Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004695.1

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Reverse (-)

8022 .. 10264

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004695.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgttgggcttccaagctcctttcttgggtggaactgatggcttcacgtcgggcttcctccacctcgtgttgggcttccaccacctcgagttggcggagctctatggaaaggactatgcattttggcatagctttcggagagatgagaaaatgtcacaactatgtggtctcttcctctcacgtcactttcggaccatgccctccgaccatacctatcatcagagcgtgacacctggcctaataggtaagagttggcccttgatttccgctaactatgtctcctttgcaatcactttgtctaagagtgatcctggtagtcgaggccttagccttgaaggcttaggtgaagaaacttcttgcccaagaaacatcgtccaaggccgagaagaatgtccaactcgagaagattcgctcgcagaaatggatgaaatcatctttgccacagttgacaagctttttgccaggaacagttcaatccctccatcacaaattgacattctcgtcgtcaatgtcttcatgcataatttgttcaagtcatacaagaattcatatgctgttgttgtcagcactgaatccatggctcctaataggtattgtgggatagaaaaatccatgatgctcacgaactgtttgtttcgggcaggagggtgttcgatgctgttcacaaatagaagatcccttcagcacctagcaatgttgaaattgaagtggttggtcagaacccatattggctcaagtgacaaggcttatgaatgttgcatacaacttgaagatgaaagtggacatctaggctttcgacttaccaaacacgtcacagaagcagcagctcttgctttcacagtgaacctccaagttttagctggaattcaacacttctgtctccaccctggtggaagagcaattataaatgggataggtaagagcttatcattaagcgactatgatcttgagccatctagaatggcgctttacagatttggtaacacaccagctgctggcttttggtatgctttgggatacatggaagccaaacaaaggcttaagaggggtgataggattctaatgagtgtggctttggagcagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

362

Amino Acids

40.52

Weight (kDa)

8.05

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	905
AasI	GACNNNNNNGTC	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	995
AciI	CCGC	2 cut(s)	95, 267
AclWI	GGATC	2 cut(s)	302, 669
AcsI	RAATTY	2 cut(s)	544, 864
AcuI	CTGAAG	1 cut(s)	665
AdeI	CACNNNGTG	1 cut(s)	67
AfiI	CCNNNNNNNGG	5 cut(s)	26, 70, 91, 995, 1035
AflII	CTTAAG	1 cut(s)	1040
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	7 cut(s)	335, 474, 532, 700, 706, 770, 869
AjiI	CACGTC	3 cut(s)	48, 182, 811
AjnI	CCWGG	4 cut(s)	232, 310, 461, 886
AleI	CACNNNNGTG	1 cut(s)	888
AluBI	AGCT	8 cut(s)	17, 100, 132, 454, 827, 860, 924, 992
AluI	AGCT	8 cut(s)	17, 100, 132, 454, 827, 860, 924, 992
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	3 cut(s)	173, 283, 884
AlwI	GGATC	2 cut(s)	302, 669
AlwNI	CAGNNNCTG	1 cut(s)	995
Ama87I	CYCGRG	2 cut(s)	86, 399
AoxI	GGCC	4 cut(s)	235, 254, 322, 379
ApeKI	GCWGC	3 cut(s)	821, 824, 992
ApoI	RAATTY	2 cut(s)	544, 864
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspLEI	GCGC	1 cut(s)	967
AspS9I	GGNCC	2 cut(s)	192, 255
AsuHPI	GGTGA	2 cut(s)	356, 1061
AvaI	CYCGRG	2 cut(s)	86, 399
AvaII	GGWCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	102
BauI	CACGAG	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	833, 836, 979
BccI	CCATC	3 cut(s)	32, 490, 961
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	4 cut(s)	234, 312, 463, 888
BciVI	GTATCC	1 cut(s)	1010
BcoDI	GTCTC	3 cut(s)	173, 283, 884
BfaI	CTAG	3 cut(s)	689, 788, 957
BfoI	RGCGCY	1 cut(s)	968
BfrI	CTTAAG	1 cut(s)	1040
BfuI	GTATCC	1 cut(s)	1010
BglI	GCCNNNNNGGC	1 cut(s)	336
BisI	GCNGC	3 cut(s)	822, 825, 993
BlsI	GCNGC	3 cut(s)	823, 826, 994
Bme1390I	CCNGG	4 cut(s)	234, 312, 463, 888
Bme18I	GGWCC	1 cut(s)	192
BmeT110I	CYCGRG	2 cut(s)	86, 399
BmgBI	CACGTC	3 cut(s)	48, 182, 811
BmgT120I	GGNCC	2 cut(s)	192, 255
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	4 cut(s)	234, 312, 463, 888
BmsI	GCATC	2 cut(s)	606, 645
BpiI	GAAGAC	1 cut(s)	505
Bpu10I	CCTNAGC	2 cut(s)	326, 340
BpuEI	CTTGAG	2 cut(s)	718, 968
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	376, 576, 886
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 70, 91, 995, 1035
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	4 cut(s)	234, 312, 463, 888
BseDI	CCNNGG	3 cut(s)	376, 576, 886
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	5 cut(s)	26, 70, 91, 995, 1035
BseMI	GCAATG	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	833, 836, 979
BshFI	GGCC	4 cut(s)	237, 256, 324, 381
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	2 cut(s)	86, 399
BslI	CCNNNNNNNGG	5 cut(s)	26, 70, 91, 995, 1035
BsmAI	GTCTC	3 cut(s)	173, 283, 884
BsnI	GGCC	4 cut(s)	237, 256, 324, 381
Bso31I	GGTCTC	1 cut(s)	173
BsoBI	CYCGRG	2 cut(s)	86, 399
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	307, 674, 943
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	2 cut(s)	95, 267
BspANI	GGCC	4 cut(s)	237, 256, 324, 381
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	2 cut(s)	302, 669
BspQI	GCTCTTC	1 cut(s)	889
BspTI	CTTAAG	1 cut(s)	1040
BspTNI	GGTCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	699
BssECI	CCNNGG	3 cut(s)	376, 576, 886
BssMI	GATC	3 cut(s)	307, 674, 943
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	376, 576
Bst2BI	CACGAG	1 cut(s)	65
Bst2UI	CCWGG	4 cut(s)	234, 312, 463, 888
Bst4CI	ACNGT	4 cut(s)	445, 470, 629, 841
Bst6I	CTCTTC	2 cut(s)	176, 889
BstAFI	CTTAAG	1 cut(s)	1040
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstC8I	GCNNGC	2 cut(s)	414, 997
BstDEI	CTNAG	3 cut(s)	300, 326, 340
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	968
BstHHI	GCGC	1 cut(s)	967
BstKTI	GATC	3 cut(s)	310, 677, 946
BstMAI	GTCTC	3 cut(s)	173, 283, 884
BstMBI	GATC	3 cut(s)	307, 674, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 830
BstNI	CCWGG	4 cut(s)	234, 312, 463, 888
BstSCI	CCNGG	4 cut(s)	232, 310, 461, 886
BstV1I	GCAGC	3 cut(s)	833, 836, 979
BstV2I	GAAGAC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	674
BstXI	CCANNNNNNTGG	1 cut(s)	890
BstYI	RGATCY	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	1010
BsuRI	GGCC	4 cut(s)	237, 256, 324, 381
BtgI	CCRYGG	1 cut(s)	576
BtrI	CACGTC	3 cut(s)	48, 182, 811
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	567, 846
Cac8I	GCNNGC	2 cut(s)	414, 997
CaiI	CAGNNNCTG	1 cut(s)	995
CfoI	GCGC	1 cut(s)	967
Cfr13I	GGNCC	2 cut(s)	192, 255
CviAII	CATG	5 cut(s)	196, 517, 577, 613, 1021
DdeI	CTNAG	3 cut(s)	300, 326, 340
DpnI	GATC	3 cut(s)	309, 676, 945
DpnII	GATC	3 cut(s)	307, 674, 943
DraIII	CACNNNGTG	1 cut(s)	67
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	2 cut(s)	176, 889
EarI	CTCTTC	2 cut(s)	176, 889
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	376, 576
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	665
Eco88I	CYCGRG	2 cut(s)	86, 399
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	2 cut(s)	544, 864
EcoRII	CCWGG	4 cut(s)	232, 310, 461, 886
EcoT14I	CCWWGG	2 cut(s)	376, 576
EcoT22I	ATGCAT	2 cut(s)	121, 522
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	2 cut(s)	376, 576
FaeI	CATG	5 cut(s)	199, 520, 580, 616, 1024
FatI	CATG	5 cut(s)	195, 516, 576, 612, 1020
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	822, 825, 993
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	822, 825, 993
FspBI	CTAG	3 cut(s)	689, 788, 957
GlaI	GCGC	1 cut(s)	966
GluI	GCNGC	3 cut(s)	822, 825, 993
HaeII	RGCGCY	1 cut(s)	968
HaeIII	GGCC	4 cut(s)	237, 256, 324, 381
HhaI	GCGC	1 cut(s)	967
Hin1II	CATG	5 cut(s)	199, 520, 580, 616, 1024
Hin6I	GCGC	1 cut(s)	965
HinP1I	GCGC	1 cut(s)	965
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	3 cut(s)	407, 572, 1057
HphI	GGTGA	2 cut(s)	356, 1061
Hpy166II	GTNNAC	4 cut(s)	448, 663, 782, 844
Hpy188I	TCNGA	5 cut(s)	138, 192, 205, 222, 719
Hpy188III	TCNNGA	4 cut(s)	401, 622, 947, 957
Hpy8I	GTNNAC	4 cut(s)	448, 663, 782, 844
Hpy99I	CGWCG	2 cut(s)	52, 506
HpyAV	CCTTC	2 cut(s)	329, 689
HpyCH4III	ACNGT	4 cut(s)	445, 470, 629, 841
HpyCH4IV	ACGT	3 cut(s)	47, 181, 810
HpyCH4V	TGCA	4 cut(s)	119, 287, 520, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 830
HpyF3I	CTNAG	3 cut(s)	300, 326, 340
HpySE526I	ACGT	3 cut(s)	47, 181, 810
Hsp92II	CATG	5 cut(s)	199, 520, 580, 616, 1024
HspAI	GCGC	1 cut(s)	965
Kzo9I	GATC	3 cut(s)	307, 674, 943
LguI	GCTCTTC	1 cut(s)	889
LmnI	GCTCC	4 cut(s)	22, 97, 586, 1078
Lsp1109I	GCAGC	3 cut(s)	833, 836, 979
LweI	GCATC	2 cut(s)	606, 645
MaeI	CTAG	3 cut(s)	689, 788, 957
MaeII	ACGT	3 cut(s)	47, 181, 810
MaeIII	GTNAC	6 cut(s)	153, 182, 226, 737, 811, 980
MalI	GATC	3 cut(s)	309, 676, 945
MboI	GATC	3 cut(s)	307, 674, 943
MboII	GAAGA	8 cut(s)	163, 359, 398, 416, 505, 684, 782, 906
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	6 cut(s)	489, 523, 544, 701, 864, 900
MmeI	TCCRAC	2 cut(s)	228, 419
Mph1103I	ATGCAT	2 cut(s)	121, 522
MseI	TTAA	3 cut(s)	932, 1041, 1087
MslI	CAYNNNNRTG	2 cut(s)	160, 888
MspA1I	CMGCKG	1 cut(s)	992
MspCI	CTTAAG	1 cut(s)	1040
MspR9I	CCNGG	4 cut(s)	234, 312, 463, 888
MvaI	CCWGG	4 cut(s)	234, 312, 463, 888
MwoI	GCNNNNNNNGC	2 cut(s)	336, 830
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	3 cut(s)	307, 674, 943
NlaIII	CATG	5 cut(s)	199, 520, 580, 616, 1024
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	5 cut(s)	153, 182, 226, 737, 811
NsiI	ATGCAT	2 cut(s)	121, 522
OliI	CACNNNNGTG	1 cut(s)	888
PaeR7I	CTCGAG	2 cut(s)	86, 399
PceI	AGGCCT	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	889
PfeI	GAWTC	3 cut(s)	407, 572, 1057
PflMI	CCANNNNNTGG	1 cut(s)	995
PkrI	GCNGC	3 cut(s)	823, 826, 994
PsiI	TTATAA	1 cut(s)	905
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	4 cut(s)	232, 310, 461, 886
PspGI	CCWGG	4 cut(s)	232, 310, 461, 886
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	192, 255
PspXI	VCTCGAGB	1 cut(s)	86
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	1 cut(s)	674
PvuII	CAGCTG	1 cut(s)	992
RseI	CAYNNNNRTG	2 cut(s)	160, 888
SacI	GAGCTC	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	889
SaqAI	TTAA	3 cut(s)	932, 1041, 1087
SatI	GCNGC	3 cut(s)	822, 825, 993
Sau3AI	GATC	3 cut(s)	307, 674, 943
Sau96I	GGNCC	2 cut(s)	192, 255
ScrFI	CCNGG	4 cut(s)	234, 312, 463, 888
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	2 cut(s)	606, 645
Sfr274I	CTCGAG	2 cut(s)	86, 399
SinI	GGWCC	1 cut(s)	192
SlaI	CTCGAG	2 cut(s)	86, 399
SmiMI	CAYNNNNRTG	2 cut(s)	160, 888
SmlI	CTYRAG	5 cut(s)	86, 399, 733, 947, 1040
SmoI	CTYRAG	5 cut(s)	86, 399, 733, 947, 1040
Sse9I	AATT	6 cut(s)	489, 523, 544, 701, 864, 900
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	95, 267
SspMI	CTAG	3 cut(s)	689, 788, 957
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	4 cut(s)	232, 310, 461, 886
StyI	CCWWGG	2 cut(s)	376, 576
TaaI	ACNGT	4 cut(s)	445, 470, 629, 841
TaiI	ACGT	3 cut(s)	50, 184, 813
TaqI	TCGA	5 cut(s)	87, 319, 400, 653, 796
TasI	AATT	6 cut(s)	489, 523, 544, 701, 864, 900
TfiI	GAWTC	3 cut(s)	407, 572, 1057
Tru1I	TTAA	3 cut(s)	932, 1041, 1087
Tru9I	TTAA	3 cut(s)	932, 1041, 1087
TscAI	CASTG	2 cut(s)	574, 846
TseFI	GTSAC	5 cut(s)	153, 182, 226, 737, 811
TseI	GCWGC	3 cut(s)	821, 824, 992
Tsp45I	GTSAC	5 cut(s)	153, 182, 226, 737, 811
TspDTI	ATGAA	5 cut(s)	441, 505, 537, 765, 789
TspRI	CASTG	2 cut(s)	574, 846
Van91I	CCANNNNNTGG	1 cut(s)	995
Vha464I	CTTAAG	1 cut(s)	1040
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	2 cut(s)	544, 864
XbaI	TCTAGA	1 cut(s)	956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XhoI	CTCGAG	2 cut(s)	86, 399
XspI	CTAG	3 cut(s)	689, 788, 957
Zsp2I	ATGCAT	2 cut(s)	121, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.