RLG00000027460

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003355
Physical Location & Seq
Reverse (-)
11867369 .. 11868766
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027460

Sequence Viewer

Length: 1398 bp
ATGGAGTTGCTCTTGACAATGTGTCTAGTCTCTCTTTTCTTTGGTTTTTGCTGCCTCTTTAAGTCATTTCTCCAAAGGAGAGACCAGTGCTGCTATCTACTGGCCTATGAGTGCTACAAAGCCAAAGAGGACATGATGCTCCAAACCGACTCATGTGCGAAAATCGTCATGCAAAACAAGAATCTGGGGCTGGAAGATTTCAGGTTTCTCTTGAAAACCATTGTCAATTCAGGCATTGGTGAGGAAACATCCTGCCCAAGAAACATCCTCCAAGGCCGAGAAGCAACCCTAGCAGATTCACTCTCTGAGATGGATGAAACCATTTTCGATACACTTGACAAGCTTTTCGCCAGGTACCCTTCAGTCTCCCCATCACAAATCGACATTCTCGTGGTCAATGTCTCCATGTTCTCCCCTTCACCCTCCCTAACATCTCGAATAGTGAACCGTTACAAGATGAGGGAGGATATCAAGACATTCAACCTCTCCGGAATGGGCTGCAGCGCAAGCCTAGTGGCCGTTGATGTTGTCCAGGGCTTGTTCAAGTCATACAAAGACTCATACGCCCTTGTTGTGAGCACAGAGTCCATGGCTCCTTTCTGGTATAGCGGCAAAGAAAAATCCATGATGCTTACCAACTGTTTGTTTCGGTTAGGAGGCTGTTCGATGCTGTTCACCAATAGAAGATACCTTAAGCACCAAGCTATCTTGAAATTGAAGACTTTGGTAAGAACACATGTCGGCTCGAATGATGATGCTTACAATTCTTGCATACAGCTAGAAGATGATAGTGGTTACCTAGGTTTTCGGCTTACCAAATACCTCACAAAAGCAGCTGCTCTAGCTCTCACAATAAACCTAAAAGTTCTAGTGCCAAAAGTACTTCCACTAAGGGAAATACTCCGGTACCTGGTGGAGTCTAGGCTGCTGAAGCAAAGTGGTACTAAGAGCCAAAACCTAGAAGCAGTTGGAGTTGGTTTGAATATGAAGACCGGAATAGAGCACTTTTGTATCCACCCTGGTGGAAGAGCAATCATAGATGGGATTGGTAAGAGCTTAGCATTAAGCGAGTATGATCTCGAGCCATCCAGAATGGCGCTTTTCCGATTTGGTAACACATCAGCTGCTGGGTTTTGGTACGCTTTAGGATACATGGAAGCCAAAAAGAGGCTCACGAAGGGTGATAGGATTCTTATGAGTGGATTTGGAGCAGGTTTTAAGTGCAACAATATTGTTTGGGAAGTACTGATGGACTTGGATGATGCCAATGTTTGGAAAAGCTGCATAGATAGTTACCCTCCACATATTATAGCCAACCCTTTCATGGAAAAGTTTAGTTGGCTTAATGATGAATGCCTCAACTTTGCTAGGATTGATTTCAGCAAATTACTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

466

Amino Acids

52.39

Weight (kDa)

8.47

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 24 - 306 7.6e-110 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 332 - 414 2e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 336 - 412 7.4e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1202
Acc65I GGTACC 2 cut(s) 354, 906
AccB1I GGYRCC 2 cut(s) 354, 906
AccB7I CCANNNNNTGG 1 cut(s) 1272
AccIII TCCGGA 1 cut(s) 488
AciI CCGC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 516
AcuI CTGAAG 2 cut(s) 345, 950
AfaI GTAC 6 cut(s) 356, 882, 908, 943, 1139, 1245
AfiI CCNNNNNNNGG 4 cut(s) 910, 1167, 1272, 1324
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 6 cut(s) 214, 481, 544, 712, 718, 982
AhdI GACNNNNNGTC 1 cut(s) 21
AjnI CCWGG 4 cut(s) 350, 531, 909, 1018
AleI CACNNNNGTG 1 cut(s) 1020
AluBI AGCT 8 cut(s) 343, 704, 778, 836, 845, 1056, 1124, 1281
AluI AGCT 8 cut(s) 343, 704, 778, 836, 845, 1056, 1124, 1281
Alw21I GWGCWC 2 cut(s) 581, 1005
Alw26I GTCTC 4 cut(s) 34, 75, 370, 406
AlwNI CAGNNNCTG 1 cut(s) 1127
Ama87I CYCGRG 1 cut(s) 1079
Aor13HI TCCGGA 1 cut(s) 488
AoxI GGCC 3 cut(s) 102, 274, 516
ApeKI GCWGC 9 cut(s) 51, 90, 498, 501, 833, 836, 925, 1124, 1281
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp718I GGTACC 2 cut(s) 354, 906
AspA2I CCTAGG 1 cut(s) 799
AspLEI GCGC 2 cut(s) 506, 1099
AsuHPI GGTGA 4 cut(s) 251, 411, 667, 1193
AvaI CYCGRG 1 cut(s) 1079
AvrII CCTAGG 1 cut(s) 799
BaeI ACNNNNGTAYC 4 cut(s) 890, 923, 994, 1027
BanI GGYRCC 2 cut(s) 354, 906
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 725, 995
Bbv12I GWGCWC 2 cut(s) 581, 1005
BbvI GCAGC 9 cut(s) 38, 77, 485, 513, 823, 845, 912, 1111, 1268
BccI CCATC 5 cut(s) 304, 379, 1034, 1093, 1243
BceAI ACGGC 1 cut(s) 503
BcgI CGANNNNNNTGC 3 cut(s) 137, 171, 1372
BciT130I CCWGG 4 cut(s) 352, 533, 911, 1020
BciVI GTATCC 2 cut(s) 1022, 1142
BcoDI GTCTC 4 cut(s) 34, 75, 370, 406
BfmI CTRYAG 1 cut(s) 499
BfoI RGCGCY 1 cut(s) 1100
BfrI CTTAAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 1202
BfuI GTATCC 2 cut(s) 1022, 1142
BlnI CCTAGG 1 cut(s) 799
BlpI GCTNAGC 1 cut(s) 1057
BmcAI AGTACT 2 cut(s) 882, 1245
Bme1390I CCNGG 4 cut(s) 352, 533, 911, 1020
BmeRI GACNNNNNGTC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 1079
BmiI GGNNCC 3 cut(s) 356, 594, 908
BmrFI CCNGG 4 cut(s) 352, 533, 911, 1020
BmsI GCATC 5 cut(s) 126, 618, 657, 745, 1252
BpiI GAAGAC 2 cut(s) 725, 995
Bpu1102I GCTNAGC 1 cut(s) 1057
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 5 cut(s) 271, 532, 588, 799, 1018
BsaWI WCCGGW 3 cut(s) 488, 903, 992
Bsc4I CCNNNNNNNGG 4 cut(s) 910, 1167, 1272, 1324
Bse1I ACTGG 2 cut(s) 85, 105
BseAI TCCGGA 1 cut(s) 488
BseBI CCWGG 4 cut(s) 352, 533, 911, 1020
BseDI CCNNGG 5 cut(s) 271, 532, 588, 799, 1018
BseGI GGATG 5 cut(s) 248, 264, 319, 1085, 1264
BseLI CCNNNNNNNGG 4 cut(s) 910, 1167, 1272, 1324
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 2 cut(s) 85, 105
BseXI GCAGC 9 cut(s) 38, 77, 485, 513, 823, 845, 912, 1111, 1268
BseYI CCCAGC 1 cut(s) 1127
BshFI GGCC 3 cut(s) 104, 276, 518
BshNI GGYRCC 2 cut(s) 354, 906
BsiHKAI GWGCWC 2 cut(s) 581, 1005
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 3 cut(s) 489, 904, 993
BslI CCNNNNNNNGG 4 cut(s) 910, 1167, 1272, 1324
BsmAI GTCTC 4 cut(s) 34, 75, 370, 406
BsmI GAATGC 1 cut(s) 1358
BsnI GGCC 3 cut(s) 104, 276, 518
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 1079
Bsp1286I GDGCHC 2 cut(s) 581, 1005
Bsp13I TCCGGA 1 cut(s) 488
Bsp143I GATC 1 cut(s) 1075
Bsp1720I GCTNAGC 1 cut(s) 1057
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 1 cut(s) 609
BspANI GGCC 3 cut(s) 104, 276, 518
BspCNI CTCAG 1 cut(s) 298
BspEI TCCGGA 1 cut(s) 488
BspLI GGNNCC 3 cut(s) 356, 594, 908
BspMAI CTGCAG 1 cut(s) 503
BspMI ACCTGC 1 cut(s) 1202
BspQI GCTCTTC 1 cut(s) 1021
BspT107I GGYRCC 2 cut(s) 354, 906
BspTI CTTAAG 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 85, 105
BssECI CCNNGG 5 cut(s) 271, 532, 588, 799, 1018
BssMI GATC 1 cut(s) 1075
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 3 cut(s) 271, 588, 799
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 4 cut(s) 352, 533, 911, 1020
Bst4CI ACNGT 2 cut(s) 449, 641
Bst6I CTCTTC 1 cut(s) 1021
BstAFI CTTAAG 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 4 cut(s) 306, 890, 945, 1057
BstDSI CCRYGG 1 cut(s) 588
BstEII GGTNACC 1 cut(s) 794
BstF5I GGATG 5 cut(s) 248, 264, 319, 1085, 1264
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 2 cut(s) 506, 1099
BstKTI GATC 1 cut(s) 1078
BstMAI GTCTC 4 cut(s) 34, 75, 370, 406
BstMBI GATC 1 cut(s) 1075
BstMWI GCNNNNNNNGC 4 cut(s) 290, 507, 842, 931
BstNI CCWGG 4 cut(s) 352, 533, 911, 1020
BstNSI RCATGY 1 cut(s) 740
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 4 cut(s) 350, 531, 909, 1018
BstSFI CTRYAG 1 cut(s) 499
BstV1I GCAGC 9 cut(s) 38, 77, 485, 513, 823, 845, 912, 1111, 1268
BstV2I GAAGAC 2 cut(s) 725, 995
BstXI CCANNNNNNTGG 1 cut(s) 1022
BsuI GTATCC 2 cut(s) 1022, 1142
BsuRI GGCC 3 cut(s) 104, 276, 518
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 5 cut(s) 248, 264, 319, 1085, 1264
BtsIMutI CAGTG 1 cut(s) 92
BveI ACCTGC 1 cut(s) 1202
Cac8I GCNNGC 1 cut(s) 508
CaiI CAGNNNCTG 1 cut(s) 1127
CfoI GCGC 2 cut(s) 506, 1099
CsiI ACCWGGT 1 cut(s) 909
Csp6I GTAC 6 cut(s) 355, 881, 907, 942, 1138, 1244
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 9 cut(s) 133, 153, 169, 406, 589, 625, 737, 1153, 1324
CviQI GTAC 6 cut(s) 355, 881, 907, 942, 1138, 1244
DdeI CTNAG 4 cut(s) 306, 890, 945, 1057
DpnI GATC 1 cut(s) 1077
DpnII GATC 1 cut(s) 1075
DriI GACNNNNNGTC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 1021
Eam1105I GACNNNNNGTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 1021
Eco130I CCWWGG 3 cut(s) 271, 588, 799
Eco31I GGTCTC 1 cut(s) 75
Eco32I GATATC 1 cut(s) 469
Eco57I CTGAAG 2 cut(s) 345, 950
Eco88I CYCGRG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 4 cut(s) 350, 531, 909, 1018
EcoRV GATATC 1 cut(s) 469
EcoT14I CCWWGG 3 cut(s) 271, 588, 799
ErhI CCWWGG 3 cut(s) 271, 588, 799
FaeI CATG 9 cut(s) 136, 156, 172, 409, 592, 628, 740, 1156, 1327
FatI CATG 9 cut(s) 132, 152, 168, 405, 588, 624, 736, 1152, 1323
FokI GGATG 5 cut(s) 235, 251, 326, 1072, 1271
GlaI GCGC 2 cut(s) 505, 1098
GsaI CCCAGC 1 cut(s) 1131
HaeII RGCGCY 1 cut(s) 1100
HaeIII GGCC 3 cut(s) 104, 276, 518
HapII CCGG 3 cut(s) 489, 904, 993
HhaI GCGC 2 cut(s) 506, 1099
Hin1II CATG 9 cut(s) 136, 156, 172, 409, 592, 628, 740, 1156, 1327
Hin6I GCGC 2 cut(s) 504, 1097
HinP1I GCGC 2 cut(s) 504, 1097
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 7 cut(s) 149, 181, 296, 557, 584, 917, 1189
HpaII CCGG 3 cut(s) 489, 904, 993
HphI GGTGA 4 cut(s) 251, 411, 667, 1193
Hpy166II GTNNAC 2 cut(s) 445, 675
Hpy188I TCNGA 2 cut(s) 307, 1106
Hpy188III TCNNGA 9 cut(s) 13, 211, 435, 472, 489, 709, 1079, 1089, 1174
Hpy8I GTNNAC 2 cut(s) 445, 675
HpyAV CCTTC 3 cut(s) 369, 426, 1171
HpyCH4III ACNGT 2 cut(s) 449, 641
HpyCH4V TGCA 5 cut(s) 172, 501, 771, 1224, 1284
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 507, 842, 931
HpyF3I CTNAG 4 cut(s) 306, 890, 945, 1057
Hsp92II CATG 9 cut(s) 136, 156, 172, 409, 592, 628, 740, 1156, 1327
HspAI GCGC 2 cut(s) 504, 1097
Kpn2I TCCGGA 1 cut(s) 488
KpnI GGTACC 2 cut(s) 358, 910
Kzo9I GATC 1 cut(s) 1075
LguI GCTCTTC 1 cut(s) 1021
LmnI GCTCC 3 cut(s) 144, 598, 1208
Lsp1109I GCAGC 9 cut(s) 38, 77, 485, 513, 823, 845, 912, 1111, 1268
LweI GCATC 5 cut(s) 126, 618, 657, 745, 1252
MabI ACCWGGT 1 cut(s) 909
MaeIII GTNAC 4 cut(s) 449, 794, 1112, 1292
MalI GATC 1 cut(s) 1077
MboI GATC 1 cut(s) 1075
MboII GAAGA 6 cut(s) 206, 696, 730, 794, 1000, 1038
MhlI GDGCHC 2 cut(s) 581, 1005
MluCI AATT 4 cut(s) 226, 713, 763, 1385
MlyI GAGTC 4 cut(s) 143, 551, 593, 926
MmeI TCCRAC 1 cut(s) 949
MroI TCCGGA 1 cut(s) 488
MseI TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
MslI CAYNNNNRTG 2 cut(s) 389, 1020
MspA1I CMGCKG 2 cut(s) 836, 1124
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 3 cut(s) 489, 904, 993
MspR9I CCNGG 4 cut(s) 352, 533, 911, 1020
Mva1269I GAATGC 1 cut(s) 1358
MvaI CCWGG 4 cut(s) 352, 533, 911, 1020
MwoI GCNNNNNNNGC 4 cut(s) 290, 507, 842, 931
NcoI CCATGG 1 cut(s) 588
NdeII GATC 1 cut(s) 1075
NlaIII CATG 9 cut(s) 136, 156, 172, 409, 592, 628, 740, 1156, 1327
NlaIV GGNNCC 3 cut(s) 356, 594, 908
NmeAIII GCCGAG 1 cut(s) 302
NspI RCATGY 1 cut(s) 740
OliI CACNNNNGTG 1 cut(s) 1020
PaeR7I CTCGAG 1 cut(s) 1079
PciI ACATGT 1 cut(s) 736
PciSI GCTCTTC 1 cut(s) 1021
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 1 cut(s) 1358
PfeI GAWTC 3 cut(s) 181, 296, 1189
PflMI CCANNNNNTGG 1 cut(s) 1272
PleI GAGTC 4 cut(s) 143, 551, 592, 925
PpsI GAGTC 4 cut(s) 143, 551, 592, 925
PscI ACATGT 1 cut(s) 736
Psp6I CCWGG 4 cut(s) 350, 531, 909, 1018
PspEI GGTNACC 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 4 cut(s) 350, 531, 909, 1018
PspN4I GGNNCC 3 cut(s) 356, 594, 908
PstI CTGCAG 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 1127
PvuII CAGCTG 2 cut(s) 836, 1124
RsaI GTAC 6 cut(s) 356, 882, 908, 943, 1139, 1245
RsaNI GTAC 6 cut(s) 355, 881, 907, 942, 1138, 1244
RseI CAYNNNNRTG 2 cut(s) 389, 1020
SapI GCTCTTC 1 cut(s) 1021
SaqAI TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
Sau3AI GATC 1 cut(s) 1075
ScaI AGTACT 2 cut(s) 882, 1245
SchI GAGTC 4 cut(s) 143, 551, 593, 926
ScrFI CCNGG 4 cut(s) 352, 533, 911, 1020
SduI GDGCHC 2 cut(s) 581, 1005
SexAI ACCWGGT 1 cut(s) 909
SfaNI GCATC 5 cut(s) 126, 618, 657, 745, 1252
SfcI CTRYAG 1 cut(s) 499
Sfr274I CTCGAG 1 cut(s) 1079
SlaI CTCGAG 1 cut(s) 1079
SmiMI CAYNNNNRTG 2 cut(s) 389, 1020
SmlI CTYRAG 2 cut(s) 692, 1079
SmoI CTYRAG 2 cut(s) 692, 1079
Sse9I AATT 4 cut(s) 226, 713, 763, 1385
SsiI CCGC 1 cut(s) 609
SspI AATATT 1 cut(s) 1231
StyD4I CCNGG 4 cut(s) 350, 531, 909, 1018
StyI CCWWGG 3 cut(s) 271, 588, 799
TaaI ACNGT 2 cut(s) 449, 641
TaqI TCGA 6 cut(s) 327, 381, 436, 665, 746, 1080
TasI AATT 4 cut(s) 226, 713, 763, 1385
TatI WGTACW 2 cut(s) 880, 1243
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 3 cut(s) 181, 296, 1189
Tru1I TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
Tru9I TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
TscAI CASTG 1 cut(s) 92
TseI GCWGC 9 cut(s) 51, 90, 498, 501, 833, 836, 925, 1124, 1281
TspDTI ATGAA 4 cut(s) 330, 1001, 1312, 1365
TspRI CASTG 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 1272
Vha464I CTTAAG 1 cut(s) 692
XceI RCATGY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 1321
XhoI CTCGAG 1 cut(s) 1079
XmaJI CCTAGG 1 cut(s) 799
ZrmI AGTACT 2 cut(s) 882, 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.