RchiOBHm_Chr1g0365281

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003355
Physical Location & Seq
Reverse (-)
56225171 .. 56225834
664 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58994

Sequence Viewer

Length: 594 bp
ATGGATGAAATCATCTTTGCCACAGTTGACAAGCTTTTTGCCAGGAACAGTTCGATCCCTCCATCACAAATTGACATTCTCGTCGTCAATGTCTTCATGCATGTTCTCCCCTGCACCTTCTCTACATCCAGAATACTAAATCGTTACAAGATGAGGGAGGACATCAAGACCTTCAACCTAGCTCTCTGGAATGGGCTGCAGTGCAACACTGAATCCATGGCTCCTAATAGGTATTGTGGGAAAGAAAAATCCATGATGCTCACGAACTGTTTGTTTCGGGCAGGAGGGTGTTCGATGCTGTTCACAAATAGAAGATCCCTTCAGCACCTAGCAATGTTGAAATTGAAGTGGTTGGTCAGAACCCATATTGGCCCAAGTGACAAGGCTTATGAATGTTGCATACAACTTGAAGATGAAAGTGGACATCTAGGCTTTCGACTTACCAAACACGTCACAGAAGCAGCAGCTCTTGCTTTCACAGTGAACCTCCAAGTTTTAGTGCCAAAAGTGCTTCCACTAACAGAAATAATCCGATACCTGGTGGCTTCTAGGCTTCAGAAAAAAAAAACAGCAGTACCAAATGCCAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

197

Amino Acids

22.38

Weight (kDa)

9.53

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 1 - 61 3e-13 FAE1/Type III polyketide synthase-like protein
FAE1_CUT1_RppA PF08392 69 - 187 1.5e-40 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AclWI GGATC 2 cut(s) 49, 309
AcuI CTGAAG 2 cut(s) 305, 539
AfaI GTAC 1 cut(s) 576
AfiI CCNNNNNNNGG 1 cut(s) 538
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 4 cut(s) 175, 340, 346, 410
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 2 cut(s) 41, 537
AluBI AGCT 3 cut(s) 34, 182, 467
AluI AGCT 3 cut(s) 34, 182, 467
AlwI GGATC 2 cut(s) 49, 309
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 3 cut(s) 196, 461, 464
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AspS9I GGNCC 1 cut(s) 371
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 3 cut(s) 183, 473, 476
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 2 cut(s) 43, 539
BfaI CTAG 5 cut(s) 179, 329, 428, 549, 592
BfmI CTRYAG 1 cut(s) 197
BisI GCNGC 3 cut(s) 197, 462, 465
BlsI GCNGC 3 cut(s) 198, 463, 466
Bme1390I CCNGG 2 cut(s) 43, 539
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 43, 539
BmsI GCATC 2 cut(s) 246, 285
BpiI GAAGAC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 2 cut(s) 43, 539
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 10, 125
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMI GCAATG 1 cut(s) 339
BseXI GCAGC 3 cut(s) 183, 473, 476
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 538
BsnI GGCC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 54, 314
Bsp19I CCATGG 1 cut(s) 216
BspANI GGCC 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 2 cut(s) 49, 309
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 54, 314
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 43, 539
Bst4CI ACNGT 4 cut(s) 25, 50, 269, 481
BstAPI GCANNNNNTGC 1 cut(s) 470
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 10, 125
BstKTI GATC 2 cut(s) 57, 317
BstMBI GATC 2 cut(s) 54, 314
BstMWI GCNNNNNNNGC 2 cut(s) 470, 508
BstNI CCWGG 2 cut(s) 43, 539
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 41, 537
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 183, 473, 476
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 216
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 10, 125
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 3 cut(s) 206, 207, 486
Cfr13I GGNCC 1 cut(s) 371
CsiI ACCWGGT 1 cut(s) 537
Csp6I GTAC 1 cut(s) 575
CviAII CATG 4 cut(s) 97, 101, 217, 253
CviQI GTAC 1 cut(s) 575
DpnI GATC 2 cut(s) 56, 316
DpnII GATC 2 cut(s) 54, 314
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 305, 539
EcoRII CCWGG 2 cut(s) 41, 537
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 4 cut(s) 100, 104, 220, 256
FaiI YATR 7 cut(s) 98, 102, 218, 254, 366, 390, 401
FatI CATG 4 cut(s) 96, 100, 216, 252
Fnu4HI GCNGC 3 cut(s) 197, 462, 465
FokI GGATG 2 cut(s) 17, 112
Fsp4HI GCNGC 3 cut(s) 197, 462, 465
FspBI CTAG 5 cut(s) 179, 329, 428, 549, 592
GluI GCNGC 3 cut(s) 197, 462, 465
HaeIII GGCC 1 cut(s) 372
Hin1II CATG 4 cut(s) 100, 104, 220, 256
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 212
Hpy166II GTNNAC 4 cut(s) 28, 303, 422, 484
Hpy188I TCNGA 3 cut(s) 359, 533, 558
Hpy188III TCNNGA 4 cut(s) 129, 166, 187, 262
Hpy8I GTNNAC 4 cut(s) 28, 303, 422, 484
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 127, 181, 329
HpyCH4III ACNGT 4 cut(s) 25, 50, 269, 481
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 5 cut(s) 100, 114, 199, 204, 399
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 508
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 4 cut(s) 100, 104, 220, 256
Kzo9I GATC 2 cut(s) 54, 314
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 28, 55, 124, 142, 172, 267, 524, 551
Lsp1109I GCAGC 3 cut(s) 183, 473, 476
LweI GCATC 2 cut(s) 246, 285
MabI ACCWGGT 1 cut(s) 537
MaeI CTAG 5 cut(s) 179, 329, 428, 549, 592
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 3 cut(s) 143, 377, 451
MalI GATC 2 cut(s) 56, 316
MboI GATC 2 cut(s) 54, 314
MboII GAAGA 3 cut(s) 85, 324, 422
MflI RGATCY 1 cut(s) 314
MluCI AATT 2 cut(s) 69, 341
MnlI CCTC 5 cut(s) 69, 147, 151, 278, 497
Mph1103I ATGCAT 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 43, 539
MvaI CCWGG 2 cut(s) 43, 539
MwoI GCNNNNNNNGC 2 cut(s) 470, 508
NcoI CCATGG 1 cut(s) 216
NdeII GATC 2 cut(s) 54, 314
NlaIII CATG 4 cut(s) 100, 104, 220, 256
NlaIV GGNNCC 1 cut(s) 222
NmuCI GTSAC 2 cut(s) 377, 451
NsiI ATGCAT 1 cut(s) 102
NspI RCATGY 1 cut(s) 104
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 3 cut(s) 198, 463, 466
Psp6I CCWGG 2 cut(s) 41, 537
PspGI CCWGG 2 cut(s) 41, 537
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 371
PstI CTGCAG 1 cut(s) 201
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 576
RsaNI GTAC 1 cut(s) 575
SatI GCNGC 3 cut(s) 197, 462, 465
Sau3AI GATC 2 cut(s) 54, 314
Sau96I GGNCC 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 43, 539
SexAI ACCWGGT 1 cut(s) 537
SfaNI GCATC 2 cut(s) 246, 285
SfcI CTRYAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 69, 341
SspMI CTAG 5 cut(s) 179, 329, 428, 549, 592
StyD4I CCNGG 2 cut(s) 41, 537
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 4 cut(s) 25, 50, 269, 481
TaiI ACGT 1 cut(s) 453
TaqI TCGA 3 cut(s) 53, 293, 436
TasI AATT 2 cut(s) 69, 341
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 3 cut(s) 206, 214, 486
TseFI GTSAC 2 cut(s) 377, 451
TseI GCWGC 3 cut(s) 196, 461, 464
Tsp45I GTSAC 2 cut(s) 377, 451
TspDTI ATGAA 4 cut(s) 21, 85, 405, 429
TspRI CASTG 3 cut(s) 206, 214, 486
XceI RCATGY 1 cut(s) 104
XspI CTAG 5 cut(s) 179, 329, 428, 549, 592
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.