Rh1BG102500

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003355
Physical Location & Seq
Reverse (-)
17940091 .. 17941797
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG102500.1

Sequence Viewer

Length: 1398 bp
ATGGAGGTGCTCTTGACAATGTGTCTAGTCTCTCTTTTCTTTGGTTTTTGCTGCCTCTTTAAGTCATTTCTCCAAAGGAGAGACCAGTGTTGCTATCTACTGGCCTATGAGTGCTACAAAGCCAAAGAGGACATGAAGCTCCAAAGCGACTCATGTGCGAAAATCGTCATGCAAAACAAGAATCTGGGGCTGGAAGATTTCAGGTTTCTCTTGAAAACCATTGTCAATTCCGGCATTGGTGAGGAAACTTCCTGCCCAAGAAACATCCTCCAATGCCGAGAAGCAACCCTAGCAGATTCACTCTCTGAGATGGATGAAACCATTTTCGATACACTTGACAAGCTTTTTGCCAGGTACCCTTCAATCTCCCCATCACAAATCGACATTCTCGTGGTCAATGTCTCCATGTTTTCCCCTTCACCCTCCCTAACATCTCGAATAGTGAACCGTTACAAGATGAGGGAGGACATCAAGACATTCAACCTCTCCGGAATGGGCTGCAGCGCAAGCCTAGTGGCCGTTGATGTTGTCCAGGGATTGTTCAAGTCATACAAAGACTCATACGCCCTTGTTGTGAGCACAGAGTCCATGGCTCCTCACTGGTATTGCGGCAAAGAAAAATCCATGATGCTTACCAACTGTTTGTTTCGGTCAGGAGGCTGTTCGATGCTGTTCACCAATAGAAGATACCTTAAGCACCAAGCTATCTTGAAATTGAAGACTTTGGTAAGAACACATATCGGCTCGAGTGATGATGCTTACAATTGTTGCATACAGCTAGAAGATGATAGTGGTTACCTAGGTTTTCGGCTTACCAAATACCTCACAAAAGCAGCAGCTCTTGCTCTCACAATAAACCTACAAGTTCTAGTGCCAAAAATACTTCCACTAAGGGAAATACTCCGGTACCTGGTGGAGTCTAGGCTGCGGAAGAAAAGTGGTACCAAGAGCCAAAACCTAGAAGCAGTTGGAGTTGGTTTGAATATGAAGGCCGGAATAGAGCACTTTTGTATCCACCCTGGTGGAAGAGCAATCATAGATGGGATCGGCAAGAGCTTAGCGTTAAGCGAGTATGATCTCGAGCCGTCTAGAATGGCACTTTTCCGATTTGGTAACACATCAGCTGCTGGGTTTTGGTATGCTTTAGGATACATGGAAGCCAAAAAGAGGCTCAAGAAGGGTGATAGGATTCTTATGAGTGGATTTGGAGCAGGTTTTAAGTGCAGCAATATTGTTTGGGAAGTGGTGAGGGACTTGGATGATGCCAATGTTTGGAAAAGCTGCATAGATAGTTACCCTCCACATATTATAGCCAACCCTTTCATGGAAAAGTTTAGTTGGCTTAATGATGAATGCCTCAGCTTTGTCAGGATTGATTTCGGCAAATTACTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

465

Amino Acids

52.41

Weight (kDa)

8.72

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 24 - 308 6.3e-112 FAE1/Type III polyketide synthase-like protein
Chal_sti_synt_C PF02797 331 - 408 4.1e-09 Chalcone and stilbene synthases, C-terminal domain
ACP_syn_III_C PF08541 332 - 414 4e-12 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1202
Acc65I GGTACC 3 cut(s) 354, 906, 941
AccB1I GGYRCC 3 cut(s) 354, 906, 941
AccB7I CCANNNNNTGG 1 cut(s) 1272
AccIII TCCGGA 1 cut(s) 488
AciI CCGC 2 cut(s) 609, 928
AclWI GGATC 1 cut(s) 1052
AcoI YGGCCR 1 cut(s) 516
AfaI GTAC 3 cut(s) 356, 908, 943
AfiI CCNNNNNNNGG 4 cut(s) 910, 1167, 1272, 1324
AflII CTTAAG 1 cut(s) 692
AgsI TTSAA 7 cut(s) 214, 363, 481, 544, 712, 718, 982
AhdI GACNNNNNGTC 1 cut(s) 21
AjnI CCWGG 4 cut(s) 350, 531, 909, 1018
AleI CACNNNNGTG 1 cut(s) 1020
AluBI AGCT 9 cut(s) 139, 343, 704, 778, 839, 1056, 1124, 1281, 1362
AluI AGCT 9 cut(s) 139, 343, 704, 778, 839, 1056, 1124, 1281, 1362
Alw21I GWGCWC 3 cut(s) 12, 581, 1005
Alw26I GTCTC 3 cut(s) 34, 75, 406
AlwI GGATC 1 cut(s) 1052
AlwNI CAGNNNCTG 1 cut(s) 1127
Ama87I CYCGRG 2 cut(s) 745, 1079
Aor13HI TCCGGA 1 cut(s) 488
AoxI GGCC 3 cut(s) 102, 516, 990
ApeKI GCWGC 9 cut(s) 51, 498, 501, 833, 836, 925, 1124, 1224, 1281
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp718I GGTACC 3 cut(s) 354, 906, 941
AspA2I CCTAGG 1 cut(s) 799
AspLEI GCGC 1 cut(s) 506
AsuHPI GGTGA 5 cut(s) 251, 411, 667, 1193, 1258
AvaI CYCGRG 2 cut(s) 745, 1079
AvrII CCTAGG 1 cut(s) 799
BaeI ACNNNNGTAYC 4 cut(s) 890, 923, 994, 1027
BanI GGYRCC 3 cut(s) 354, 906, 941
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 725
Bbv12I GWGCWC 3 cut(s) 12, 581, 1005
BbvCI CCTCAGC 1 cut(s) 1358
BbvI GCAGC 9 cut(s) 38, 485, 513, 845, 848, 912, 1111, 1236, 1268
BccI CCATC 3 cut(s) 304, 379, 1034
BceAI ACGGC 2 cut(s) 503, 1069
BcgI CGANNNNNNTGC 3 cut(s) 137, 171, 1372
BciT130I CCWGG 4 cut(s) 352, 533, 911, 1020
BciVI GTATCC 2 cut(s) 1022, 1142
BcoDI GTCTC 3 cut(s) 34, 75, 406
BfaI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
BfmI CTRYAG 1 cut(s) 499
BfrI CTTAAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 1202
BfuI GTATCC 2 cut(s) 1022, 1142
BlnI CCTAGG 1 cut(s) 799
BlpI GCTNAGC 1 cut(s) 1057
Bme1390I CCNGG 4 cut(s) 352, 533, 911, 1020
BmeRI GACNNNNNGTC 1 cut(s) 21
BmeT110I CYCGRG 2 cut(s) 745, 1079
BmiI GGNNCC 4 cut(s) 356, 594, 908, 943
BmrFI CCNGG 4 cut(s) 352, 533, 911, 1020
BmsI GCATC 4 cut(s) 618, 657, 745, 1252
BpiI GAAGAC 1 cut(s) 725
Bpu10I CCTNAGC 1 cut(s) 1358
Bpu1102I GCTNAGC 1 cut(s) 1057
BpuEI CTTGAG 1 cut(s) 1157
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 532, 588, 799, 1018
BsaWI WCCGGW 2 cut(s) 488, 903
Bsc4I CCNNNNNNNGG 4 cut(s) 910, 1167, 1272, 1324
Bse1I ACTGG 3 cut(s) 85, 105, 605
BseAI TCCGGA 1 cut(s) 488
BseBI CCWGG 4 cut(s) 352, 533, 911, 1020
BseDI CCNNGG 4 cut(s) 532, 588, 799, 1018
BseGI GGATG 3 cut(s) 264, 319, 1264
BseLI CCNNNNNNNGG 4 cut(s) 910, 1167, 1272, 1324
BseMII CTCAG 2 cut(s) 297, 1372
BseNI ACTGG 3 cut(s) 85, 105, 605
BseRI GAGGAG 1 cut(s) 585
BseXI GCAGC 9 cut(s) 38, 485, 513, 845, 848, 912, 1111, 1236, 1268
BseYI CCCAGC 1 cut(s) 1127
BsgI GTGCAG 1 cut(s) 1243
BshFI GGCC 3 cut(s) 104, 518, 992
BshNI GGYRCC 3 cut(s) 354, 906, 941
BsiHKAI GWGCWC 3 cut(s) 12, 581, 1005
BsiHKCI CYCGRG 2 cut(s) 745, 1079
BsiSI CCGG 4 cut(s) 231, 489, 904, 993
BslFI GGGAC 1 cut(s) 1265
BslI CCNNNNNNNGG 4 cut(s) 910, 1167, 1272, 1324
BsmAI GTCTC 3 cut(s) 34, 75, 406
BsmFI GGGAC 1 cut(s) 1265
BsmI GAATGC 1 cut(s) 1358
BsnI GGCC 3 cut(s) 104, 518, 992
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 2 cut(s) 745, 1079
Bsp1286I GDGCHC 3 cut(s) 12, 581, 1005
Bsp13I TCCGGA 1 cut(s) 488
Bsp143I GATC 2 cut(s) 1044, 1075
Bsp1720I GCTNAGC 1 cut(s) 1057
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 2 cut(s) 609, 928
BspANI GGCC 3 cut(s) 104, 518, 992
BspCNI CTCAG 2 cut(s) 298, 1371
BspEI TCCGGA 1 cut(s) 488
BspLI GGNNCC 4 cut(s) 356, 594, 908, 943
BspMAI CTGCAG 1 cut(s) 503
BspMI ACCTGC 1 cut(s) 1202
BspPI GGATC 1 cut(s) 1052
BspQI GCTCTTC 1 cut(s) 1021
BspT107I GGYRCC 3 cut(s) 354, 906, 941
BspTI CTTAAG 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 3 cut(s) 85, 105, 605
BssECI CCNNGG 4 cut(s) 532, 588, 799, 1018
BssMI GATC 2 cut(s) 1044, 1075
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 588, 799
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 4 cut(s) 352, 533, 911, 1020
Bst4CI ACNGT 2 cut(s) 449, 641
Bst6I CTCTTC 1 cut(s) 1021
BstAFI CTTAAG 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 4 cut(s) 306, 890, 1057, 1358
BstDSI CCRYGG 1 cut(s) 588
BstEII GGTNACC 1 cut(s) 794
BstF5I GGATG 3 cut(s) 264, 319, 1264
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 2 cut(s) 1047, 1078
BstMAI GTCTC 3 cut(s) 34, 75, 406
BstMBI GATC 2 cut(s) 1044, 1075
BstMWI GCNNNNNNNGC 3 cut(s) 290, 507, 842
BstNI CCWGG 4 cut(s) 352, 533, 911, 1020
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 4 cut(s) 350, 531, 909, 1018
BstSFI CTRYAG 1 cut(s) 499
BstV1I GCAGC 9 cut(s) 38, 485, 513, 845, 848, 912, 1111, 1236, 1268
BstV2I GAAGAC 1 cut(s) 725
BstXI CCANNNNNNTGG 1 cut(s) 1022
BsuI GTATCC 2 cut(s) 1022, 1142
BsuRI GGCC 3 cut(s) 104, 518, 992
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 3 cut(s) 264, 319, 1264
BtsIMutI CAGTG 2 cut(s) 92, 598
BveI ACCTGC 1 cut(s) 1202
Cac8I GCNNGC 1 cut(s) 508
CaiI CAGNNNCTG 1 cut(s) 1127
CfoI GCGC 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 909
Csp6I GTAC 3 cut(s) 355, 907, 942
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 8 cut(s) 133, 153, 169, 406, 589, 625, 1153, 1324
CviQI GTAC 3 cut(s) 355, 907, 942
DdeI CTNAG 4 cut(s) 306, 890, 1057, 1358
DpnI GATC 2 cut(s) 1046, 1077
DpnII GATC 2 cut(s) 1044, 1075
DriI GACNNNNNGTC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 1021
Eam1105I GACNNNNNGTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 1021
Eco130I CCWWGG 2 cut(s) 588, 799
Eco31I GGTCTC 1 cut(s) 75
Eco88I CYCGRG 2 cut(s) 745, 1079
Eco91I GGTNACC 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 4 cut(s) 350, 531, 909, 1018
EcoT14I CCWWGG 2 cut(s) 588, 799
ErhI CCWWGG 2 cut(s) 588, 799
FaeI CATG 8 cut(s) 136, 156, 172, 409, 592, 628, 1156, 1327
FaqI GGGAC 1 cut(s) 1265
FatI CATG 8 cut(s) 132, 152, 168, 405, 588, 624, 1152, 1323
FokI GGATG 3 cut(s) 251, 326, 1271
FspBI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
GlaI GCGC 1 cut(s) 505
GsaI CCCAGC 1 cut(s) 1131
HaeIII GGCC 3 cut(s) 104, 518, 992
HapII CCGG 4 cut(s) 231, 489, 904, 993
HhaI GCGC 1 cut(s) 506
Hin1II CATG 8 cut(s) 136, 156, 172, 409, 592, 628, 1156, 1327
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 7 cut(s) 149, 181, 296, 557, 584, 917, 1189
HpaII CCGG 4 cut(s) 231, 489, 904, 993
HphI GGTGA 5 cut(s) 251, 411, 667, 1193, 1258
Hpy166II GTNNAC 2 cut(s) 445, 675
Hpy188I TCNGA 2 cut(s) 307, 1106
Hpy8I GTNNAC 2 cut(s) 445, 675
HpyAV CCTTC 4 cut(s) 369, 426, 982, 1171
HpyCH4III ACNGT 2 cut(s) 449, 641
HpyCH4V TGCA 5 cut(s) 172, 501, 771, 1224, 1284
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 507, 842
HpyF3I CTNAG 4 cut(s) 306, 890, 1057, 1358
Hsp92II CATG 8 cut(s) 136, 156, 172, 409, 592, 628, 1156, 1327
HspAI GCGC 1 cut(s) 504
Kpn2I TCCGGA 1 cut(s) 488
KpnI GGTACC 3 cut(s) 358, 910, 945
Kzo9I GATC 2 cut(s) 1044, 1075
LguI GCTCTTC 1 cut(s) 1021
LmnI GCTCC 3 cut(s) 144, 598, 1208
Lsp1109I GCAGC 9 cut(s) 38, 485, 513, 845, 848, 912, 1111, 1236, 1268
LweI GCATC 4 cut(s) 618, 657, 745, 1252
MabI ACCWGGT 1 cut(s) 909
MaeI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
MaeIII GTNAC 4 cut(s) 449, 794, 1112, 1292
MalI GATC 2 cut(s) 1046, 1077
MboI GATC 2 cut(s) 1044, 1075
MboII GAAGA 6 cut(s) 206, 696, 730, 794, 943, 1038
MfeI CAATTG 1 cut(s) 763
MhlI GDGCHC 3 cut(s) 12, 581, 1005
MluCI AATT 4 cut(s) 226, 713, 763, 1385
MlyI GAGTC 4 cut(s) 143, 551, 593, 926
MmeI TCCRAC 1 cut(s) 949
MroI TCCGGA 1 cut(s) 488
MseI TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
MslI CAYNNNNRTG 2 cut(s) 389, 1020
MspA1I CMGCKG 1 cut(s) 1124
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 4 cut(s) 231, 489, 904, 993
MspR9I CCNGG 4 cut(s) 352, 533, 911, 1020
MunI CAATTG 1 cut(s) 763
Mva1269I GAATGC 1 cut(s) 1358
MvaI CCWGG 4 cut(s) 352, 533, 911, 1020
MwoI GCNNNNNNNGC 3 cut(s) 290, 507, 842
NcoI CCATGG 1 cut(s) 588
NdeII GATC 2 cut(s) 1044, 1075
NlaIII CATG 8 cut(s) 136, 156, 172, 409, 592, 628, 1156, 1327
NlaIV GGNNCC 4 cut(s) 356, 594, 908, 943
NmeAIII GCCGAG 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 1020
PaeR7I CTCGAG 2 cut(s) 745, 1079
PciSI GCTCTTC 1 cut(s) 1021
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 1 cut(s) 1358
PfeI GAWTC 3 cut(s) 181, 296, 1189
PflMI CCANNNNNTGG 1 cut(s) 1272
PleI GAGTC 4 cut(s) 143, 551, 592, 925
PpsI GAGTC 4 cut(s) 143, 551, 592, 925
Psp6I CCWGG 4 cut(s) 350, 531, 909, 1018
PspEI GGTNACC 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 4 cut(s) 350, 531, 909, 1018
PspN4I GGNNCC 4 cut(s) 356, 594, 908, 943
PspXI VCTCGAGB 1 cut(s) 745
PstI CTGCAG 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 1127
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 3 cut(s) 356, 908, 943
RsaNI GTAC 3 cut(s) 355, 907, 942
RseI CAYNNNNRTG 2 cut(s) 389, 1020
SapI GCTCTTC 1 cut(s) 1021
SaqAI TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
Sau3AI GATC 2 cut(s) 1044, 1075
SchI GAGTC 4 cut(s) 143, 551, 593, 926
ScrFI CCNGG 4 cut(s) 352, 533, 911, 1020
SduI GDGCHC 3 cut(s) 12, 581, 1005
SexAI ACCWGGT 1 cut(s) 909
SfaNI GCATC 4 cut(s) 618, 657, 745, 1252
SfcI CTRYAG 1 cut(s) 499
Sfr274I CTCGAG 2 cut(s) 745, 1079
SlaI CTCGAG 2 cut(s) 745, 1079
SmiMI CAYNNNNRTG 2 cut(s) 389, 1020
SmlI CTYRAG 4 cut(s) 692, 745, 1079, 1172
SmoI CTYRAG 4 cut(s) 692, 745, 1079, 1172
Sse9I AATT 4 cut(s) 226, 713, 763, 1385
SsiI CCGC 2 cut(s) 609, 928
SspI AATATT 1 cut(s) 1231
SspMI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
StyD4I CCNGG 4 cut(s) 350, 531, 909, 1018
StyI CCWWGG 2 cut(s) 588, 799
TaaI ACNGT 2 cut(s) 449, 641
TaqI TCGA 6 cut(s) 327, 381, 436, 665, 746, 1080
TaqII GACCGA 1 cut(s) 639
TasI AATT 4 cut(s) 226, 713, 763, 1385
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 3 cut(s) 181, 296, 1189
Tru1I TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
Tru9I TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
TscAI CASTG 2 cut(s) 92, 605
TseI GCWGC 9 cut(s) 51, 498, 501, 833, 836, 925, 1124, 1224, 1281
TspDTI ATGAA 5 cut(s) 149, 330, 1001, 1312, 1365
TspRI CASTG 2 cut(s) 92, 605
Van91I CCANNNNNTGG 1 cut(s) 1272
Vha464I CTTAAG 1 cut(s) 692
XbaI TCTAGA 1 cut(s) 1088
XcmI CCANNNNNNNNNTGG 1 cut(s) 1321
XhoI CTCGAG 2 cut(s) 745, 1079
XmaJI CCTAGG 1 cut(s) 799
XspI CTAG 9 cut(s) 26, 290, 512, 779, 800, 869, 921, 959, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.