129
BssSI	CACGAG	1 cut(s)	1047
BssT1I	CCWWGG	3 cut(s)	1462, 1919, 2076
Bst2BI	CACGAG	1 cut(s)	1047
Bst2UI	CCWGG	9 cut(s)	365, 851, 863, 1088, 1678, 1698, 1737, 2176, 2489
Bst4CI	ACNGT	3 cut(s)	1029, 1970, 2165
Bst6I	CTCTTC	6 cut(s)	160, 549, 967, 1540, 2205, 2307
BstACI	GRCGYC	3 cut(s)	40, 945, 1129
BstBAI	YACGTR	3 cut(s)	1553, 1691, 2288
BstC8I	GCNNGC	6 cut(s)	254, 395, 597, 1288, 2430, 2494
BstDEI	CTNAG	7 cut(s)	408, 558, 727, 1079, 1200, 2046, 2367
BstDSI	CCRYGG	3 cut(s)	122, 1462, 2329
BstENI	CCTNNNNNAGG	1 cut(s)	1740
BstF5I	GGATG	6 cut(s)	1314, 1392, 1531, 1648, 2323, 2400
BstFNI	CGCG	2 cut(s)	1255, 1290
BstH2I	RGCGCY	2 cut(s)	43, 1750
BstHHI	GCGC	4 cut(s)	42, 135, 1749, 2373
BstMAI	GTCTC	5 cut(s)	219, 476, 913, 1230, 2140
BstNI	CCWGG	9 cut(s)	365, 851, 863, 1088, 1678, 1698, 1737, 2176, 2489
BstNSI	RCATGY	2 cut(s)	599, 2450
BstPAI	GACNNNNGTC	1 cut(s)	2449
BstSFI	CTRYAG	4 cut(s)	2028, 2161, 2196, 2247
BstSLI	GKGCMC	3 cut(s)	1042, 1687, 1776
BstSNI	TACGTA	1 cut(s)	2288
BstUI	CGCG	2 cut(s)	1255, 1290
BstV1I	GCAGC	2 cut(s)	2283, 2485
BstV2I	GAAGAC	1 cut(s)	1419
BstX2I	RGATCY	3 cut(s)	858, 1703, 2335
BstYI	RGATCY	3 cut(s)	858, 1703, 2335
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	7 cut(s)	63, 363, 1091, 1729, 1839, 2262, 2358
BtgI	CCRYGG	3 cut(s)	122, 1462, 2329
BtgZI	GCGATG	1 cut(s)	14
BtsCI	GGATG	6 cut(s)	1314, 1392, 1531, 1648, 2323, 2400
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	3 cut(s)	972, 1107, 1774
BtuMI	TCGCGA	1 cut(s)	1290
Cac8I	GCNNGC	6 cut(s)	254, 395, 597, 1288, 2430, 2494
CaiI	CAGNNNCTG	2 cut(s)	772, 1174
CciI	TCATGA	2 cut(s)	880, 1450
CfoI	GCGC	4 cut(s)	42, 135, 1749, 2373
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	6 cut(s)	361, 498, 853, 1232, 1694, 1727
CseI	GACGC	3 cut(s)	1118, 1625, 2039
CsiI	ACCWGGT	1 cut(s)	849
Csp6I	GTAC	5 cut(s)	247, 1062, 1470, 1550, 2285
CviAII	CATG	9 cut(s)	592, 596, 624, 677, 881, 1109, 1451, 1463, 2447
CviQI	GTAC	5 cut(s)	247, 1062, 1470, 1550, 2285
DdeI	CTNAG	7 cut(s)	408, 558, 727, 1079, 1200, 2046, 2367
DinI	GGCGCC	1 cut(s)	41
DraI	TTTAAA	1 cut(s)	1221
DraIII	CACNNNGTG	2 cut(s)	1037, 1691
EaeI	YGGCCR	2 cut(s)	1089, 2260
Eam1104I	CTCTTC	6 cut(s)	160, 549, 967, 1540, 2205, 2307
EarI	CTCTTC	6 cut(s)	160, 549, 967, 1540, 2205, 2307
EciI	GGCGGA	2 cut(s)	1315, 1909
Eco105I	TACGTA	1 cut(s)	2288
Eco130I	CCWWGG	3 cut(s)	1462, 1919, 2076
Eco24I	GRGCYC	4 cut(s)	382, 1783, 2045, 2306
Eco47I	GGWCC	4 cut(s)	498, 853, 1232, 1694
Eco57I	CTGAAG	4 cut(s)	530, 672, 948, 1416
Eco72I	CACGTG	1 cut(s)	1691
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	2 cut(s)	618, 1782
EcoNI	CCTNNNNNAGG	1 cut(s)	1740
EcoO109I	RGGNCCY	3 cut(s)	498, 1232, 1727
EcoRI	GAATTC	1 cut(s)	1020
EcoRII	CCWGG	9 cut(s)	363, 849, 861, 1086, 1676, 1696, 1735, 2174, 2487
EcoT14I	CCWWGG	3 cut(s)	1462, 1919, 2076
EcoT22I	ATGCAT	3 cut(s)	597, 601, 1216
EcoT38I	GRGCYC	4 cut(s)	382, 1783, 2045, 2306
EgeI	GGCGCC	1 cut(s)	41
EheI	GGCGCC	1 cut(s)	41
ErhI	CCWWGG	3 cut(s)	1462, 1919, 2076
FaeI	CATG	9 cut(s)	595, 599, 627, 680, 884, 1112, 1454, 1466, 2450
FaqI	GGGAC	6 cut(s)	484, 697, 1245, 1483, 1814, 2157
FatI	CATG	9 cut(s)	591, 595, 623, 676, 880, 1108, 1450, 1462, 2446
FauI	CCCGC	1 cut(s)	1917
FauNDI	CATATG	1 cut(s)	601
Fnu4HI	GCNGC	6 cut(s)	43, 46, 2126, 2269, 2272, 2474
FokI	GGATG	6 cut(s)	1301, 1379, 1538, 1655, 2330, 2407
FriOI	GRGCYC	4 cut(s)	382, 1783, 2045, 2306
Fsp4HI	GCNGC	6 cut(s)	43, 46, 2126, 2269, 2272, 2474
FspBI	CTAG	4 cut(s)	260, 2006, 2442, 2493
GlaI	GCGC	4 cut(s)	41, 134, 1748, 2372
GluI	GCNGC	6 cut(s)	43, 46, 2126, 2269, 2272, 2474
GsaI	CCCAGC	1 cut(s)	1800
GsuI	CTGGAG	2 cut(s)	149, 1541
HaeII	RGCGCY	2 cut(s)	43, 1750
HaeIII	GGCC	7 cut(s)	63, 363, 1091, 1729, 1839, 2262, 2358
HapII	CCGG	8 cut(s)	141, 222, 266, 281, 394, 1501, 2038, 2438
HgaI	GACGC	3 cut(s)	1118, 1625, 2039
HhaI	GCGC	4 cut(s)	42, 135, 1749, 2373
Hin1I	GRCGYC	3 cut(s)	40, 945, 1129
Hin1II	CATG	9 cut(s)	595, 599, 627, 680, 884, 1112, 1454, 1466, 2450
Hin6I	GCGC	4 cut(s)	40, 133, 1747, 2371
HinP1I	GCGC	4 cut(s)	40, 133, 1747, 2371
HpaII	CCGG	8 cut(s)	141, 222, 266, 281, 394, 1501, 2038, 2438
Hpy166II	GTNNAC	7 cut(s)	53, 764, 825, 868, 1040, 1472, 1763
Hpy8I	GTNNAC	7 cut(s)	53, 764, 825, 868, 1040, 1472, 1763
Hpy99I	CGWCG	2 cut(s)	113, 2055
HpyAV	CCTTC	6 cut(s)	319, 525, 1431, 2082, 2382, 2401
HpyCH4III	ACNGT	3 cut(s)	1029, 1970, 2165
HpyCH4IV	ACGT	5 cut(s)	945, 1552, 1690, 1888, 2287
HpyF3I	CTNAG	7 cut(s)	408, 558, 727, 1079, 1200, 2046, 2367
HpySE526I	ACGT	5 cut(s)	945, 1552, 1690, 1888, 2287
Hsp92I	GRCGYC	3 cut(s)	40, 945, 1129
Hsp92II	CATG	9 cut(s)	595, 599, 627, 680, 884, 1112, 1454, 1466, 2450
HspAI	GCGC	4 cut(s)	40, 133, 1747, 2371
KasI	GGCGCC	1 cut(s)	39
KflI	GGGWCCC	1 cut(s)	1232
Kpn2I	TCCGGA	2 cut(s)	265, 280
KroI	GCCGGC	1 cut(s)	393
KroNI	GCCGGC	1 cut(s)	395
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	8 cut(s)	130, 268, 283, 385, 435, 1653, 2040, 2301
Lsp1109I	GCAGC	2 cut(s)	2283, 2485
LweI	GCATC	7 cut(s)	405, 1161, 1223, 1323, 1597, 2194, 2223
MabI	ACCWGGT	1 cut(s)	849
MaeI	CTAG	4 cut(s)	260, 2006, 2442, 2493
MaeII	ACGT	5 cut(s)	945, 1552, 1690, 1888, 2287
MaeIII	GTNAC	8 cut(s)	610, 1029, 1082, 1249, 1898, 1964, 2090, 2294
MbiI	CCGCTC	1 cut(s)	2125
MfeI	CAATTG	1 cut(s)	1756
MflI	RGATCY	3 cut(s)	858, 1703, 2335
MhlI	GDGCHC	7 cut(s)	382, 1042, 1687, 1776, 1783, 2045, 2306
MlsI	TGGCCA	2 cut(s)	1091, 2262
MluI	ACGCGT	1 cut(s)	1253
MluNI	TGGCCA	2 cut(s)	1091, 2262
Mly113I	GGCGCC	1 cut(s)	40
MlyI	GAGTC	6 cut(s)	318, 362, 1285, 1906, 2011, 2179
MmeI	TCCRAC	2 cut(s)	132, 429
Mox20I	TGGCCA	2 cut(s)	1091, 2262
Mph1103I	ATGCAT	3 cut(s)	597, 601, 1216
MroI	TCCGGA	2 cut(s)	265, 280
MroNI	GCCGGC	1 cut(s)	393
MscI	TGGCCA	2 cut(s)	1091, 2262
MseI	TTAA	9 cut(s)	489, 1136, 1187, 1220, 1299, 1386, 1593, 1661, 2399
MslI	CAYNNNNRTG	1 cut(s)	600
Msp20I	TGGCCA	2 cut(s)	1091, 2262
MspA1I	CMGCKG	1 cut(s)	579
MspI	CCGG	8 cut(s)	141, 222, 266, 281, 394, 1501, 2038, 2438
MunI	CAATTG	1 cut(s)	1756
MvaI	CCWGG	9 cut(s)	365, 851, 863, 1088, 1678, 1698, 1737, 2176, 2489
MvnI	CGCG	2 cut(s)	1255, 1290
NaeI	GCCGGC	1 cut(s)	395
NarI	GGCGCC	1 cut(s)	40
NciI	CCSGG	1 cut(s)	1501
NcoI	CCATGG	1 cut(s)	1462
NdeI	CATATG	1 cut(s)	601
NgoMIV	GCCGGC	1 cut(s)	393
NheI	GCTAGC	1 cut(s)	2492
NlaIII	CATG	9 cut(s)	595, 599, 627, 680, 884, 1112, 1454, 1466, 2450
NmeAIII	GCCGAG	1 cut(s)	1105
NmuCI	GTSAC	5 cut(s)	1029, 1082, 1898, 2090, 2294
NruI	TCGCGA	1 cut(s)	1290
NsiI	ATGCAT	3 cut(s)	597, 601, 1216
NspI	RCATGY	2 cut(s)	599, 2450
PaeI	GCATGC	1 cut(s)	599
PaeR7I	CTCGAG	2 cut(s)	618, 1782
PagI	TCATGA	2 cut(s)	880, 1450
PasI	CCCWGGG	1 cut(s)	2175
PciI	ACATGT	1 cut(s)	2446
PciSI	GCTCTTC	1 cut(s)	549
PdiI	GCCGGC	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	104, 457, 652, 692
Pfl23II	CGTACG	1 cut(s)	2284
PflFI	GACNNNGTC	1 cut(s)	851
PfoI	TCCNGGA	1 cut(s)	1499
PkrI	GCNGC	6 cut(s)	44, 47, 2127, 2270, 2273, 2475
PleI	GAGTC	6 cut(s)	317, 362, 1284, 1905, 2010, 2178
PluTI	GGCGCC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	1691
PmlI	CACGTG	1 cut(s)	1691
PpsI	GAGTC	6 cut(s)	317, 362, 1284, 1905, 2010, 2178
Ppu21I	YACGTR	3 cut(s)	1553, 1691, 2288
PpuMI	RGGWCCY	2 cut(s)	498, 1232
PscI	ACATGT	1 cut(s)	2446
PshAI	GACNNNNGTC	1 cut(s)	2449
PshBI	ATTAAT	2 cut(s)	489, 1386
Psp5II	RGGWCCY	2 cut(s)	498, 1232
Psp6I	CCWGG	9 cut(s)	363, 849, 861, 1086, 1676, 1696, 1735, 2174, 2487
PspCI	CACGTG	1 cut(s)	1691
PspFI	CCCAGC	1 cut(s)	1796
PspGI	CCWGG	9 cut(s)	363, 849, 861, 1086, 1676, 1696, 1735, 2174, 2487
PspLI	CGTACG	1 cut(s)	2284
PspPI	GGNCC	6 cut(s)	361, 498, 853, 1232, 1694, 1727
PspPPI	RGGWCCY	2 cut(s)	498, 1232
PstI	CTGCAG	1 cut(s)	2032
PstNI	CAGNNNCTG	2 cut(s)	772, 1174
PsuI	RGATCY	3 cut(s)	858, 1703, 2335
PsyI	GACNNNGTC	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	579
RruI	TCGCGA	1 cut(s)	1290
RsaI	GTAC	5 cut(s)	248, 1063, 1471, 1551, 2286
RsaNI	GTAC	5 cut(s)	247, 1062, 1470, 1550, 2285
RseI	CAYNNNNRTG	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	9 cut(s)	489, 1136, 1187, 1220, 1299, 1386, 1593, 1661, 2399
SatI	GCNGC	6 cut(s)	43, 46, 2126, 2269, 2272, 2474
Sau96I	GGNCC	6 cut(s)	361, 498, 853, 1232, 1694, 1727
SchI	GAGTC	6 cut(s)	318, 362, 1285, 1906, 2011, 2179
SduI	GDGCHC	7 cut(s)	382, 1042, 1687, 1776, 1783, 2045, 2306
SexAI	ACCWGGT	1 cut(s)	849
SfaNI	GCATC	7 cut(s)	405, 1161, 1223, 1323, 1597, 2194, 2223
SfcI	CTRYAG	4 cut(s)	2028, 2161, 2196, 2247
SfoI	GGCGCC	1 cut(s)	41
Sfr274I	CTCGAG	2 cut(s)	618, 1782
SinI	GGWCC	4 cut(s)	498, 853, 1232, 1694
SlaI	CTCGAG	2 cut(s)	618, 1782
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	4 cut(s)	347, 618, 756, 1782
SmoI	CTYRAG	4 cut(s)	347, 618, 756, 1782
SnaBI	TACGTA	1 cut(s)	2288
SphI	GCATGC	1 cut(s)	599
SsiI	CCGC	9 cut(s)	43, 46, 1273, 1326, 1459, 1894, 1924, 2125, 2269
SspDI	GGCGCC	1 cut(s)	39
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	4 cut(s)	260, 2006, 2442, 2493
StyI	CCWWGG	3 cut(s)	1462, 1919, 2076
TaaI	ACNGT	3 cut(s)	1029, 1970, 2165
TaiI	ACGT	5 cut(s)	948, 1555, 1693, 1891, 2290
TaqI	TCGA	6 cut(s)	16, 307, 619, 1117, 1783, 1936
TauI	GCSGC	4 cut(s)	45, 48, 2128, 2271
TfiI	GAWTC	4 cut(s)	104, 457, 652, 692
Tru1I	TTAA	9 cut(s)	489, 1136, 1187, 1220, 1299, 1386, 1593, 1661, 2399
Tru9I	TTAA	9 cut(s)	489, 1136, 1187, 1220, 1299, 1386, 1593, 1661, 2399
TscAI	CASTG	3 cut(s)	972, 1107, 1781
TseFI	GTSAC	5 cut(s)	1029, 1082, 1898, 2090, 2294
TseI	GCWGC	2 cut(s)	2271, 2473
Tsp45I	GTSAC	5 cut(s)	1029, 1082, 1898, 2090, 2294
TspDTI	ATGAA	4 cut(s)	580, 1110, 1580, 2435
TspGWI	ACGGA	2 cut(s)	234, 2346
TspRI	CASTG	3 cut(s)	972, 1107, 1781
Tth111I	GACNNNGTC	1 cut(s)	851
VneI	GTGCAC	1 cut(s)	1038
VpaK11BI	GGWCC	4 cut(s)	498, 853, 1232, 1694
VspI	ATTAAT	2 cut(s)	489, 1386
XagI	CCTNNNNNAGG	1 cut(s)	1740
XapI	RAATTY	4 cut(s)	515, 1020, 1589, 1670
XbaI	TCTAGA	1 cut(s)	2005
XceI	RCATGY	2 cut(s)	599, 2450
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1099, 2102, 2336
XhoI	CTCGAG	2 cut(s)	618, 1782
XspI	CTAG	4 cut(s)	260, 2006, 2442, 2493
ZraI	GACGTC	1 cut(s)	946
Zsp2I	ATGCAT	3 cut(s)	597, 601, 1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.