Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Forward (+)

11611228 .. 11613318

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATGCTCAACAGTGATTCTTGTGCCAAACTCGTCTTGCGGAACAAGAATCTGGGATTGGAAGAGTTCAGGTTTCTCTGGAAAACCATTGTCAATTCAGGCTTAGGTGAAGAAACTTCTTGCCCAAGAAACATCGTCCAAGGCCGAGAAGAATGTCCTACTCGAGAAGACTCGCTCTCACAAATGGATGAAATCATCTACGCCACACTTGACAAGCTTTTTGGCAGGAACAGTTCAATCCCTCCATCACAAATTGACATTCTCGTCGTCACTGTCTTCATTGCAAGTCTAGTTGCCATTGATGTTATGCAGAATTTGTTCAAGTCATACAGGAATTCATATGCTGTTGTTGTCAGCACTGAATCCATGGCTCCTAATTGGTATTGTGGGAAAGAAAAATCCATGATGCTCACCAACTGTTTGTTTCGGGCAGGAGGAAGATCCCTTCAGCACCTAGCAATGTTGAAATTGAATTGGTTGGTCAGAACCCATATTGGCTCAAGTGACAAGGCTTATGAATGTTGCATACAACTTGAAGATGAAAGTGAACATCTAGGCTTTCGACTTACCAAACACCTCACAGAAGCAGCAGCTCTTGCTTTCACAGTGCTTCCACTAAGAGGAATAATCCGATACCTGGTGGCTTCTAGGCTTCAGAAAAACAGCAGTACCAAATGCCAAAATCTAGAAGCAGTTGGAGTTGGTTTGAATATAAAGGTTGGAATTCAACACTTTTGTCTCCACCCTGGTGGAAGAGCAATTATAAATGGGACAGCTGCAGCTTATAAATATTCAAAATTCTCCAACTTCTTAAGAAAGGTTGAAAGTTCAACAATAGGAAGCAGAAACATAAATTTGGAGTATGGGATCCAGCCAATCTGGCCCCTTCTCCAGCCATATGGGACAATCCAAACTTGGTTGCAGCATGGCCCCTCCTCCTTCATTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

317

Amino Acids

35.38

Weight (kDa)

8.91

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	3 - 92	5.4e-16	FAE1/Type III polyketide synthase-like protein
FAE1_CUT1_RppA	PF08392	95 - 202	5.9e-35	FAE1/Type III polyketide synthase-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	764, 786
AasI	GACNNNNNNGTC	1 cut(s)	263
AciI	CCGC	1 cut(s)	40
AclWI	GGATC	3 cut(s)	435, 862, 875
AcsI	RAATTY	5 cut(s)	313, 334, 723, 797, 853
AcuI	CTGAAG	2 cut(s)	431, 638
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	2 cut(s)	620, 637
AflII	CTTAAG	1 cut(s)	811
AjnI	CCWGG	2 cut(s)	636, 745
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AleI	CACNNNNGTG	1 cut(s)	747
AluBI	AGCT	4 cut(s)	217, 593, 776, 782
AluI	AGCT	4 cut(s)	217, 593, 776, 782
Alw26I	GTCTC	1 cut(s)	743
AlwI	GGATC	3 cut(s)	435, 862, 875
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	3 cut(s)	142, 881, 928
ApeKI	GCWGC	5 cut(s)	587, 590, 776, 779, 922
ApoI	RAATTY	5 cut(s)	313, 334, 723, 797, 853
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	317
AspS9I	GGNCC	2 cut(s)	882, 929
AsuHPI	GGTGA	2 cut(s)	119, 403
AvaI	CYCGRG	1 cut(s)	162
BaeI	ACNNNNGTAYC	2 cut(s)	652, 685
BamHI	GGATCC	1 cut(s)	867
BbsI	GAAGAC	2 cut(s)	174, 268
BbvI	GCAGC	5 cut(s)	599, 602, 763, 791, 934
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	638, 747
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	5 cut(s)	290, 455, 554, 648, 686
BfmI	CTRYAG	1 cut(s)	777
BfrI	CTTAAG	1 cut(s)	811
BglI	GCCNNNNNGGC	1 cut(s)	880
BisI	GCNGC	5 cut(s)	588, 591, 777, 780, 923
BlsI	GCNGC	5 cut(s)	589, 592, 778, 781, 924
Bme1390I	CCNGG	2 cut(s)	638, 747
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	882, 929
BmiI	GGNNCC	4 cut(s)	372, 869, 884, 931
BmrFI	CCNGG	2 cut(s)	638, 747
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	2 cut(s)	174, 268
BpmI	CTGGAG	1 cut(s)	875
Bpu10I	CCTNAGC	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	484
BsaJI	CCNNGG	3 cut(s)	139, 366, 745
Bsc4I	CCNNNNNNNGG	2 cut(s)	620, 637
Bse3DI	GCAATG	2 cut(s)	279, 465
BseBI	CCWGG	2 cut(s)	638, 747
BseDI	CCNNGG	3 cut(s)	139, 366, 745
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	620, 637
BseMI	GCAATG	2 cut(s)	279, 465
BseRI	GAGGAG	1 cut(s)	925
BseXI	GCAGC	5 cut(s)	599, 602, 763, 791, 934
BshFI	GGCC	3 cut(s)	144, 883, 930
BsiHKCI	CYCGRG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	784, 916
BslI	CCNNNNNNNGG	2 cut(s)	620, 637
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	2 cut(s)	784, 916
BsnI	GGCC	3 cut(s)	144, 883, 930
BsoBI	CYCGRG	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	440, 867
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	3 cut(s)	144, 883, 930
BspLI	GGNNCC	4 cut(s)	372, 869, 884, 931
BspMAI	CTGCAG	1 cut(s)	781
BspPI	GGATC	3 cut(s)	435, 862, 875
BspQI	GCTCTTC	1 cut(s)	748
BspTI	CTTAAG	1 cut(s)	811
BsrDI	GCAATG	2 cut(s)	279, 465
BssECI	CCNNGG	3 cut(s)	139, 366, 745
BssMI	GATC	2 cut(s)	440, 867
BssT1I	CCWWGG	2 cut(s)	139, 366
Bst2UI	CCWGG	2 cut(s)	638, 747
Bst4CI	ACNGT	5 cut(s)	14, 233, 274, 419, 607
Bst6I	CTCTTC	2 cut(s)	57, 748
BstAFI	CTTAAG	1 cut(s)	811
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstDEI	CTNAG	2 cut(s)	103, 617
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	2 cut(s)	443, 870
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	2 cut(s)	440, 867
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 880
BstNI	CCWGG	2 cut(s)	638, 747
BstSCI	CCNGG	2 cut(s)	636, 745
BstSFI	CTRYAG	1 cut(s)	777
BstV1I	GCAGC	5 cut(s)	599, 602, 763, 791, 934
BstV2I	GAAGAC	2 cut(s)	174, 268
BstX2I	RGATCY	2 cut(s)	440, 867
BstXI	CCANNNNNNTGG	2 cut(s)	749, 899
BstYI	RGATCY	2 cut(s)	440, 867
BsuRI	GGCC	3 cut(s)	144, 883, 930
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	4 cut(s)	19, 270, 357, 612
Cfr13I	GGNCC	2 cut(s)	882, 929
CsiI	ACCWGGT	1 cut(s)	636
Csp6I	GTAC	1 cut(s)	669
CviAII	CATG	3 cut(s)	367, 403, 926
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	2 cut(s)	103, 617
DpnI	GATC	2 cut(s)	442, 869
DpnII	GATC	2 cut(s)	440, 867
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	2 cut(s)	57, 748
EarI	CTCTTC	2 cut(s)	57, 748
Eco130I	CCWWGG	2 cut(s)	139, 366
Eco57I	CTGAAG	2 cut(s)	431, 638
Eco88I	CYCGRG	1 cut(s)	162
EcoRI	GAATTC	2 cut(s)	334, 723
EcoRII	CCWGG	2 cut(s)	636, 745
EcoT14I	CCWWGG	2 cut(s)	139, 366
ErhI	CCWWGG	2 cut(s)	139, 366
FaeI	CATG	3 cut(s)	370, 406, 929
FaqI	GGGAC	2 cut(s)	784, 916
FatI	CATG	3 cut(s)	366, 402, 925
FauNDI	CATATG	2 cut(s)	340, 898
Fnu4HI	GCNGC	5 cut(s)	588, 591, 777, 780, 923
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	5 cut(s)	588, 591, 777, 780, 923
FspBI	CTAG	5 cut(s)	290, 455, 554, 648, 686
GluI	GCNGC	5 cut(s)	588, 591, 777, 780, 923
GsuI	CTGGAG	1 cut(s)	875
HaeIII	GGCC	3 cut(s)	144, 883, 930
Hin1II	CATG	3 cut(s)	370, 406, 929
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	4 cut(s)	17, 49, 170, 362
HphI	GGTGA	2 cut(s)	119, 403
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	3 cut(s)	485, 632, 657
Hpy188III	TCNNGA	4 cut(s)	79, 164, 686, 948
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	3 cut(s)	455, 896, 949
HpyCH4III	ACNGT	5 cut(s)	14, 233, 274, 419, 607
HpyCH4V	TGCA	5 cut(s)	284, 310, 525, 779, 922
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 880
HpyF3I	CTNAG	2 cut(s)	103, 617
Hsp92II	CATG	3 cut(s)	370, 406, 929
Kzo9I	GATC	2 cut(s)	440, 867
LguI	GCTCTTC	1 cut(s)	748
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	5 cut(s)	599, 602, 763, 791, 934
LweI	GCATC	1 cut(s)	396
MabI	ACCWGGT	1 cut(s)	636
MaeI	CTAG	5 cut(s)	290, 455, 554, 648, 686
MaeIII	GTNAC	2 cut(s)	268, 503
MalI	GATC	2 cut(s)	442, 869
MboI	GATC	2 cut(s)	440, 867
MboII	GAAGA	8 cut(s)	74, 122, 161, 179, 268, 450, 548, 765
MflI	RGATCY	2 cut(s)	440, 867
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	3 cut(s)	676, 700, 828
MnlI	CCTC	6 cut(s)	252, 428, 587, 614, 943, 946
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	812
MslI	CAYNNNNRTG	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	776
MspCI	CTTAAG	1 cut(s)	811
MspR9I	CCNGG	2 cut(s)	638, 747
MvaI	CCWGG	2 cut(s)	638, 747
MwoI	GCNNNNNNNGC	2 cut(s)	596, 880
NcoI	CCATGG	1 cut(s)	366
NdeI	CATATG	2 cut(s)	340, 898
NdeII	GATC	2 cut(s)	440, 867
NlaIII	CATG	3 cut(s)	370, 406, 929
NlaIV	GGNNCC	4 cut(s)	372, 869, 884, 931
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	268, 503
OliI	CACNNNNGTG	1 cut(s)	747
PaeR7I	CTCGAG	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	748
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	17, 49, 362
PkrI	GCNGC	5 cut(s)	589, 592, 778, 781, 924
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PsiI	TTATAA	2 cut(s)	764, 786
Psp6I	CCWGG	2 cut(s)	636, 745
PspGI	CCWGG	2 cut(s)	636, 745
PspN4I	GGNNCC	4 cut(s)	372, 869, 884, 931
PspPI	GGNCC	2 cut(s)	882, 929
PstI	CTGCAG	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	440, 867
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
RseI	CAYNNNNRTG	1 cut(s)	747
SapI	GCTCTTC	1 cut(s)	748
SaqAI	TTAA	1 cut(s)	812
SatI	GCNGC	5 cut(s)	588, 591, 777, 780, 923
Sau3AI	GATC	2 cut(s)	440, 867
Sau96I	GGNCC	2 cut(s)	882, 929
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	638, 747
SexAI	ACCWGGT	1 cut(s)	636
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	1 cut(s)	777
Sfr274I	CTCGAG	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	3 cut(s)	162, 499, 811
SmoI	CTYRAG	3 cut(s)	162, 499, 811
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	1 cut(s)	791
SspMI	CTAG	5 cut(s)	290, 455, 554, 648, 686
StyD4I	CCNGG	2 cut(s)	636, 745
StyI	CCWWGG	2 cut(s)	139, 366
TaaI	ACNGT	5 cut(s)	14, 233, 274, 419, 607
TaqI	TCGA	2 cut(s)	163, 562
TfiI	GAWTC	3 cut(s)	17, 49, 362
Tru1I	TTAA	1 cut(s)	812
Tru9I	TTAA	1 cut(s)	812
TscAI	CASTG	4 cut(s)	19, 277, 364, 612
TseFI	GTSAC	2 cut(s)	268, 503
TseI	GCWGC	5 cut(s)	587, 590, 776, 779, 922
Tsp45I	GTSAC	2 cut(s)	268, 503
TspDTI	ATGAA	6 cut(s)	204, 268, 327, 531, 555, 931
TspRI	CASTG	4 cut(s)	19, 277, 364, 612
Vha464I	CTTAAG	1 cut(s)	811
XapI	RAATTY	5 cut(s)	313, 334, 723, 797, 853
XbaI	TCTAGA	1 cut(s)	685
XhoI	CTCGAG	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	5 cut(s)	290, 455, 554, 648, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.