RLG00000027437

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003355
Physical Location & Seq
Forward (+)
11636407 .. 11637804
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027437

Sequence Viewer

Length: 1398 bp
ATGGAGTTGCTCTTGAAAATGTGTCTAGTCTCTCTTTTCTTTGGTTTTTGCTGCCTCTTTAAGTCATTTCTCCAAAGGAGAGACCAGTGCTGCTATCTACTGGCCTATGAGTGCTACAAAGCCAAAGAGGACTTGCAGCTCCAAACCGACACATGTGCGAAAATCGTCATGCAAAACAAGAATCTGGGGCTGGAAGATTTCAGGTTCCTCTTGAAAACCATTGTCAATTCCGGCATTGGTGAGGAAACATCCTGCCCAAGAAACATCCTCCAAGGCCGAGAAGCAACCCTAGCAGATTCACTCTCTGAGATGGATGAAACCATTTTCGATACACTTGACAAGCTTTTCGCCAGGTACCCTTCAGTCTCCCCATCACAAATCGACATTCTCGTGGTCAATGTATCCATGTTCTCCCCTTCACCCTCCCTAACATCTCGAATAGTGAACCGTTACAAGATGAGGGAAGACATCAAGACATTCAACCTCTCCGGAATGGGCTGCAGCGCAAGCCTAGTGGCCGTTGATGTCGTCCAGGGCTTGTTCAAGTCATACAAAGATTCATACGCCCTTGTTGTGAGCACAGAGTCCATGGCCCCTTTCTGGTATTGCGGCAAAGAAAAATCCATGATGCTTACCAACTGTTTGTTTCGGTTAGGAGGCTGTTCGATGCTGTTCACCAATAAAAGATACCTTAAGCACCAAGCTATCTTGAAATTGAAGACTTTGGTAAGAACACATATTGGCTCGAATGATGATGCTTACAATTCTTGCATACAGCTAGAAGATGATCGTGGTTACCTAGGTTTTCGGCTTACCAAATACCTCACAAAAGCAGCAGCTCTTGCTCTCGCAATAAACCTACAAGTTCTAGTGCCAAAAGTACTTCCACCAAGGGAAATATTCCGGTACCTAGTGGAGTCTAGGCTGCAGAAGAAAAGTGGTACCAAGAGCCAAAACCTAGAAGCAGTAGGAGCTGGTTTGAATTTGAAGGCCGGAATAGAGCACTTTTGTATCCACCCTGGTGGAAGAGCAATCATAGATGGGATTGGCAAGTGCTTATCATTAAGCGAATATGATCTCGAGCCGTCTAGAATGGCGCTTTTCCGATTTGGTAACACATCAGCTGCTGGGTTCTGGTATGCTTTAGGATACATGGAAGCCAAAAAGAGGCTCAAGAAGGGTGATAGGATTCTTATGAGTGGATTTGGAGCAGGTTTTAAGTGCAACAATATTGTTTGGGAAGTACTGAGGGACTTGGATGATGCCAATGTTTGGAAAAGCTGCATAGACAGTTACCCTCCACATATTATAGCCAACCCTTTCATGGAAAAGTTTAGTTGGCTTAATGAGGAATGCCTCAACTTTGTTAGAATTGACTTCAGCAAAGTACTCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

466

Amino Acids

52.52

Weight (kDa)

8.74

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 24 - 311 1.3e-109 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 332 - 414 1e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 336 - 409 1.8e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1202
Acc65I GGTACC 3 cut(s) 354, 906, 941
AccB1I GGYRCC 3 cut(s) 354, 906, 941
AccB7I CCANNNNNTGG 1 cut(s) 1272
AccIII TCCGGA 1 cut(s) 488
AciI CCGC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 1 cut(s) 982
AcuI CTGAAG 2 cut(s) 345, 1363
AfaI GTAC 6 cut(s) 356, 882, 908, 943, 1245, 1389
AfiI CCNNNNNNNGG 4 cut(s) 600, 1167, 1272, 1324
AflII CTTAAG 1 cut(s) 692
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 8 cut(s) 16, 214, 481, 544, 712, 718, 982, 988
AjnI CCWGG 3 cut(s) 350, 531, 1018
AleI CACNNNNGTG 1 cut(s) 1020
AluBI AGCT 8 cut(s) 139, 343, 704, 778, 839, 974, 1124, 1281
AluI AGCT 8 cut(s) 139, 343, 704, 778, 839, 974, 1124, 1281
Alw21I GWGCWC 2 cut(s) 581, 1005
Alw26I GTCTC 3 cut(s) 34, 75, 370
AlwNI CAGNNNCTG 1 cut(s) 1127
Ama87I CYCGRG 1 cut(s) 1079
Aor13HI TCCGGA 1 cut(s) 488
AoxI GGCC 5 cut(s) 102, 274, 516, 591, 990
ApoI RAATTY 1 cut(s) 982
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp718I GGTACC 3 cut(s) 354, 906, 941
AspA2I CCTAGG 1 cut(s) 799
AspLEI GCGC 2 cut(s) 506, 1099
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 4 cut(s) 251, 411, 667, 1193
AvaI CYCGRG 1 cut(s) 1079
AvrII CCTAGG 1 cut(s) 799
BaeI ACNNNNGTAYC 2 cut(s) 994, 1027
BanI GGYRCC 3 cut(s) 354, 906, 941
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 471, 725
Bbv12I GWGCWC 2 cut(s) 581, 1005
BccI CCATC 3 cut(s) 304, 379, 1034
BceAI ACGGC 2 cut(s) 503, 1069
BcgI CGANNNNNNTGC 3 cut(s) 137, 171, 1372
BciT130I CCWGG 3 cut(s) 352, 533, 1020
BciVI GTATCC 3 cut(s) 412, 1022, 1142
BcoDI GTCTC 3 cut(s) 34, 75, 370
BfmI CTRYAG 2 cut(s) 499, 926
BfoI RGCGCY 1 cut(s) 1100
BfrI CTTAAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 1202
BfuI GTATCC 3 cut(s) 412, 1022, 1142
BlnI CCTAGG 1 cut(s) 799
BmcAI AGTACT 3 cut(s) 882, 1245, 1389
Bme1390I CCNGG 3 cut(s) 352, 533, 1020
BmeT110I CYCGRG 1 cut(s) 1079
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 5 cut(s) 206, 356, 594, 908, 943
BmrFI CCNGG 3 cut(s) 352, 533, 1020
BmsI GCATC 4 cut(s) 618, 657, 745, 1252
BpiI GAAGAC 2 cut(s) 471, 725
BpuEI CTTGAG 1 cut(s) 1157
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 6 cut(s) 271, 532, 588, 799, 890, 1018
BsaWI WCCGGW 2 cut(s) 488, 903
Bsc4I CCNNNNNNNGG 4 cut(s) 600, 1167, 1272, 1324
Bse1I ACTGG 2 cut(s) 85, 105
BseAI TCCGGA 1 cut(s) 488
BseBI CCWGG 3 cut(s) 352, 533, 1020
BseDI CCNNGG 6 cut(s) 271, 532, 588, 799, 890, 1018
BseGI GGATG 4 cut(s) 248, 264, 319, 1264
BseLI CCNNNNNNNGG 4 cut(s) 600, 1167, 1272, 1324
BseMII CTCAG 2 cut(s) 297, 1238
BseNI ACTGG 2 cut(s) 85, 105
BseYI CCCAGC 1 cut(s) 1127
BshFI GGCC 5 cut(s) 104, 276, 518, 593, 992
BshNI GGYRCC 3 cut(s) 354, 906, 941
BsiHKAI GWGCWC 2 cut(s) 581, 1005
BsiHKCI CYCGRG 1 cut(s) 1079
BsiSI CCGG 4 cut(s) 231, 489, 904, 993
BslFI GGGAC 1 cut(s) 1265
BslI CCNNNNNNNGG 4 cut(s) 600, 1167, 1272, 1324
BsmAI GTCTC 3 cut(s) 34, 75, 370
BsmFI GGGAC 1 cut(s) 1265
BsmI GAATGC 1 cut(s) 1358
BsnI GGCC 5 cut(s) 104, 276, 518, 593, 992
Bso31I GGTCTC 1 cut(s) 75
BsoBI CYCGRG 1 cut(s) 1079
Bsp1286I GDGCHC 2 cut(s) 581, 1005
Bsp13I TCCGGA 1 cut(s) 488
Bsp143I GATC 2 cut(s) 787, 1075
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 1 cut(s) 609
BspANI GGCC 5 cut(s) 104, 276, 518, 593, 992
BspCNI CTCAG 2 cut(s) 298, 1239
BspEI TCCGGA 1 cut(s) 488
BspLI GGNNCC 5 cut(s) 206, 356, 594, 908, 943
BspMAI CTGCAG 2 cut(s) 503, 930
BspMI ACCTGC 1 cut(s) 1202
BspQI GCTCTTC 1 cut(s) 1021
BspT107I GGYRCC 3 cut(s) 354, 906, 941
BspTI CTTAAG 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 85, 105
BssECI CCNNGG 6 cut(s) 271, 532, 588, 799, 890, 1018
BssMI GATC 2 cut(s) 787, 1075
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 4 cut(s) 271, 588, 799, 890
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 3 cut(s) 352, 533, 1020
Bst4CI ACNGT 3 cut(s) 449, 641, 1292
Bst6I CTCTTC 1 cut(s) 1021
BstAFI CTTAAG 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 306, 1247
BstDSI CCRYGG 1 cut(s) 588
BstEII GGTNACC 1 cut(s) 794
BstF5I GGATG 4 cut(s) 248, 264, 319, 1264
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 2 cut(s) 506, 1099
BstKTI GATC 2 cut(s) 790, 1078
BstMAI GTCTC 3 cut(s) 34, 75, 370
BstMBI GATC 2 cut(s) 787, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 290, 507, 842, 971
BstNI CCWGG 3 cut(s) 352, 533, 1020
BstNSI RCATGY 1 cut(s) 156
BstPI GGTNACC 1 cut(s) 794
BstSCI CCNGG 3 cut(s) 350, 531, 1018
BstSFI CTRYAG 2 cut(s) 499, 926
BstV2I GAAGAC 2 cut(s) 471, 725
BstXI CCANNNNNNTGG 1 cut(s) 1022
BsuI GTATCC 3 cut(s) 412, 1022, 1142
BsuRI GGCC 5 cut(s) 104, 276, 518, 593, 992
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 4 cut(s) 248, 264, 319, 1264
BtsIMutI CAGTG 1 cut(s) 92
BveI ACCTGC 1 cut(s) 1202
Cac8I GCNNGC 1 cut(s) 508
CaiI CAGNNNCTG 1 cut(s) 1127
CfoI GCGC 2 cut(s) 506, 1099
Cfr13I GGNCC 1 cut(s) 592
Csp6I GTAC 6 cut(s) 355, 881, 907, 942, 1244, 1388
CspCI CAANNNNNGTGG 2 cut(s) 495, 530
CviAII CATG 7 cut(s) 153, 169, 406, 589, 625, 1153, 1324
CviQI GTAC 6 cut(s) 355, 881, 907, 942, 1244, 1388
DdeI CTNAG 2 cut(s) 306, 1247
DpnI GATC 2 cut(s) 789, 1077
DpnII GATC 2 cut(s) 787, 1075
EaeI YGGCCR 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 1021
EarI CTCTTC 1 cut(s) 1021
Eco130I CCWWGG 4 cut(s) 271, 588, 799, 890
Eco31I GGTCTC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 345, 1363
Eco88I CYCGRG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 794
EcoRII CCWGG 3 cut(s) 350, 531, 1018
EcoT14I CCWWGG 4 cut(s) 271, 588, 799, 890
ErhI CCWWGG 4 cut(s) 271, 588, 799, 890
FaeI CATG 7 cut(s) 156, 172, 409, 592, 628, 1156, 1327
FaqI GGGAC 1 cut(s) 1265
FatI CATG 7 cut(s) 152, 168, 405, 588, 624, 1152, 1323
FokI GGATG 4 cut(s) 235, 251, 326, 1271
GlaI GCGC 2 cut(s) 505, 1098
GsaI CCCAGC 1 cut(s) 1131
HaeII RGCGCY 1 cut(s) 1100
HaeIII GGCC 5 cut(s) 104, 276, 518, 593, 992
HapII CCGG 4 cut(s) 231, 489, 904, 993
HhaI GCGC 2 cut(s) 506, 1099
Hin1II CATG 7 cut(s) 156, 172, 409, 592, 628, 1156, 1327
Hin6I GCGC 2 cut(s) 504, 1097
HinP1I GCGC 2 cut(s) 504, 1097
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 6 cut(s) 181, 296, 557, 584, 917, 1189
HpaII CCGG 4 cut(s) 231, 489, 904, 993
HphI GGTGA 4 cut(s) 251, 411, 667, 1193
Hpy166II GTNNAC 2 cut(s) 445, 675
Hpy188I TCNGA 2 cut(s) 307, 1106
Hpy188III TCNNGA 9 cut(s) 13, 211, 435, 472, 489, 709, 1079, 1089, 1174
Hpy8I GTNNAC 2 cut(s) 445, 675
HpyAV CCTTC 4 cut(s) 369, 426, 982, 1171
HpyCH4III ACNGT 3 cut(s) 449, 641, 1292
HpyCH4V TGCA 7 cut(s) 136, 172, 501, 771, 928, 1224, 1284
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 507, 842, 971
HpyF3I CTNAG 2 cut(s) 306, 1247
Hsp92II CATG 7 cut(s) 156, 172, 409, 592, 628, 1156, 1327
HspAI GCGC 2 cut(s) 504, 1097
Kpn2I TCCGGA 1 cut(s) 488
KpnI GGTACC 3 cut(s) 358, 910, 945
Kzo9I GATC 2 cut(s) 787, 1075
LguI GCTCTTC 1 cut(s) 1021
LmnI GCTCC 3 cut(s) 144, 971, 1208
LweI GCATC 4 cut(s) 618, 657, 745, 1252
MaeIII GTNAC 4 cut(s) 449, 794, 1112, 1292
MalI GATC 2 cut(s) 789, 1077
MboI GATC 2 cut(s) 787, 1075
MboII GAAGA 6 cut(s) 206, 476, 730, 794, 943, 1038
MhlI GDGCHC 2 cut(s) 581, 1005
MluCI AATT 5 cut(s) 226, 713, 763, 982, 1371
MlyI GAGTC 2 cut(s) 593, 926
MroI TCCGGA 1 cut(s) 488
MseI TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
MslI CAYNNNNRTG 2 cut(s) 389, 1020
MspA1I CMGCKG 1 cut(s) 1124
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 4 cut(s) 231, 489, 904, 993
MspR9I CCNGG 3 cut(s) 352, 533, 1020
Mva1269I GAATGC 1 cut(s) 1358
MvaI CCWGG 3 cut(s) 352, 533, 1020
MwoI GCNNNNNNNGC 4 cut(s) 290, 507, 842, 971
NcoI CCATGG 1 cut(s) 588
NdeII GATC 2 cut(s) 787, 1075
NlaIII CATG 7 cut(s) 156, 172, 409, 592, 628, 1156, 1327
NlaIV GGNNCC 5 cut(s) 206, 356, 594, 908, 943
NmeAIII GCCGAG 1 cut(s) 302
NspI RCATGY 1 cut(s) 156
OliI CACNNNNGTG 1 cut(s) 1020
PaeR7I CTCGAG 1 cut(s) 1079
PciI ACATGT 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 1021
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 1 cut(s) 1358
PfeI GAWTC 4 cut(s) 181, 296, 557, 1189
PflMI CCANNNNNTGG 1 cut(s) 1272
PleI GAGTC 2 cut(s) 592, 925
PpsI GAGTC 2 cut(s) 592, 925
PscI ACATGT 1 cut(s) 152
Psp6I CCWGG 3 cut(s) 350, 531, 1018
PspEI GGTNACC 1 cut(s) 794
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 3 cut(s) 350, 531, 1018
PspN4I GGNNCC 5 cut(s) 206, 356, 594, 908, 943
PspPI GGNCC 1 cut(s) 592
PstI CTGCAG 2 cut(s) 503, 930
PstNI CAGNNNCTG 1 cut(s) 1127
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 6 cut(s) 356, 882, 908, 943, 1245, 1389
RsaNI GTAC 6 cut(s) 355, 881, 907, 942, 1244, 1388
RseI CAYNNNNRTG 2 cut(s) 389, 1020
SapI GCTCTTC 1 cut(s) 1021
SaqAI TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
Sau3AI GATC 2 cut(s) 787, 1075
Sau96I GGNCC 1 cut(s) 592
ScaI AGTACT 3 cut(s) 882, 1245, 1389
SchI GAGTC 2 cut(s) 593, 926
ScrFI CCNGG 3 cut(s) 352, 533, 1020
SduI GDGCHC 2 cut(s) 581, 1005
SfaNI GCATC 4 cut(s) 618, 657, 745, 1252
SfcI CTRYAG 2 cut(s) 499, 926
Sfr274I CTCGAG 1 cut(s) 1079
SlaI CTCGAG 1 cut(s) 1079
SmiMI CAYNNNNRTG 2 cut(s) 389, 1020
SmlI CTYRAG 3 cut(s) 692, 1079, 1172
SmoI CTYRAG 3 cut(s) 692, 1079, 1172
Sse9I AATT 5 cut(s) 226, 713, 763, 982, 1371
SsiI CCGC 1 cut(s) 609
SspI AATATT 2 cut(s) 900, 1231
StyD4I CCNGG 3 cut(s) 350, 531, 1018
StyI CCWWGG 4 cut(s) 271, 588, 799, 890
TaaI ACNGT 3 cut(s) 449, 641, 1292
TaqI TCGA 6 cut(s) 327, 381, 436, 665, 746, 1080
TasI AATT 5 cut(s) 226, 713, 763, 982, 1371
TatI WGTACW 3 cut(s) 880, 1243, 1387
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 4 cut(s) 181, 296, 557, 1189
Tru1I TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
Tru9I TTAA 6 cut(s) 60, 693, 1064, 1218, 1344, 1396
TscAI CASTG 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 330, 549, 1312
TspRI CASTG 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 1272
Vha464I CTTAAG 1 cut(s) 692
XapI RAATTY 1 cut(s) 982
XbaI TCTAGA 1 cut(s) 1088
XceI RCATGY 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 1321
XhoI CTCGAG 1 cut(s) 1079
XmaJI CCTAGG 1 cut(s) 799
ZrmI AGTACT 3 cut(s) 882, 1245, 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.