FvH4_7g20910

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003355
Physical Location & Seq
Reverse (-)
16896419 .. 16904456
8038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20910.t3

Sequence Viewer

Length: 1404 bp
ATGGAGTTTCTCTTGACAATGTGTCTAGTCTCTCTTTTCTATGGTTTTTGCTGCCTTTTAAAGTCATTTCTCCAAAGGAGACATCAGTCCTGCTATTTACTGGCCTATGAGTGCTACAAACCCACAGAGGACATGAAGCTCCGAACCGACTCATGTGCGAAAATCGTCATGAGAAACAAGAATCTGGGGCTGGAAGAGTTCAGGTTTCTCTTGAAAACCATTGTCAATTCCGGCATTGGTGAGGAAACTTCTTGCCCAAGGAACATCCTCCAAGGCCGAGAAGAAAAGCCAAACCTAGCAGATTCACTCTCTGAGATGGATGAAATCATCTTCAACACACTTGACAATCTTTTCACCCGGTACCCTTCAGTCTCCCCATCACAAATCGACATCCTCGTAGTCAATGTCTCTATGTTCTCCCCTTCACCCTCCCTAACATCTCGAATAGTGAACCGTTACAAGATGAGGGAGAACATCAAGACATTCAACCTTTCCGGAATGGGCTGCAGCGCAAGCCTGGTGGCCGTTGATGTTGTCCAGGGCTTGTTCAAGTCATACAAAGACTCATACGCCCTTGTTGTGAGCACAGAGTCGATGGCTCCTAACTGGTATTGCGGCAAAGAAAAATCCATGATGCTCACCAACTGTTTGTTTCGCTCGGGAGGCTGTTCGATGCTGTTCACCAATAGAAGATACCATAGGCACCAAGCTATCTTGAAATTGAAGACACTGGTAAGAACACATATCGGCTCCAGTGATGATGCTTACAATTGTTGCATACAGCTAGAAGATGATAGTGGTTACCCAGGTTTTCGTCTTACCAAATACCTCACAAAAGCAGCAGCTCTTTCTCTCACAATGAACCTACAAGTCCTGGTGCCAAAAGTACTTCCACTAAGGGAAATACTCCGGTACGTGCTGGAGTCTTGGCTGCGGAAGAACAGGGGGAAAAAGAGCCAAAAGTTAGAAGCAGTAGGAGCTGGTTTGAATATGAAGGCTGGAATAGAGCACTTCTGTATCCACCCTGGTGGAAGAGCAATCATAGATGGGATTGGCAAGAGCTTAGCATTAGAAGAGTATGATCTTGAGCCATCTAGAATGGCGCTTTTCCGATTTGGTAACACATCAGCTGCTGGGTTTTGGTATGCTTTAGGATACATGGAAGCCAAAAAGAGGCTTAAGAAGGGTGATAGGATTCTTATGAGTGGATTTGGAGCAGGTTTTAAGTGCAACAATATTGTTTGGGAAGTACTGAGGGACTTGGATGATGCTAATGTTTGGAAAGACTGCATAGATAGTTATCCTCCACATACTATAGACAACCCTTTCATGGAGAAGTTTAGTTGGCTCAATGATGATTACCTCAGCTTTGTTAGGATTGATTTCAGCAAAATATTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

468

Amino Acids

53.18

Weight (kDa)

8.85

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 2 - 148 8.8e-56 FAE1/Type III polyketide synthase-like protein
FAE1_CUT1_RppA PF08392 149 - 226 4.5e-20 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 247 - 329 1.3e-12 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 251 - 325 6.2e-10 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1208
Acc65I GGTACC 1 cut(s) 360
AccB1I GGYRCC 3 cut(s) 360, 702, 877
AccIII TCCGGA 1 cut(s) 494
AciI CCGC 2 cut(s) 615, 934
AcoI YGGCCR 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 4 cut(s) 362, 888, 914, 1251
AfiI CCNNNNNNNGG 2 cut(s) 1173, 1330
AflII CTTAAG 1 cut(s) 1178
AgsI TTSAA 7 cut(s) 214, 334, 487, 550, 718, 724, 988
AhdI GACNNNNNGTC 1 cut(s) 21
AjnI CCWGG 5 cut(s) 516, 537, 805, 873, 1024
AleI CACNNNNGTG 1 cut(s) 1026
AluBI AGCT 8 cut(s) 139, 710, 784, 845, 980, 1062, 1130, 1368
AluI AGCT 8 cut(s) 139, 710, 784, 845, 980, 1062, 1130, 1368
Alw21I GWGCWC 2 cut(s) 587, 1011
Alw26I GTCTC 4 cut(s) 34, 73, 376, 412
AlwNI CAGNNNCTG 1 cut(s) 1133
Ama87I CYCGRG 1 cut(s) 658
Aor13HI TCCGGA 1 cut(s) 494
AoxI GGCC 3 cut(s) 102, 274, 522
ApeKI GCWGC 7 cut(s) 51, 504, 507, 839, 842, 931, 1130
Asp718I GGTACC 1 cut(s) 360
AspLEI GCGC 2 cut(s) 512, 1105
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 6 cut(s) 251, 346, 417, 631, 673, 1199
AvaI CYCGRG 1 cut(s) 658
BaeI ACNNNNGTAYC 2 cut(s) 1000, 1033
BanI GGYRCC 3 cut(s) 360, 702, 877
BbsI GAAGAC 1 cut(s) 731
Bbv12I GWGCWC 2 cut(s) 587, 1011
BbvCI CCTCAGC 1 cut(s) 1364
BbvI GCAGC 7 cut(s) 38, 491, 519, 851, 854, 918, 1117
BccI CCATC 5 cut(s) 310, 385, 589, 1040, 1099
BceAI ACGGC 1 cut(s) 509
BcgI CGANNNNNNTGC 3 cut(s) 137, 171, 1378
BciT130I CCWGG 5 cut(s) 518, 539, 807, 875, 1026
BciVI GTATCC 2 cut(s) 1028, 1148
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 4 cut(s) 34, 73, 376, 412
BfaI CTAG 4 cut(s) 26, 296, 785, 1095
BfmI CTRYAG 2 cut(s) 505, 1314
BfoI RGCGCY 1 cut(s) 1106
BfrI CTTAAG 1 cut(s) 1178
BfuAI ACCTGC 1 cut(s) 1208
BfuI GTATCC 2 cut(s) 1028, 1148
BisI GCNGC 8 cut(s) 52, 505, 508, 616, 840, 843, 932, 1131
BlpI GCTNAGC 1 cut(s) 1063
BlsI GCNGC 8 cut(s) 53, 506, 509, 617, 841, 844, 933, 1132
BmcAI AGTACT 2 cut(s) 888, 1251
Bme1390I CCNGG 6 cut(s) 358, 518, 539, 807, 875, 1026
BmeRI GACNNNNNGTC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 658
BmiI GGNNCC 5 cut(s) 362, 600, 704, 751, 879
BmrFI CCNGG 6 cut(s) 358, 518, 539, 807, 875, 1026
BmsI GCATC 4 cut(s) 624, 663, 751, 1258
BoxI GACNNNNGTC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 731
BpmI CTGGAG 2 cut(s) 736, 941
Bpu10I CCTNAGC 1 cut(s) 1364
Bpu1102I GCTNAGC 1 cut(s) 1063
BpuEI CTTGAG 1 cut(s) 1106
BpuMI CCSGG 1 cut(s) 358
BsaAI YACGTR 1 cut(s) 916
BsaBI GATNNNNATC 1 cut(s) 1299
BsaJI CCNNGG 5 cut(s) 257, 271, 538, 805, 1024
BsaWI WCCGGW 2 cut(s) 494, 909
Bsc4I CCNNNNNNNGG 2 cut(s) 1173, 1330
Bse1I ACTGG 4 cut(s) 105, 611, 735, 753
Bse8I GATNNNNATC 1 cut(s) 1299
BseAI TCCGGA 1 cut(s) 494
BseBI CCWGG 5 cut(s) 518, 539, 807, 875, 1026
BseDI CCNNGG 5 cut(s) 257, 271, 538, 805, 1024
BseGI GGATG 4 cut(s) 264, 325, 390, 1270
BseJI GATNNNNATC 1 cut(s) 1299
BseLI CCNNNNNNNGG 2 cut(s) 1173, 1330
BseMII CTCAG 3 cut(s) 303, 1244, 1378
BseNI ACTGG 4 cut(s) 105, 611, 735, 753
BseXI GCAGC 7 cut(s) 38, 491, 519, 851, 854, 918, 1117
BseYI CCCAGC 1 cut(s) 1133
BshFI GGCC 3 cut(s) 104, 276, 524
BshNI GGYRCC 3 cut(s) 360, 702, 877
BsiHKAI GWGCWC 2 cut(s) 587, 1011
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 4 cut(s) 231, 358, 495, 910
BslFI GGGAC 1 cut(s) 1271
BslI CCNNNNNNNGG 2 cut(s) 1173, 1330
BsmAI GTCTC 4 cut(s) 34, 73, 376, 412
BsmFI GGGAC 1 cut(s) 1271
BsnI GGCC 3 cut(s) 104, 276, 524
BsoBI CYCGRG 1 cut(s) 658
Bsp1286I GDGCHC 2 cut(s) 587, 1011
Bsp13I TCCGGA 1 cut(s) 494
Bsp143I GATC 1 cut(s) 1081
Bsp1720I GCTNAGC 1 cut(s) 1063
BspACI CCGC 2 cut(s) 615, 934
BspANI GGCC 3 cut(s) 104, 276, 524
BspCNI CTCAG 3 cut(s) 304, 1245, 1377
BspEI TCCGGA 1 cut(s) 494
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 5 cut(s) 362, 600, 704, 751, 879
BspMAI CTGCAG 1 cut(s) 509
BspMI ACCTGC 1 cut(s) 1208
BspQI GCTCTTC 1 cut(s) 1027
BspT107I GGYRCC 3 cut(s) 360, 702, 877
BspTI CTTAAG 1 cut(s) 1178
BsrI ACTGG 4 cut(s) 105, 611, 735, 753
BssECI CCNNGG 5 cut(s) 257, 271, 538, 805, 1024
BssMI GATC 1 cut(s) 1081
BssT1I CCWWGG 2 cut(s) 257, 271
Bst2UI CCWGG 5 cut(s) 518, 539, 807, 875, 1026
Bst4CI ACNGT 2 cut(s) 455, 647
Bst6I CTCTTC 3 cut(s) 189, 1027, 1068
BstAFI CTTAAG 1 cut(s) 1178
BstBAI YACGTR 1 cut(s) 916
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 5 cut(s) 312, 896, 1063, 1253, 1364
BstEII GGTNACC 1 cut(s) 800
BstF5I GGATG 4 cut(s) 264, 325, 390, 1270
BstH2I RGCGCY 1 cut(s) 1106
BstHHI GCGC 2 cut(s) 512, 1105
BstKTI GATC 1 cut(s) 1084
BstMAI GTCTC 4 cut(s) 34, 73, 376, 412
BstMBI GATC 1 cut(s) 1081
BstMWI GCNNNNNNNGC 3 cut(s) 513, 663, 977
BstNI CCWGG 5 cut(s) 518, 539, 807, 875, 1026
BstPAI GACNNNNGTC 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 800
BstSCI CCNGG 6 cut(s) 356, 516, 537, 805, 873, 1024
BstSFI CTRYAG 2 cut(s) 505, 1314
BstV1I GCAGC 7 cut(s) 38, 491, 519, 851, 854, 918, 1117
BstV2I GAAGAC 1 cut(s) 731
BstXI CCANNNNNNTGG 1 cut(s) 1028
BsuI GTATCC 2 cut(s) 1028, 1148
BsuRI GGCC 3 cut(s) 104, 276, 524
BtsCI GGATG 4 cut(s) 264, 325, 390, 1270
BtsIMutI CAGTG 2 cut(s) 728, 760
BveI ACCTGC 1 cut(s) 1208
Cac8I GCNNGC 1 cut(s) 514
CaiI CAGNNNCTG 1 cut(s) 1133
CciI TCATGA 1 cut(s) 168
CfoI GCGC 2 cut(s) 512, 1105
Csp6I GTAC 4 cut(s) 361, 887, 913, 1250
CspCI CAANNNNNGTGG 2 cut(s) 501, 536
CviAII CATG 6 cut(s) 133, 153, 169, 631, 1159, 1330
CviQI GTAC 4 cut(s) 361, 887, 913, 1250
DdeI CTNAG 5 cut(s) 312, 896, 1063, 1253, 1364
DpnI GATC 1 cut(s) 1083
DpnII GATC 1 cut(s) 1081
DraI TTTAAA 1 cut(s) 60
DriI GACNNNNNGTC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 522
Eam1104I CTCTTC 3 cut(s) 189, 1027, 1068
Eam1105I GACNNNNNGTC 1 cut(s) 21
EarI CTCTTC 3 cut(s) 189, 1027, 1068
Eco130I CCWWGG 2 cut(s) 257, 271
Eco57I CTGAAG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 658
Eco91I GGTNACC 1 cut(s) 800
EcoO65I GGTNACC 1 cut(s) 800
EcoRII CCWGG 5 cut(s) 516, 537, 805, 873, 1024
EcoT14I CCWWGG 2 cut(s) 257, 271
ErhI CCWWGG 2 cut(s) 257, 271
FaeI CATG 6 cut(s) 136, 156, 172, 634, 1162, 1333
FaqI GGGAC 1 cut(s) 1271
FatI CATG 6 cut(s) 132, 152, 168, 630, 1158, 1329
Fnu4HI GCNGC 8 cut(s) 52, 505, 508, 616, 840, 843, 932, 1131
FokI GGATG 4 cut(s) 251, 332, 377, 1277
Fsp4HI GCNGC 8 cut(s) 52, 505, 508, 616, 840, 843, 932, 1131
FspBI CTAG 4 cut(s) 26, 296, 785, 1095
GlaI GCGC 2 cut(s) 511, 1104
GluI GCNGC 8 cut(s) 52, 505, 508, 616, 840, 843, 932, 1131
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 2 cut(s) 736, 941
HaeII RGCGCY 1 cut(s) 1106
HaeIII GGCC 3 cut(s) 104, 276, 524
HapII CCGG 4 cut(s) 231, 358, 495, 910
HhaI GCGC 2 cut(s) 512, 1105
Hin1II CATG 6 cut(s) 136, 156, 172, 634, 1162, 1333
Hin6I GCGC 2 cut(s) 510, 1103
HinP1I GCGC 2 cut(s) 510, 1103
HinfI GANTC 7 cut(s) 149, 181, 302, 563, 590, 923, 1195
HpaII CCGG 4 cut(s) 231, 358, 495, 910
HphI GGTGA 6 cut(s) 251, 346, 417, 631, 673, 1199
Hpy166II GTNNAC 2 cut(s) 451, 681
Hpy188I TCNGA 3 cut(s) 143, 313, 1112
Hpy8I GTNNAC 2 cut(s) 451, 681
HpyAV CCTTC 4 cut(s) 375, 432, 988, 1177
HpyCH4III ACNGT 2 cut(s) 455, 647
HpyCH4IV ACGT 1 cut(s) 915
HpyCH4V TGCA 4 cut(s) 507, 777, 1230, 1290
HpyF10VI GCNNNNNNNGC 3 cut(s) 513, 663, 977
HpyF3I CTNAG 5 cut(s) 312, 896, 1063, 1253, 1364
HpySE526I ACGT 1 cut(s) 915
Hsp92II CATG 6 cut(s) 136, 156, 172, 634, 1162, 1333
HspAI GCGC 2 cut(s) 510, 1103
Kpn2I TCCGGA 1 cut(s) 494
KpnI GGTACC 1 cut(s) 364
Kzo9I GATC 1 cut(s) 1081
LguI GCTCTTC 1 cut(s) 1027
LmnI GCTCC 5 cut(s) 144, 604, 755, 977, 1214
Lsp1109I GCAGC 7 cut(s) 38, 491, 519, 851, 854, 918, 1117
LweI GCATC 4 cut(s) 624, 663, 751, 1258
MaeI CTAG 4 cut(s) 26, 296, 785, 1095
MaeII ACGT 1 cut(s) 915
MaeIII GTNAC 3 cut(s) 455, 800, 1118
MalI GATC 1 cut(s) 1083
MboI GATC 1 cut(s) 1081
MboII GAAGA 9 cut(s) 206, 293, 322, 702, 736, 800, 949, 1044, 1085
MfeI CAATTG 1 cut(s) 769
MhlI GDGCHC 2 cut(s) 587, 1011
MluCI AATT 3 cut(s) 226, 719, 769
MlyI GAGTC 4 cut(s) 143, 557, 599, 932
MroI TCCGGA 1 cut(s) 494
MseI TTAA 4 cut(s) 59, 1179, 1224, 1402
MslI CAYNNNNRTG 1 cut(s) 1026
MspA1I CMGCKG 1 cut(s) 1130
MspCI CTTAAG 1 cut(s) 1178
MspI CCGG 4 cut(s) 231, 358, 495, 910
MspR9I CCNGG 6 cut(s) 358, 518, 539, 807, 875, 1026
MunI CAATTG 1 cut(s) 769
MvaI CCWGG 5 cut(s) 518, 539, 807, 875, 1026
MwoI GCNNNNNNNGC 3 cut(s) 513, 663, 977
NciI CCSGG 1 cut(s) 358
NdeII GATC 1 cut(s) 1081
NlaIII CATG 6 cut(s) 136, 156, 172, 634, 1162, 1333
NlaIV GGNNCC 5 cut(s) 362, 600, 704, 751, 879
NmeAIII GCCGAG 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 1026
PagI TCATGA 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 1027
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PfeI GAWTC 3 cut(s) 181, 302, 1195
PkrI GCNGC 8 cut(s) 53, 506, 509, 617, 841, 844, 933, 1132
PleI GAGTC 4 cut(s) 143, 557, 598, 931
PpsI GAGTC 4 cut(s) 143, 557, 598, 931
Ppu21I YACGTR 1 cut(s) 916
PshAI GACNNNNGTC 1 cut(s) 85
Psp6I CCWGG 5 cut(s) 516, 537, 805, 873, 1024
PspEI GGTNACC 1 cut(s) 800
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 5 cut(s) 516, 537, 805, 873, 1024
PspN4I GGNNCC 5 cut(s) 362, 600, 704, 751, 879
PstI CTGCAG 1 cut(s) 509
PstNI CAGNNNCTG 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 4 cut(s) 362, 888, 914, 1251
RsaNI GTAC 4 cut(s) 361, 887, 913, 1250
RseI CAYNNNNRTG 1 cut(s) 1026
SapI GCTCTTC 1 cut(s) 1027
SaqAI TTAA 4 cut(s) 59, 1179, 1224, 1402
SatI GCNGC 8 cut(s) 52, 505, 508, 616, 840, 843, 932, 1131
Sau3AI GATC 1 cut(s) 1081
ScaI AGTACT 2 cut(s) 888, 1251
SchI GAGTC 4 cut(s) 143, 557, 599, 932
ScrFI CCNGG 6 cut(s) 358, 518, 539, 807, 875, 1026
SduI GDGCHC 2 cut(s) 587, 1011
SfaNI GCATC 4 cut(s) 624, 663, 751, 1258
SfcI CTRYAG 2 cut(s) 505, 1314
SmiMI CAYNNNNRTG 1 cut(s) 1026
SmlI CTYRAG 2 cut(s) 1085, 1178
SmoI CTYRAG 2 cut(s) 1085, 1178
Sse9I AATT 3 cut(s) 226, 719, 769
SsiI CCGC 2 cut(s) 615, 934
SspI AATATT 2 cut(s) 1237, 1395
SspMI CTAG 4 cut(s) 26, 296, 785, 1095
StyD4I CCNGG 6 cut(s) 356, 516, 537, 805, 873, 1024
StyI CCWWGG 2 cut(s) 257, 271
TaaI ACNGT 2 cut(s) 455, 647
TaiI ACGT 1 cut(s) 918
TaqI TCGA 4 cut(s) 387, 442, 593, 671
TasI AATT 3 cut(s) 226, 719, 769
TatI WGTACW 2 cut(s) 886, 1249
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 3 cut(s) 181, 302, 1195
Tru1I TTAA 4 cut(s) 59, 1179, 1224, 1402
Tru9I TTAA 4 cut(s) 59, 1179, 1224, 1402
TscAI CASTG 2 cut(s) 735, 760
TseI GCWGC 7 cut(s) 51, 504, 507, 839, 842, 931, 1130
TspDTI ATGAA 5 cut(s) 149, 336, 875, 1007, 1318
TspRI CASTG 2 cut(s) 735, 760
Vha464I CTTAAG 1 cut(s) 1178
XbaI TCTAGA 1 cut(s) 1094
XspI CTAG 4 cut(s) 26, 296, 785, 1095
ZrmI AGTACT 2 cut(s) 888, 1251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.