Rh1AG329600

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003355
Physical Location & Seq
Reverse (-)
56254755 .. 56255453
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG329600.1

Sequence Viewer

Length: 699 bp
ATGGGCTGCAGTGCAAGTCTAGTTGCCATTGATGTTGTGCAGAATTTGTTCAAGTCATACAAGAATTCGTATGCTGTTGTTGTCAGCACTGAATCCATGGCTCCTAATAGGTATTGTGGGAAAGAAAAATCCATGATGCTCACGAACTGTTTGTTTCGGGCAGGAGGGTGTTCGATGCTGTTCACAAATAGAAGATCCCTTCAGCACCTAGCAATGTTGAAATTGAAGTGGTTGGTCAGAACCCATATTGGCTCAAGTGACAAGGCTTATGAATGTTGCATACAACTTGAAGATGAAAGTGGACATCTAGGCTTTCGACTTACCAAACACGTCACAGAAGCAGCAGCTCTTGCTTTCACAGTGAACCTCCAAGTTTTAGTGCCAAAAGTGCTTCCACTAACAGAAATAATCCGATACCTGGTGGCTTCTAGGCTTCAGAAAAAAAAAAAACAGCAGTACCAAATGCCAAAATCTAGAAGCAGTTGGAGTCGGTTTGAATATAAAGGCTGGAATTCAACACTTCTGTCTCCACCCTGGTGGATAAATGGGATAGGTAAGAGCTTATCATTAAGCGACTATGATCTTGAGCCATCTAGAATGGCGCTTTACAGATTTGGTAACACATCAGCTGCTGGCTTTTGGTATGCTTTGGGATACATGGAAGCCAAACAAAGGCTTAAGAGGGTGATAGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

232

Amino Acids

26.39

Weight (kDa)

9.77

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 1 - 147 5e-56 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 3 cut(s) 43, 64, 511
AcuI CTGAAG 2 cut(s) 185, 419
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 2 cut(s) 418, 672
AflII CTTAAG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 6 cut(s) 52, 220, 226, 290, 497, 516
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 2 cut(s) 417, 533
AleI CACNNNNGTG 1 cut(s) 535
AluBI AGCT 3 cut(s) 347, 561, 629
AluI AGCT 3 cut(s) 347, 561, 629
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 1 cut(s) 189
AlwNI CAGNNNCTG 1 cut(s) 632
ApeKI GCWGC 4 cut(s) 6, 341, 344, 629
ApoI RAATTY 3 cut(s) 43, 64, 511
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 604
AsuHPI GGTGA 1 cut(s) 697
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BbvI GCAGC 3 cut(s) 353, 356, 616
BccI CCATC 1 cut(s) 598
BciT130I CCWGG 2 cut(s) 419, 535
BciVI GTATCC 1 cut(s) 647
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 6 cut(s) 20, 209, 308, 429, 474, 594
BfmI CTRYAG 1 cut(s) 7
BfoI RGCGCY 1 cut(s) 605
BfrI CTTAAG 1 cut(s) 677
BfuI GTATCC 1 cut(s) 647
BisI GCNGC 4 cut(s) 7, 342, 345, 630
BlsI GCNGC 4 cut(s) 8, 343, 346, 631
Bme1390I CCNGG 2 cut(s) 419, 535
BmgBI CACGTC 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 2 cut(s) 419, 535
BmsI GCATC 2 cut(s) 126, 165
BpuEI CTTGAG 2 cut(s) 238, 605
BsaJI CCNNGG 2 cut(s) 96, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 672
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 2 cut(s) 419, 535
BseDI CCNNGG 2 cut(s) 96, 533
BseLI CCNNNNNNNGG 2 cut(s) 418, 672
BseMI GCAATG 1 cut(s) 219
BseXI GCAGC 3 cut(s) 353, 356, 616
BsgI GTGCAG 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 418, 672
BsmAI GTCTC 1 cut(s) 531
Bsp143I GATC 2 cut(s) 194, 580
Bsp19I CCATGG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 11
BspPI GGATC 1 cut(s) 189
BspTI CTTAAG 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 96, 533
BssMI GATC 2 cut(s) 194, 580
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 419, 535
Bst4CI ACNGT 2 cut(s) 149, 361
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 634
BstDSI CCRYGG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 2 cut(s) 197, 583
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 2 cut(s) 194, 580
BstMWI GCNNNNNNNGC 2 cut(s) 350, 388
BstNI CCWGG 2 cut(s) 419, 535
BstSCI CCNGG 2 cut(s) 417, 533
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 353, 356, 616
BstX2I RGATCY 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 537
BstYI RGATCY 1 cut(s) 194
BsuI GTATCC 1 cut(s) 647
BtgI CCRYGG 1 cut(s) 96
BtrI CACGTC 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 3 cut(s) 16, 87, 366
Cac8I GCNNGC 1 cut(s) 634
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 1 cut(s) 604
CsiI ACCWGGT 1 cut(s) 417
Csp6I GTAC 1 cut(s) 457
CviAII CATG 3 cut(s) 97, 133, 658
CviQI GTAC 1 cut(s) 457
DpnI GATC 2 cut(s) 196, 582
DpnII GATC 2 cut(s) 194, 580
Eco130I CCWWGG 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 185, 419
EcoRI GAATTC 2 cut(s) 64, 511
EcoRII CCWGG 2 cut(s) 417, 533
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 3 cut(s) 100, 136, 661
FatI CATG 3 cut(s) 96, 132, 657
Fnu4HI GCNGC 4 cut(s) 7, 342, 345, 630
Fsp4HI GCNGC 4 cut(s) 7, 342, 345, 630
FspBI CTAG 6 cut(s) 20, 209, 308, 429, 474, 594
GlaI GCGC 1 cut(s) 603
GluI GCNGC 4 cut(s) 7, 342, 345, 630
HaeII RGCGCY 1 cut(s) 605
HhaI GCGC 1 cut(s) 604
Hin1II CATG 3 cut(s) 100, 136, 661
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 3 cut(s) 92, 487, 693
HphI GGTGA 1 cut(s) 697
Hpy166II GTNNAC 3 cut(s) 183, 302, 364
Hpy188I TCNGA 3 cut(s) 239, 413, 438
Hpy188III TCNNGA 4 cut(s) 142, 474, 584, 594
Hpy8I GTNNAC 3 cut(s) 183, 302, 364
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 149, 361
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 4 cut(s) 9, 14, 40, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 388
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 3 cut(s) 100, 136, 661
HspAI GCGC 1 cut(s) 602
Kzo9I GATC 2 cut(s) 194, 580
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 7 cut(s) 147, 404, 431, 493, 520, 547, 618
Lsp1109I GCAGC 3 cut(s) 353, 356, 616
LweI GCATC 2 cut(s) 126, 165
MabI ACCWGGT 1 cut(s) 417
MaeI CTAG 6 cut(s) 20, 209, 308, 429, 474, 594
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 3 cut(s) 257, 331, 617
MalI GATC 2 cut(s) 196, 582
MboI GATC 2 cut(s) 194, 580
MboII GAAGA 2 cut(s) 204, 302
MflI RGATCY 1 cut(s) 194
MluCI AATT 4 cut(s) 43, 64, 221, 511
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 3 cut(s) 158, 377, 675
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 569, 678
MslI CAYNNNNRTG 1 cut(s) 535
MspA1I CMGCKG 1 cut(s) 629
MspCI CTTAAG 1 cut(s) 677
MspR9I CCNGG 2 cut(s) 419, 535
MvaI CCWGG 2 cut(s) 419, 535
MwoI GCNNNNNNNGC 2 cut(s) 350, 388
NcoI CCATGG 1 cut(s) 96
NdeII GATC 2 cut(s) 194, 580
NlaIII CATG 3 cut(s) 100, 136, 661
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 2 cut(s) 257, 331
OliI CACNNNNGTG 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 92, 693
PkrI GCNGC 4 cut(s) 8, 343, 346, 631
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 417, 533
PspGI CCWGG 2 cut(s) 417, 533
PspN4I GGNNCC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 11
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 629
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 535
SaqAI TTAA 2 cut(s) 569, 678
SatI GCNGC 4 cut(s) 7, 342, 345, 630
Sau3AI GATC 2 cut(s) 194, 580
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 2 cut(s) 419, 535
SetI ASST 9 cut(s) 113, 210, 333, 349, 369, 420, 556, 563, 631
SexAI ACCWGGT 1 cut(s) 417
SfaNI GCATC 2 cut(s) 126, 165
SfcI CTRYAG 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 535
SmlI CTYRAG 3 cut(s) 253, 584, 677
SmoI CTYRAG 3 cut(s) 253, 584, 677
Sse9I AATT 4 cut(s) 43, 64, 221, 511
SspMI CTAG 6 cut(s) 20, 209, 308, 429, 474, 594
StyD4I CCNGG 2 cut(s) 417, 533
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 149, 361
TaiI ACGT 1 cut(s) 333
TaqI TCGA 2 cut(s) 173, 316
TasI AATT 4 cut(s) 43, 64, 221, 511
TfiI GAWTC 2 cut(s) 92, 693
Tru1I TTAA 2 cut(s) 569, 678
Tru9I TTAA 2 cut(s) 569, 678
TscAI CASTG 3 cut(s) 16, 94, 366
TseFI GTSAC 2 cut(s) 257, 331
TseI GCWGC 4 cut(s) 6, 341, 344, 629
Tsp45I GTSAC 2 cut(s) 257, 331
TspDTI ATGAA 2 cut(s) 285, 309
TspRI CASTG 3 cut(s) 16, 94, 366
Vha464I CTTAAG 1 cut(s) 677
XapI RAATTY 3 cut(s) 43, 64, 511
XbaI TCTAGA 2 cut(s) 473, 593
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 6 cut(s) 20, 209, 308, 429, 474, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.