Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003355

Physical Location & Seq

Genomic Coordinates Reverse (-)

25261231 .. 25262613

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G225900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGACAATGTGTCTTCTCACCCTTTACTATGGTTTCTTTTGCCTCTGCAAGTTAGTTCTCCAAAAAAGAGACCAGAGCTGCTATATGCTGGCTTATGAGTGTTACAAGGCCAAAGAGGACATGAAGGTCAACAGTGATTCCTGCGCAAAAATCGTCATGCAGAACAAGAATCTGGGATTGGAAGAACTCAGGTTTCTCTTGAAAACTATTGTCAATTCTGGCATTGGTGAAGAAACTTCTTGCCCAAGAAACATCATTGAATGCCGAAGTTCAACCATAGAAGATGAGCTTCATGAGATGGATGGTATAATATTTGACACACTTGACAAGCTTTTTGCTAGGTCTACTTCAATTTCTCCTTCACAAATCGACATTCTGGTTGTCAATGTGTCAATGTTCTCCCCTGCACCCTCTCTAACATCTCGTATAATAAATCGTTACAAGATGAGGGAGGACATCAAGAACTTCAACCTCTCAGGAATGGGATGCAGTGCAAGTCTCATTGCTATTGATGTTGTACAAAACTTGTTCAAGTCATACAAAAACGCAAATGCAATTGTTGTAAGCACAGAATCCCTGGCTCCTAACTGGTACTGCGGCAAAGAAAAGTCCATGATGCTCACCAACTGTCTGTTCCGCTCGGGAGGGTGTTCGATGCTGTTCACAAACAACAGAGACCTAAAGCACCAAGCCATGTTGAAGTTAAAGCATCTGGTACGAACCCACATTGGCTCAAGTAATGAAGCGTATGATTGCTGCATACAGGCAGAAGATGAGAGTGGATATCAAGGTTTTCGCCTTACCAAATACCTCACAAAAGCAGCTGCTCTGGCTTTTACAATGAACCTCCAAATTCTAGTCCCTAAAATGCTTCCACTAAGAGAAATTCTCAGGTATCTGTTGGCATCTCTGCTTCATAAATTAAGTAATAAGAGCCAAAACCTAGAAGCAGATGGTGTGAAACTGAATCTTAAGACTGGGATCGAGCACTTTTGCATTCACCCTGGTGGAAGAGCAATCATAGATGGGATTGGTAAGAGCTTGGGTCTAAGTGATTATGATGTAGAGCCATCTAGAATGGCACTTTACAGGTTTGGTAACACATCAGCAGCTGGCTTTTGGTATGCTTTGGGATACATGGAGGCCAAGCAGAGGCTTAAGAAGGGCAACAGAATTCTGATGAGTGGATTTGGAGCAGGTTTTAAGTGCAACAATATTGTGTGGGAAGTACTCAAGGACTTGGAGGATGCTAATGTTTGGAAAGATTGCATAGACAGTTACCCTCCTGAAACCCTAGTCAATCCATTCATGGAGAAGTATGGTTGGCTCAATGATGAATATCTAAGCTTTCTTAGGCTTGATTTTTCCCAAATATTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

461

Amino Acids

52.05

Weight (kDa)

8.2

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04530
fragaria_vesca	FvH4_7g20910 FvH4_7g20910 FvH4_7g20910
malus_domestica	MD01G1118800.v1.1 MD01G1119200.v1.1 MD07G1187000.v1.1 MD07G1187300.v1.1 MD07G1187400.v1.1 MD07G1187800.v1.1
prunus_persica	Prupe.2G103600_v2.0.a1 Prupe.2G103700_v2.0.a1 Prupe.2G225800_v2.0.a1 Prupe.2G225900_v2.0.a1
pyrus_communis	pycom01g14580
rosa_chinensis	RchiOBHm_Chr1g0364911 RchiOBHm_Chr1g0365221 RchiOBHm_Chr1g0365281
rosa_laevigata	RLG00000027434 RLG00000027437 RLG00000027460
rosa_multiflora	Rmu_sc0004695.1_g000003 Rmu_sc0004695.1_g000005 Rmu_sc0008035.1_g000016
rosa_roxburghii	Rroxscaffold_4G00291360 Rroxscaffold_4G00291900
rosa_rugosa	Rorug01G0111400 Rorug01G0320400
rosa_samantha	Rh1AG329400 Rh1AG329600 Rh1BG102500 Rh1BG290800 Rh1BG291000 Rh1CG307700 Rh1DG322500
rosa_wichuraiana	Rw1G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc16I	TGCGCA	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	1187
AccBSI	CCGCTC	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	344
AciI	CCGC	2 cut(s)	597, 637
AclWI	GGATC	1 cut(s)	989
AcsI	RAATTY	3 cut(s)	852, 885, 1173
AfaI	GTAC	4 cut(s)	519, 593, 717, 1230
AfiI	CCNNNNNNNGG	1 cut(s)	1152
AflII	CTTAAG	2 cut(s)	971, 1157
AgsI	TTSAA	7 cut(s)	202, 260, 273, 351, 469, 532, 700
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	576, 1003
AjuI	GAANNNNNNNTTGG	4 cut(s)	161, 193, 617, 649
AleI	CACNNNNGTG	1 cut(s)	1005
AluBI	AGCT	7 cut(s)	78, 289, 331, 824, 1041, 1112, 1347
AluI	AGCT	7 cut(s)	78, 289, 331, 824, 1041, 1112, 1347
Alw21I	GWGCWC	1 cut(s)	990
Alw26I	GTCTC	3 cut(s)	63, 503, 669
AlwI	GGATC	1 cut(s)	989
AlwNI	CAGNNNCTG	1 cut(s)	1112
Ama87I	CYCGRG	1 cut(s)	640
AoxI	GGCC	2 cut(s)	108, 1143
ApeKI	GCWGC	5 cut(s)	78, 756, 821, 824, 1109
ApoI	RAATTY	3 cut(s)	852, 885, 1173
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspLEI	GCGC	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	10, 239, 613, 992
AvaI	CYCGRG	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	990
BbvI	GCAGC	5 cut(s)	65, 743, 811, 833, 1121
BccI	CCATC	5 cut(s)	292, 296, 947, 1019, 1078
BciT130I	CCWGG	2 cut(s)	578, 1005
BciVI	GTATCC	1 cut(s)	1127
BcoDI	GTCTC	3 cut(s)	63, 503, 669
BfaI	CTAG	5 cut(s)	339, 857, 944, 1074, 1295
BfrI	CTTAAG	2 cut(s)	971, 1157
BfuAI	ACCTGC	1 cut(s)	1187
BfuI	GTATCC	1 cut(s)	1127
BisI	GCNGC	6 cut(s)	79, 598, 757, 822, 825, 1110
BlsI	GCNGC	6 cut(s)	80, 599, 758, 823, 826, 1111
BmcAI	AGTACT	1 cut(s)	1230
Bme1390I	CCNGG	2 cut(s)	578, 1005
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	640
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	578, 1005
BmrI	ACTGGG	1 cut(s)	987
BmsI	GCATC	6 cut(s)	476, 606, 645, 718, 914, 1237
BmuI	ACTGGG	1 cut(s)	987
BpiI	GAAGAC	1 cut(s)	5
BplI	GAGNNNNNCTC	2 cut(s)	873, 905
BpuEI	CTTGAG	2 cut(s)	718, 1217
BsaBI	GATNNNNATC	1 cut(s)	1338
BsaI	GGTCTC	2 cut(s)	63, 669
BsaJI	CCNNGG	2 cut(s)	576, 1003
Bsc4I	CCNNNNNNNGG	1 cut(s)	1152
Bse1I	ACTGG	2 cut(s)	593, 982
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	1338
BseBI	CCWGG	2 cut(s)	578, 1005
BseDI	CCNNGG	2 cut(s)	576, 1003
BseGI	GGATG	3 cut(s)	307, 491, 1252
BseJI	GATNNNNATC	1 cut(s)	1338
BseLI	CCNNNNNNNGG	1 cut(s)	1152
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	3 cut(s)	202, 489, 904
BseNI	ACTGG	2 cut(s)	593, 982
BseXI	GCAGC	5 cut(s)	65, 743, 811, 833, 1121
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	110, 1145
BsiHKAI	GWGCWC	1 cut(s)	990
BsiHKCI	CYCGRG	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	1 cut(s)	1152
BsmAI	GTCTC	3 cut(s)	63, 503, 669
BsmFI	GGGAC	1 cut(s)	845
BsmI	GAATGC	2 cut(s)	266, 996
BsnI	GGCC	2 cut(s)	110, 1145
Bso31I	GGTCTC	2 cut(s)	63, 669
BsoBI	CYCGRG	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	990
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	1 cut(s)	981
BspACI	CCGC	2 cut(s)	597, 637
BspANI	GGCC	2 cut(s)	110, 1145
BspCNI	CTCAG	3 cut(s)	201, 488, 903
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	1187
BspPI	GGATC	1 cut(s)	989
BspQI	GCTCTTC	1 cut(s)	1006
BspTI	CTTAAG	2 cut(s)	971, 1157
BspTNI	GGTCTC	2 cut(s)	63, 669
BsrBI	CCGCTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	501
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	593, 982
BssECI	CCNNGG	2 cut(s)	576, 1003
BssMI	GATC	1 cut(s)	981
Bst2UI	CCWGG	2 cut(s)	578, 1005
Bst4CI	ACNGT	3 cut(s)	134, 629, 1277
Bst6I	CTCTTC	1 cut(s)	1006
BstAFI	CTTAAG	2 cut(s)	971, 1157
BstAUI	TGTACA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	90, 1114
BstDEI	CTNAG	8 cut(s)	188, 475, 878, 890, 1049, 1343, 1352, 1380
BstF5I	GGATG	3 cut(s)	307, 491, 1252
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	984
BstMAI	GTCTC	3 cut(s)	63, 503, 669
BstMBI	GATC	1 cut(s)	981
BstMWI	GCNNNNNNNGC	1 cut(s)	830
BstNI	CCWGG	2 cut(s)	578, 1005
BstSCI	CCNGG	2 cut(s)	576, 1003
BstV1I	GCAGC	5 cut(s)	65, 743, 811, 833, 1121
BstV2I	GAAGAC	1 cut(s)	5
BsuI	GTATCC	1 cut(s)	1127
BsuRI	GGCC	2 cut(s)	110, 1145
BtsCI	GGATG	3 cut(s)	307, 491, 1252
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	2 cut(s)	139, 496
BveI	ACCTGC	1 cut(s)	1187
Cac8I	GCNNGC	2 cut(s)	90, 1114
CaiI	CAGNNNCTG	1 cut(s)	1112
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	146
Csp6I	GTAC	4 cut(s)	518, 592, 716, 1229
CviAII	CATG	7 cut(s)	121, 157, 293, 613, 694, 1138, 1309
CviQI	GTAC	4 cut(s)	518, 592, 716, 1229
DdeI	CTNAG	8 cut(s)	188, 475, 878, 890, 1049, 1343, 1352, 1380
DpnI	GATC	1 cut(s)	983
DpnII	GATC	1 cut(s)	981
DrdI	GACNNNNNNGTC	1 cut(s)	125
DriI	GACNNNNNGTC	1 cut(s)	9
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	1006
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	1006
Eco31I	GGTCTC	2 cut(s)	63, 669
Eco32I	GATATC	1 cut(s)	785
Eco88I	CYCGRG	1 cut(s)	640
EcoRI	GAATTC	1 cut(s)	1173
EcoRII	CCWGG	2 cut(s)	576, 1003
EcoRV	GATATC	1 cut(s)	785
FaeI	CATG	7 cut(s)	124, 160, 296, 616, 697, 1141, 1312
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	7 cut(s)	120, 156, 292, 612, 693, 1137, 1308
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	6 cut(s)	79, 598, 757, 822, 825, 1110
FokI	GGATG	3 cut(s)	314, 498, 1259
Fsp4HI	GCNGC	6 cut(s)	79, 598, 757, 822, 825, 1110
FspBI	CTAG	5 cut(s)	339, 857, 944, 1074, 1295
FspI	TGCGCA	1 cut(s)	145
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	6 cut(s)	79, 598, 757, 822, 825, 1110
HaeIII	GGCC	2 cut(s)	110, 1145
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	7 cut(s)	124, 160, 296, 616, 697, 1141, 1312
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	329, 1345
HinfI	GANTC	4 cut(s)	137, 169, 572, 967
HphI	GGTGA	4 cut(s)	10, 239, 613, 992
Hpy166II	GTNNAC	3 cut(s)	130, 345, 663
Hpy188I	TCNGA	1 cut(s)	1179
Hpy188III	TCNNGA	7 cut(s)	199, 293, 460, 477, 642, 1074, 1286
Hpy8I	GTNNAC	3 cut(s)	130, 345, 663
HpyAV	CCTTC	3 cut(s)	118, 369, 1156
HpyCH4III	ACNGT	3 cut(s)	134, 629, 1277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	830
HpyF3I	CTNAG	8 cut(s)	188, 475, 878, 890, 1049, 1343, 1352, 1380
Hsp92II	CATG	7 cut(s)	124, 160, 296, 616, 697, 1141, 1312
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	981
LguI	GCTCTTC	1 cut(s)	1006
LmnI	GCTCC	2 cut(s)	586, 1193
Lsp1109I	GCAGC	5 cut(s)	65, 743, 811, 833, 1121
LweI	GCATC	6 cut(s)	476, 606, 645, 718, 914, 1237
MaeI	CTAG	5 cut(s)	339, 857, 944, 1074, 1295
MaeIII	GTNAC	4 cut(s)	101, 437, 1097, 1277
MalI	GATC	1 cut(s)	983
MbiI	CCGCTC	1 cut(s)	639
MboI	GATC	1 cut(s)	981
MboII	GAAGA	6 cut(s)	5, 194, 242, 293, 782, 1023
MfeI	CAATTG	1 cut(s)	555
MhlI	GDGCHC	1 cut(s)	990
MluCI	AATT	7 cut(s)	214, 351, 555, 852, 885, 920, 1173
MseI	TTAA	5 cut(s)	704, 923, 972, 1158, 1203
MslI	CAYNNNNRTG	1 cut(s)	1005
MspA1I	CMGCKG	2 cut(s)	824, 1112
MspCI	CTTAAG	2 cut(s)	971, 1157
MspR9I	CCNGG	2 cut(s)	578, 1005
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	266, 996
MvaI	CCWGG	2 cut(s)	578, 1005
MwoI	GCNNNNNNNGC	1 cut(s)	830
NdeII	GATC	1 cut(s)	981
NlaIII	CATG	7 cut(s)	124, 160, 296, 616, 697, 1141, 1312
NlaIV	GGNNCC	1 cut(s)	582
NsbI	TGCGCA	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	1005
PagI	TCATGA	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	1006
PctI	GAATGC	2 cut(s)	266, 996
PfeI	GAWTC	4 cut(s)	137, 169, 572, 967
PkrI	GCNGC	6 cut(s)	80, 599, 758, 823, 826, 1111
Psp6I	CCWGG	2 cut(s)	576, 1003
PspGI	CCWGG	2 cut(s)	576, 1003
PspN4I	GGNNCC	1 cut(s)	582
PstNI	CAGNNNCTG	1 cut(s)	1112
PvuII	CAGCTG	2 cut(s)	824, 1112
RsaI	GTAC	4 cut(s)	519, 593, 717, 1230
RsaNI	GTAC	4 cut(s)	518, 592, 716, 1229
RseI	CAYNNNNRTG	1 cut(s)	1005
SapI	GCTCTTC	1 cut(s)	1006
SaqAI	TTAA	5 cut(s)	704, 923, 972, 1158, 1203
SatI	GCNGC	6 cut(s)	79, 598, 757, 822, 825, 1110
Sau3AI	GATC	1 cut(s)	981
ScaI	AGTACT	1 cut(s)	1230
ScrFI	CCNGG	2 cut(s)	578, 1005
SduI	GDGCHC	1 cut(s)	990
SfaNI	GCATC	6 cut(s)	476, 606, 645, 718, 914, 1237
SmiMI	CAYNNNNRTG	1 cut(s)	1005
SmlI	CTYRAG	4 cut(s)	733, 971, 1157, 1232
SmoI	CTYRAG	4 cut(s)	733, 971, 1157, 1232
Sse9I	AATT	7 cut(s)	214, 351, 555, 852, 885, 920, 1173
SsiI	CCGC	2 cut(s)	597, 637
SspI	AATATT	3 cut(s)	312, 1216, 1374
SspMI	CTAG	5 cut(s)	339, 857, 944, 1074, 1295
StyD4I	CCNGG	2 cut(s)	576, 1003
TaaI	ACNGT	3 cut(s)	134, 629, 1277
TaqI	TCGA	3 cut(s)	369, 653, 984
TasI	AATT	7 cut(s)	214, 351, 555, 852, 885, 920, 1173
TatI	WGTACW	2 cut(s)	517, 1228
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	4 cut(s)	137, 169, 572, 967
Tru1I	TTAA	5 cut(s)	704, 923, 972, 1158, 1203
Tru9I	TTAA	5 cut(s)	704, 923, 972, 1158, 1203
TscAI	CASTG	2 cut(s)	139, 496
TseI	GCWGC	5 cut(s)	78, 756, 821, 824, 1109
TspDTI	ATGAA	7 cut(s)	137, 281, 756, 857, 905, 1297, 1350
TspRI	CASTG	2 cut(s)	139, 496
Vha464I	CTTAAG	2 cut(s)	971, 1157
XapI	RAATTY	3 cut(s)	852, 885, 1173
XbaI	TCTAGA	1 cut(s)	1073
XmiI	GTMKAC	1 cut(s)	344
XspI	CTAG	5 cut(s)	339, 857, 944, 1074, 1295
ZrmI	AGTACT	1 cut(s)	1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.