Rw1G029040

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000846
Physical Location & Seq
Reverse (-)
56699264 .. 56704099
4836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029040.1

Sequence Viewer

Length: 1002 bp
ATGCTACTGGTAGCTCGACAATTCAGCCATTGCTGGTGGCGCCGCCGCCGTCCACATATCGGCCTCTCCCACACTCCACTCACCAACCTCAACTTCCACTCCGAATCCGACGACTTCTTGCCGTGGCTGGAGCGCAAGTCCGGCACCGAAATCTCTTCCGCGCTTTCGATAGGGAAATCCACTCTCGGAACGGCTCTCTTTGCTTCCAAGACCATAAGAGCCGGAGACTGCATATTGAAAGTTCCGTACAGCGTGCAACTAGCTCCGGATAATCTTGCTCCGGAATTGAGAGCTCTGTTAGGTGATCGAGTCGGTGATGTTGCGAAGGTCGCCATTGTCATTTTGCTTGAGCAGAAAATGGGCCAGGACTCTGAATGGGCTCCTTACATCAGCCGGCTTCCTCGCCCCGAGGAGATGCATAGCACAATATTTTGGAGCGAAGATGAGTTGGAGATGATTTGTCGAAGCTCTCTGTATCAGGAGACAATTAATCAAAGATCCCTTGTTGAAAAGGAATTTTTGGCAGTTAGGAGAGCTCTTGAGCACTTTCCTGAGATGTTCCAAAGTATCAGCTGTAAGGATTTCATGCATGCATATGCTTTAGTTACTTCTCGAGCATGGGGAAGCAGAAAGGGTTATTCCCTGATTCCATTTGCAGATTTTTTGAACCATGATGGGACTTCAGAATCAGTTGTGCTGAGTGATGATGACAAACATTTCTCAGAGGTGATTGCTGATCGTAATTATGCTCAAGGTGAACAGGTGCTGATAAGATATGGCAAATTTTCAAACGCTACCCTGCTGTTGGACTTTGGGTTTACACTTCCATACAACATTCACGACCAGGTCCAGATCCAGGTAAACATACCTCATCATGATATTCTTCGTGATTTGAAGTTGGAACTTTTGAAGAGACATCATAGACCAATCAACAATGACGTCAATGGTTTCAACTCTTCAGTGGATTGTTTCACAATCAAGTTGGGAAGTGAAATCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

333

Amino Acids

38.13

Weight (kDa)

6.16

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 942
AccB1I GGYRCC 2 cut(s) 39, 143
AccII CGCG 1 cut(s) 161
AccIII TCCGGA 2 cut(s) 265, 280
AciI CCGC 3 cut(s) 43, 46, 159
AclWI GGATC 2 cut(s) 492, 847
AcsI RAATTY 2 cut(s) 515, 782
AcuI CTGAAG 2 cut(s) 666, 942
AcyI GRCGYC 2 cut(s) 40, 939
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 3 cut(s) 59, 805, 856
AgsI TTSAA 7 cut(s) 238, 509, 667, 789, 895, 910, 952
AjnI CCWGG 3 cut(s) 363, 843, 855
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 6 cut(s) 14, 263, 293, 468, 536, 573
AluI AGCT 6 cut(s) 14, 263, 293, 468, 536, 573
Alw21I GWGCWC 3 cut(s) 295, 538, 546
Alw26I GTCTC 3 cut(s) 219, 476, 907
AlwI GGATC 2 cut(s) 492, 847
AlwNI CAGNNNCTG 1 cut(s) 766
Ama87I CYCGRG 2 cut(s) 407, 612
Aor13HI TCCGGA 2 cut(s) 265, 280
AoxI GGCC 2 cut(s) 61, 361
ApoI RAATTY 2 cut(s) 515, 782
AseI ATTAAT 1 cut(s) 489
AspLEI GCGC 3 cut(s) 42, 135, 163
AspS9I GGNCC 2 cut(s) 361, 847
AsuHPI GGTGA 5 cut(s) 73, 314, 326, 739, 767
AvaI CYCGRG 2 cut(s) 407, 612
AvaII GGWCC 1 cut(s) 847
BanI GGYRCC 2 cut(s) 39, 143
BanII GRGCYC 3 cut(s) 295, 382, 538
Bbv12I GWGCWC 3 cut(s) 295, 538, 546
BccI CCATC 1 cut(s) 668
BceAI ACGGC 3 cut(s) 33, 106, 207
BciT130I CCWGG 3 cut(s) 365, 845, 857
BcoDI GTCTC 3 cut(s) 219, 476, 907
BfaI CTAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 43
BisI GCNGC 2 cut(s) 43, 46
BlsI GCNGC 2 cut(s) 44, 47
Bme1390I CCNGG 3 cut(s) 365, 845, 857
Bme18I GGWCC 1 cut(s) 847
BmeT110I CYCGRG 2 cut(s) 407, 612
BmgT120I GGNCC 2 cut(s) 361, 847
BmiI GGNNCC 3 cut(s) 41, 145, 381
BmrFI CCNGG 3 cut(s) 365, 845, 857
BmsI GCATC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 149
BpuEI CTTGAG 3 cut(s) 368, 560, 735
BsaHI GRCGYC 2 cut(s) 40, 939
BsaJI CCNNGG 2 cut(s) 122, 408
BsaWI WCCGGW 2 cut(s) 265, 280
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 122, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 805, 856
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 28
BseAI TCCGGA 2 cut(s) 265, 280
BseBI CCWGG 3 cut(s) 365, 845, 857
BseDI CCNNGG 2 cut(s) 122, 408
BseLI CCNNNNNNNGG 3 cut(s) 59, 805, 856
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 3 cut(s) 543, 689, 735
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 2 cut(s) 63, 363
BshNI GGYRCC 2 cut(s) 39, 143
BsiHKAI GWGCWC 3 cut(s) 295, 538, 546
BsiHKCI CYCGRG 2 cut(s) 407, 612
BsiSI CCGG 5 cut(s) 141, 222, 266, 281, 394
BslFI GGGAC 1 cut(s) 691
BslI CCNNNNNNNGG 3 cut(s) 59, 805, 856
BsmAI GTCTC 3 cut(s) 219, 476, 907
BsmFI GGGAC 1 cut(s) 691
BsnI GGCC 2 cut(s) 63, 363
BsoBI CYCGRG 2 cut(s) 407, 612
Bsp1286I GDGCHC 4 cut(s) 295, 382, 538, 546
Bsp13I TCCGGA 2 cut(s) 265, 280
Bsp143I GATC 4 cut(s) 304, 497, 736, 852
BspACI CCGC 3 cut(s) 43, 46, 159
BspANI GGCC 2 cut(s) 63, 363
BspCNI CTCAG 3 cut(s) 544, 690, 734
BspEI TCCGGA 2 cut(s) 265, 280
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 41, 145, 381
BspPI GGATC 2 cut(s) 492, 847
BspT107I GGYRCC 2 cut(s) 39, 143
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 122, 408
BssMI GATC 4 cut(s) 304, 497, 736, 852
BssNI GRCGYC 2 cut(s) 40, 939
Bst2UI CCWGG 3 cut(s) 365, 845, 857
Bst6I CTCTTC 3 cut(s) 160, 905, 961
BstACI GRCGYC 2 cut(s) 40, 939
BstC8I GCNNGC 3 cut(s) 254, 395, 591
BstDEI CTNAG 3 cut(s) 552, 698, 721
BstDSI CCRYGG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 3 cut(s) 42, 135, 163
BstKTI GATC 4 cut(s) 307, 500, 739, 855
BstMAI GTCTC 3 cut(s) 219, 476, 907
BstMBI GATC 4 cut(s) 304, 497, 736, 852
BstMWI GCNNNNNNNGC 4 cut(s) 39, 141, 200, 329
BstNI CCWGG 3 cut(s) 365, 845, 857
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 3 cut(s) 363, 843, 855
BstUI CGCG 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 497, 852
BstYI RGATCY 2 cut(s) 497, 852
BsuRI GGCC 2 cut(s) 63, 363
BtgI CCRYGG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 966
Cac8I GCNNGC 3 cut(s) 254, 395, 591
CaiI CAGNNNCTG 1 cut(s) 766
CciI TCATGA 1 cut(s) 874
CfoI GCGC 3 cut(s) 42, 135, 163
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 361, 847
CsiI ACCWGGT 1 cut(s) 843
Csp6I GTAC 1 cut(s) 247
CviAII CATG 5 cut(s) 586, 590, 618, 671, 875
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 3 cut(s) 552, 698, 721
DinI GGCGCC 1 cut(s) 41
DpnI GATC 4 cut(s) 306, 499, 738, 854
DpnII GATC 4 cut(s) 304, 497, 736, 852
Eam1104I CTCTTC 3 cut(s) 160, 905, 961
EarI CTCTTC 3 cut(s) 160, 905, 961
Ecl136II GAGCTC 2 cut(s) 293, 536
Eco24I GRGCYC 3 cut(s) 295, 382, 538
Eco47I GGWCC 1 cut(s) 847
Eco53kI GAGCTC 2 cut(s) 293, 536
Eco57I CTGAAG 2 cut(s) 666, 942
Eco88I CYCGRG 2 cut(s) 407, 612
EcoICRI GAGCTC 2 cut(s) 293, 536
EcoRII CCWGG 3 cut(s) 363, 843, 855
EcoT22I ATGCAT 3 cut(s) 420, 591, 595
EcoT38I GRGCYC 3 cut(s) 295, 382, 538
EgeI GGCGCC 1 cut(s) 41
EheI GGCGCC 1 cut(s) 41
FaeI CATG 5 cut(s) 589, 593, 621, 674, 878
FaqI GGGAC 1 cut(s) 691
FatI CATG 5 cut(s) 585, 589, 617, 670, 874
FauNDI CATATG 1 cut(s) 595
Fnu4HI GCNGC 2 cut(s) 43, 46
FriOI GRGCYC 3 cut(s) 295, 382, 538
Fsp4HI GCNGC 2 cut(s) 43, 46
FspBI CTAG 1 cut(s) 260
GlaI GCGC 3 cut(s) 41, 134, 162
GluI GCNGC 2 cut(s) 43, 46
GsuI CTGGAG 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 2 cut(s) 63, 363
HapII CCGG 5 cut(s) 141, 222, 266, 281, 394
HhaI GCGC 3 cut(s) 42, 135, 163
Hin1I GRCGYC 2 cut(s) 40, 939
Hin1II CATG 5 cut(s) 589, 593, 621, 674, 878
Hin6I GCGC 3 cut(s) 40, 133, 161
HinP1I GCGC 3 cut(s) 40, 133, 161
HinfI GANTC 5 cut(s) 104, 309, 368, 646, 686
HpaII CCGG 5 cut(s) 141, 222, 266, 281, 394
HphI GGTGA 5 cut(s) 73, 314, 326, 739, 767
Hpy166II GTNNAC 4 cut(s) 53, 758, 819, 862
Hpy188I TCNGA 6 cut(s) 103, 109, 188, 373, 685, 724
Hpy8I GTNNAC 4 cut(s) 53, 758, 819, 862
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 939
HpyCH4V TGCA 6 cut(s) 231, 256, 418, 589, 593, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 141, 200, 329
HpyF3I CTNAG 3 cut(s) 552, 698, 721
HpySE526I ACGT 1 cut(s) 939
Hsp92I GRCGYC 2 cut(s) 40, 939
Hsp92II CATG 5 cut(s) 589, 593, 621, 674, 878
HspAI GCGC 3 cut(s) 40, 133, 161
KasI GGCGCC 1 cut(s) 39
Kpn2I TCCGGA 2 cut(s) 265, 280
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Kzo9I GATC 4 cut(s) 304, 497, 736, 852
LmnI GCTCC 5 cut(s) 130, 268, 283, 385, 435
LweI GCATC 1 cut(s) 405
MabI ACCWGGT 1 cut(s) 843
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 1 cut(s) 604
MalI GATC 4 cut(s) 306, 499, 738, 854
MboI GATC 4 cut(s) 304, 497, 736, 852
MboII GAAGA 5 cut(s) 147, 452, 875, 922, 948
MflI RGATCY 2 cut(s) 497, 852
MhlI GDGCHC 4 cut(s) 295, 382, 538, 546
MluCI AATT 6 cut(s) 20, 284, 486, 515, 742, 782
Mly113I GGCGCC 1 cut(s) 40
MlyI GAGTC 2 cut(s) 318, 362
MmeI TCCRAC 4 cut(s) 132, 429, 786, 879
MnlI CCTC 6 cut(s) 74, 98, 403, 411, 718, 879
Mph1103I ATGCAT 3 cut(s) 420, 591, 595
MroI TCCGGA 2 cut(s) 265, 280
MroNI GCCGGC 1 cut(s) 393
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 573
MspI CCGG 5 cut(s) 141, 222, 266, 281, 394
MspR9I CCNGG 3 cut(s) 365, 845, 857
MvaI CCWGG 3 cut(s) 365, 845, 857
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 4 cut(s) 39, 141, 200, 329
NaeI GCCGGC 1 cut(s) 395
NarI GGCGCC 1 cut(s) 40
NdeI CATATG 1 cut(s) 595
NdeII GATC 4 cut(s) 304, 497, 736, 852
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 5 cut(s) 589, 593, 621, 674, 878
NlaIV GGNNCC 3 cut(s) 41, 145, 381
NsiI ATGCAT 3 cut(s) 420, 591, 595
NspI RCATGY 1 cut(s) 593
PaeI GCATGC 1 cut(s) 593
PaeR7I CTCGAG 1 cut(s) 612
PagI TCATGA 1 cut(s) 874
PdiI GCCGGC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 104, 646, 686
PflFI GACNNNGTC 1 cut(s) 845
PkrI GCNGC 2 cut(s) 44, 47
PleI GAGTC 2 cut(s) 317, 362
PluTI GGCGCC 1 cut(s) 43
PpsI GAGTC 2 cut(s) 317, 362
PshBI ATTAAT 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 295, 538
Psp6I CCWGG 3 cut(s) 363, 843, 855
PspGI CCWGG 3 cut(s) 363, 843, 855
PspN4I GGNNCC 3 cut(s) 41, 145, 381
PspPI GGNCC 2 cut(s) 361, 847
PstNI CAGNNNCTG 1 cut(s) 766
PsuI RGATCY 2 cut(s) 497, 852
PsyI GACNNNGTC 1 cut(s) 845
PvuII CAGCTG 1 cut(s) 573
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 594
SacI GAGCTC 2 cut(s) 295, 538
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 2 cut(s) 43, 46
Sau3AI GATC 4 cut(s) 304, 497, 736, 852
Sau96I GGNCC 2 cut(s) 361, 847
SchI GAGTC 2 cut(s) 318, 362
ScrFI CCNGG 3 cut(s) 365, 845, 857
SduI GDGCHC 4 cut(s) 295, 382, 538, 546
SexAI ACCWGGT 1 cut(s) 843
SfaNI GCATC 1 cut(s) 405
SfoI GGCGCC 1 cut(s) 41
Sfr274I CTCGAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 847
SlaI CTCGAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 4 cut(s) 347, 539, 612, 750
SmoI CTYRAG 4 cut(s) 347, 539, 612, 750
SphI GCATGC 1 cut(s) 593
Sse9I AATT 6 cut(s) 20, 284, 486, 515, 742, 782
SsiI CCGC 3 cut(s) 43, 46, 159
SspDI GGCGCC 1 cut(s) 39
SspI AATATT 1 cut(s) 429
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 2 cut(s) 295, 538
StyD4I CCNGG 3 cut(s) 363, 843, 855
TaiI ACGT 1 cut(s) 942
TaqI TCGA 5 cut(s) 16, 167, 307, 463, 613
TasI AATT 6 cut(s) 20, 284, 486, 515, 742, 782
TauI GCSGC 2 cut(s) 45, 48
TfiI GAWTC 3 cut(s) 104, 646, 686
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 966
TspDTI ATGAA 1 cut(s) 574
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 966
Tth111I GACNNNGTC 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 847
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 2 cut(s) 515, 782
XceI RCATGY 1 cut(s) 593
XhoI CTCGAG 1 cut(s) 612
XspI CTAG 1 cut(s) 260
ZraI GACGTC 1 cut(s) 940
Zsp2I ATGCAT 3 cut(s) 420, 591, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.